Array 1 816914-818163 **** Predicted by CRISPRDetect 2.4 *** >NC_010610.1 Limosilactobacillus fermentum IFO 3956, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 816914 29 100.0 32 ............................. TAAAGGAGAATACTATGATCAACAAAAAAATT 816975 29 100.0 32 ............................. TTTTGCAGGGTTCGCTAGTGATGGCAAAGGTG 817036 29 100.0 32 ............................. ATCAGCTTGTGCTGCACTTGCCGATGATTTAG 817097 29 100.0 32 ............................. GATATGATCTACGATCAGGGAACCTATGCTTC 817158 29 96.6 32 ............................C ATCTTGCCTACGATTGACACCTCAACCGGTGA 817219 29 100.0 32 ............................. AGGGACACAAGATAACCTTGCCGAGATAATGA 817280 29 100.0 32 ............................. CGTGTTTCAAGATCCGTCCCGAGCTTGTTTTG 817341 29 100.0 32 ............................. TTAATAGCAATAGTCTACCGTATTAGGAGAAG 817402 29 100.0 32 ............................. ACACAATAAGCGTTAATACTAAAAATAACGGT 817463 29 100.0 32 ............................. CCCGGTTTCTGTATCTACTCCAACTTCATCGA 817524 29 100.0 32 ............................. TTGTTATATGAGTAACCGCACTTAGCATTAGC 817585 29 100.0 32 ............................. TAAATACTTAAACTACAAGGTCGATGAAAAAG 817646 29 96.6 32 ............................C CAGATAAGATGACGATCATCACGACCAACAAC 817707 29 100.0 32 ............................. AGGTGGCAATAGGCCATCCCCAGGGGTCTCCC 817768 29 100.0 32 ............................. TATAGTCGGCCACTGAATGGACTTCCGCATCA 817829 29 100.0 33 ............................. ATTGGGAGAAGCTGTTTGGCCCACTTGATCCAA 817891 29 100.0 32 ............................. TTCCAGTCGTGGAATCGATGCTGACCGTCGGT 817952 29 96.6 32 ............................C CAACAAAGCGGCAATCAACAGCAAGGACCAGC 818013 29 100.0 32 ............................. ATGCAAGAGTGGCTTTATCAAGTCGCCAATGC 818074 29 100.0 32 ............................. TATTTGTAAACCATCACTGCGTTTACCGCTGT 818135 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.4 32 GTATTCCCCATGTATGTGGGGGTGATCCT # Left flank : GAAGGAACTGATGTCTACTTTGCTCATCCGTACTCACCATGGGAGCGCGGAACAAATGAGAACCAGAACGGCCTTCTACGAGAGTTTATTCCGAAAGGTCGCTCACTCCACCATTACGACATCATTGATATTCAGAGCTTCCAGGACGCACTCAACAGCCGGCCTCGTCGTATCTTGGGCTACCGGAGTGCGGCGGAACTGATGCCGGAACTCTAAGCTGTGTACCACTTATAGGATTGGACTAGAAACTGTTGCACTTAGATTGACAATACGGGAATTATTTCAAATCGTATGATTGATTTAATGCCAATTATAAAGAAGGATCAAAAGTTTTTAGATAATTATCGGTTAGCAACAGTTCTTAAGAATTATGGAATTGAGAATGACTATCCGCATAAATCTATATCTGATGCAATGGCTACTTTGGACCTAGCGCTTAAACTAATCAAAAATGACAAACTAAGGATCTAAAAAAGGCGTCATATAGGGATCTGTTTACG # Right flank : CCAGATTCCGGTCAAGTCCAAAATGTTGGTGTAAATTAAATTCCGCGAATTTATCATTTCACAAGCTTAAGCATACCGGCTTCTTCTGAATTGTCATCTTTTTCAATCCCGTGGTAAACGGTCATGTTTAAGTACCGTGGACCAGCAGCCCATTTTTCATTCTGTTCAATCAGTAGTGCTCCCATTAGTCGCAAGACGCTTAGATCATTCGGGAATATCCGGATTACACGGTCACGACGACGGATTTCTTGATTAACCCGCTCAATTGTATTATTCGTCCGGAGACGCTTCCTTAGCTCCTCTGGGAGCTGGTAGATCACCATTAATTCGTCAAAACTATTTTCTAATTTCTTCACCACCTTAGGGAACTCGGTCTGCCAATCTTTAACCAATTGGTCACGCCGTTCAACCGCTTGGTCGTACGTTGGAGCATTAAATAAATCTTTGAGTCGGTTAGCAACTTCTTTACGATCCTTGAGTGCCAGAATACTTGTACAGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 819535-820967 **** Predicted by CRISPRDetect 2.4 *** >NC_010610.1 Limosilactobacillus fermentum IFO 3956, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 819535 29 100.0 32 ............................. ACAACCAACTGCAAACGGCAACCCAACAGATC 819596 29 100.0 32 ............................. ACAAAGATGAACTTGTGAAAATGTCTTTCTTG 819657 29 100.0 32 ............................. CAAGGAAATACATCCCAAGTTTATCTAACTGG 819718 29 96.6 32 ............................C CCGGTGAAAAGCAAGGCGAACGCTTCTTCCTC 819779 29 100.0 32 ............................. ACTGGTGATAACTCTGGTCGCCTGATGGTTTT 819840 29 100.0 32 ............................. AGCTAATGATTTCTTTGGTAGCGTCAGCCAGG 819901 29 96.6 33 ............................C GGATGTGCATCACGATCATGAAAAACGACCACA 819963 29 100.0 32 ............................. AGTAAATGGTATCAGGGGGCCGGCGAGTTACA 820024 29 100.0 32 ............................. TGCTGACAAGGTATTTAAGGACGCCGAGAAAC 820085 29 100.0 32 ............................. TGTCGGTTGTTCTGCTGATTGCGTTGCTGTGG 820146 29 100.0 32 ............................. TAAGCCGTTTAGCCATTGCAGCGTTGCTCATA 820207 29 100.0 32 ............................. CAGTGCCCACCCGGTGGACGTTAGCTCTATCC 820268 29 100.0 32 ............................. ACCGGCGGGCGAAGTTGGTCAACCTCGTCATT 820329 29 100.0 32 ............................. GGTATCACCTGAATATGGCGCATCCCATCGTT 820390 29 100.0 32 ............................. ATGATCCAGGCGAGGCGATTGCTAACGGTAAG 820451 29 89.7 32 ..........................GTC GACGTTCATACCGAGGCCATTGTCAGTCCAAG 820512 29 100.0 32 ............................. ACATGGCATACGCTTGAAATTGACTACGATAA 820573 29 96.6 32 ............................C ATGATATCCATGGTTAGCAGTAGTAATTATGA 820634 29 100.0 32 ............................. CTTGCTAGACGCTTTCTTCCACTTTGAAAGGG 820695 29 100.0 32 ............................. ATATCAACGTTTTAAGTTGGTTAGTGTCCCAA 820756 29 100.0 32 ............................. TGGAAGAGCTGGACGTTGTCAAATGACGGGAA 820817 29 100.0 32 ............................. TAAGTATTCTTAAAGGAGGTCACACATTACTG 820878 29 100.0 32 ............................. ACTTATCCATACCAACTTGACTAATTAAATCA 820939 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.1 32 GTATTCCCCATGTATGTGGGGGTGATCCT # Left flank : ACTTTTAGAAAAGGTTGTCCCACATAACTTCTTAGTAATCTCAGCTACTTTACGTGTTGAAACACCTTGGATTACCATTTCCATTAATGCCAAATCAAAGGCCTGCTCACTACGCTGGTAGCGTTTGAACAGCTGTGTTGAAAAATTGCCATGACGGAGTTTAGGAACGTGTAGTTCTAGAGACCCTACGCGGGTGGTAAGCTGACGAACCCGATAACCATTCCGTGAATTGGTTCGTTCATCCGAACGTTCATAAGCCTTAGCTTTAATCTGCTCAGTCGCTTCGGACTTAAGAATTTCATCAAGGATCTTGGCCATAATTGATTGCATGACCTTATCCCGATCACCTAGTAATAGTTCCTTTAATTCGTCATCTTCTAAATTTAATTCAACCTTTGGCATAATGAAGTTCCTTTCAGATTTCACAAAGTCCTATTTAGAATTTACACCAATTATACGGACATAACCCAGATTCCTGCATTTCGTCGGTAAACTTGAAA # Right flank : TTGGTTATGTCCGTATAATTGGTGTAAATTCTAAATAGGACCTTGTGAAATCTGAAAGGAACTTCATTATGCCAAAGGTTGAATTAAATTTAGAAGATGACGAATTAAAGGAACTATTACTAGGTGATCGGGATAAGGCCATGCAATCAATTATGGCCAAGATCCTTGATGAAATTCTTAAGTCCGAAGCGACTGAGCAGATTAAAGCTAAGGCTTATGAACGTTCGGATGAGCGAACCAATTCACGGAATGGTTATCGGGTTCGTCAGCTTACCACACGAGTAGGAACACTTGAACTACACGTTCCTAAACTCCGTCATGGTAATTTTTCAACACAGCTGTTCAAACGCTACCAGCGTAGTGAGCAGGCCTTTGATTTGGCATTAATGGAAATGGTAATCCAAGGTGTTTCAACACGTAAAGTAGCTGAGATTACTAAGAAGTTATGTGGGACAACCTTTTCTAAAAGTACGGTCTCGGCTTTATGCAATAATTTGGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1393734-1393562 **** Predicted by CRISPRDetect 2.4 *** >NC_010610.1 Limosilactobacillus fermentum IFO 3956, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 1393733 35 100.0 33 ................................... TATTTGCTTGGAAGTTCGTCAAGCCTTGGCTTG 1393665 35 100.0 34 ................................... GATGCGACAGGTCAAAACGCCCAAATTGAGGGTA 1393596 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ================================== ================== 3 35 100.0 34 GTCGCACTCCTTCGCGGGGGTGCGTGGATTGAAAT # Left flank : CGAGGCGATTTGGATGAATATCCACCTTTTCTCTGGAAGTAGGTGCTTTAAATGTTGGTAATTGTTAGTTATGATGTAAATACAGAAGACCCAACTGGGAGAAGACGATTACGTCACGTGGCAAAGATTTGTAAGGATTACGGTCAACGGATTCAAAAGTCAGTATTTGAATGTAATGTTGATTCCACTAAGCTTACTGTCTTAAAGCAACGTCTTCTAGCGGAATATGATGAAGATACAGATAGCCTATGTTTCTTTAATCTAGGTAACAAATATCAGAATAAGGTAAGCCACTATGGTTCTAATTCGGTGGTAAACTTAGATGAACCGGTAATATTCTAGTATTATCAGTAGTGCGAACCTAAAGTGAACATAAATTCTTTAAGGATTCGCACCAGAATTTTGGTGATTTTATTCAAAAATCACACTAACAGTTGCTTTTTCAGCTGTTTGACACCCAATATGTAGAAGATGGAGTTCTCTATTTGCTATATGTTGCG # Right flank : GCTTCAGTCGTATATCGACGCCGCCGACCAGTTTGTCGCACTCCTTCGCGGGGGTGTGGTCCCCTGTCAATAAAATAGACAATTTAAATAGAGACTTTTTTGTCCTATGCCACGACTAAATTTTGAATTTGAGTTTGATACTCATCTTCAAGTTGCTTTGGTGATTTGAATCCACAGTGACTGTGAATTCTAACTGTGTTGTAAAACGTTTCAATGTACTGAAAAACTAGTCGTTTAGCTTCGGAGTATGAATGGATTTTAAACCGATTTATCCATTCACGCTTAATCAAGGCATGAAACGACTCAATGCAGGCATTATCCCAAGGATAAGCTTTCTTTGAACAGCTTAATGTCATGTTAGCTGTAACTTGATTGTAAGCTTCAGACGTAAACTGACTACCACGATCACTGTGCATGATTAATGGCTTGCTAATATGGCGACTGTGCTTAGTCTTTTCAATAAGTGGGATGACATTCGATACCTCCAAGGTTTCAGATAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTCGCGGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA //