Array 1 15196-16501 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZK01000103.1 Helicobacter cinaedi strain P19D1315 entry103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 15196 36 100.0 33 .................................... ACTTACAAAACTATGGGTATGAGAAGTTTTTCT 15265 36 100.0 30 .................................... ATTCAAACATGCTTCTGATACAGGAGATTT 15331 36 100.0 31 .................................... AGATTTTTTCCTTGATTTTCTCGTTAGCTCC 15398 36 100.0 30 .................................... TGGAATTGTTTCTTGGAGGAAAACTGGCAC 15464 36 100.0 31 .................................... CTGAAAAAACGCTCAATGAGTGGCTAGAGAA 15531 36 100.0 30 .................................... TTCGCACTCCTCTATTTTAAAATCGTTTTT 15597 36 100.0 31 .................................... CAAAAACTCCTTTGGGTTAAAAAAAAAAAAA 15664 36 100.0 30 .................................... CAGCAGCGGCAGTATTCTATGCAACAGAAT 15730 36 100.0 30 .................................... ACCTATGATTTTGATGTCGATAGCGAGGAT 15796 36 100.0 31 .................................... TCTTTCACTTGCATATGATGAATGGAGACCA 15863 36 100.0 32 .................................... TTCACAAAAAGCATTTAATGAAACTATGCTAA 15931 36 100.0 33 .................................... TTTTGCTTTTAGATCTTATGCAAACACTTTTAG 16000 36 100.0 31 .................................... TCATTTTTCCACCTCCCCATTTTTTTTAGCT 16067 36 100.0 30 .................................... GTTATTCCCTCTGTCCATATATAAGCGTTT 16133 36 100.0 30 .................................... TTTTTCGCCTGTTACTTCACTCTCTAAAAT 16199 36 100.0 30 .................................... TTCAAATATTTGGATATATGGGATACTGAA 16265 36 100.0 30 .................................... CTCGGCCTCGGCGTAATCCCCGATGTCGTA 16331 36 100.0 30 .................................... CCCATGCCCTGTGGCAAGTGTCTTGCTTGT 16397 36 100.0 33 .................................... TAGTTTTGCTTGCTTAAAGTCTTTTAGGCTTTT 16466 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================= ================== 20 36 100.0 31 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : CTTTTTTATGATGCAATTTAGCGTGTATATGAAAATATGCAAAGGGTTAAGCTCGGCAAAAAGCTCTCTAAATGTTGTAAAAAAGGTGCTTCCACCTTATGGTAATGTCCGCGCACTTATCATCACAGAAAGACAATTCGACAATATAGAAATATTATTAGGAAACCCATCATTTAATGAGAATGTTAATGAAGATAAAAATCTTGTGCTATTTGACTTTGACGAAAATGCGGGTGATTACCGCTATGGTATGGAGTATCAAAAACAAGAAGAATTGAATACAACTACTACACAACCAAAACAAAAAATCAAAAATAGGCAACCAAGCCTATTTGAATTCTAGGGTTTTGATAGGGATATGATTTACCCTGCGGAAGACCCCTTACTCCCTTATTTTAGTCCCTTCTTAAACTTCTATGTCGCGAATTATAAAGGATTTCAGGTAATTTCCAGCTTAAAATCCTTTGAAATCCCTATCTATAGGCACCAACAGAGAGCCT # Right flank : CAACTCTCAAGGGGCGTTTTATTCCCCGGTATTCTAGCATATAGAAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 51-948 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZK01000045.1 Helicobacter cinaedi strain P19D1315 entry045, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 51 36 100.0 31 .................................... TTGACTGCCACGATTACCGCGATATGAGCTT 118 36 100.0 31 .................................... ACTTAAACACATCGTCCCCGGTGAAAGCGGA 185 36 100.0 30 .................................... GTTTGGATATATGGGGGCGAAGGACTCAAA 251 36 100.0 30 .................................... ATTCTTGGAGTCTTTCGATCACAATTTTGA 317 36 100.0 30 .................................... ATTATTGGATTTCTTTCAATTCGCCCAGAG 383 36 100.0 30 .................................... AGGACAGCCGCATACAACGCCCCGAATACC 449 36 100.0 30 .................................... GGCAGCAAATCAATTCTCCAAATCAGTGAA 515 36 100.0 31 .................................... TCAGAATCAAGCTCGAGTCCCTCGATTACGA 582 36 100.0 31 .................................... AAAAAAATCGTAGAAATCATAGAGAAAATCA 649 36 100.0 30 .................................... CTCTGAACCCTTTTTCTGTGACTTCAATAT 715 36 100.0 30 .................................... ACAGGTTTTTCCACATTGGAGGAATTTTTT 781 36 100.0 30 .................................... AAGCTAAGTTACAATGTGATTGTGAAGTAT 847 36 100.0 30 .................................... TGTTTGCTAAATTTACTAATCCTTTATTTA 913 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 99.8 30 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : GTTTAAGAAGGGACTAAAACCAACTCTCAAGGGGCGTTTTATTCCCCGGTA # Right flank : TTAGTGAGATTGAAGCCAATTGGATACGAATAATGGCAGAGCTAGAGACACAAGATGGCGATAGTAACACTTCATAGAGTGTGGTTGAGTCAAAGCAGAATTTTAATGCCCTAAATGACTTTAAAAGTTATGCTGATGAAAATCAAAAGCAAACAACAAATGGCTTTTCATTTGGCTCTGCGTTTTCTAAATTGAAAGAAAAGGGCATTGAAGCAAAAGAAGCCATTGAAAAAAAGCAGAATGCTAGATAAGGTTAAAGAAAAAACAAGTGAGCTGACAAACAAAGGACTTGAAAAAGGCAAAGGATTGATTGAATCTCAAAAACAAAAAGGGGCTAACAATGAGCGAGATTAAGAATAAAACATTTGAAGATAAGTACAATTTGTTGGGCAATACACTGCTAAAAGTTAATGATATTTTATCTAGTGATTTTAGGAGAGAGCTAGAATCTTTGAGTCCTTCTTCTATGAGTATGGATAAAAAACTTTTATTGTTTTCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 48364-47929 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZK01000061.1 Helicobacter cinaedi strain P19D1315 entry061, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 48363 37 100.0 30 ..................................... AAAGCACATTCAAAATAATGCGTAAAGAAT 48296 37 100.0 29 ..................................... AACACCTGTCCAGCGTGTGTATGTCCGCA 48230 37 100.0 29 ..................................... AGATTCTTTTACCAAAAGATAAATTTGTT 48164 37 97.3 30 G.................................... TTTGGAAGCGTTGGTAAGCAATAATAATCC 48097 37 100.0 29 ..................................... TATTTTTGTGCGTGGATTATACTTTAATA 48031 37 100.0 30 ..................................... TCAATTTAGAGCTTGGCGGAAGCCTATTTG 47964 35 83.8 0 A....................A--.........T.T. | T [47934] ========== ====== ====== ====== ===================================== ============================== ================== 7 37 97.3 30 TGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : GATTTGTGAGGGGATTGCAACGTCCCCTGCATATATGCGTGGCGAGTGT # Right flank : ACTCTAATGCTTTTACTTGTTGTATCAAAGTTTGTCTATCTTATGTCATTACTAGGGCTTTGCCAAAGTATATAATCCACACAAACAAAAATCCTGTTATTTTTCTACAAAGTCTTGTAAGATTCTTAAATTTAGCTAGAATGCTGTGTTAAAAAATGACATATTTAAAAGGAAATAGATGAATAACTTCAGTAAGATTGGCTTTGTTTTGGCGACTTTGGGTAGCTCCATAGGCTTGGGACATATTTGGCGGTTTCCCTATATGGCGGGGGAAAATGGCGGTGGAGCGTTTGTTATCTTTTATCTTATCTTAGCCATTCTCATTGGTGCGTCTATGCTGATGGCGGAAATGCTCCTTGGCAATAAGGCCAGAAGCAATCCTTTGGATAATTTTACTATCCTTAATAATCTTAATAAACTTCCACCAAACACGCCCACACAAGAGCATAACACCACAGATTCTAAATCTAGCTCATCACTTATGTGGCTTGGCTTTTCTA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 455-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZK01000099.1 Helicobacter cinaedi strain P19D1315 entry099, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 454 36 100.0 30 .................................... AAGATTTGCACAGAGTAAAGAGGCAAAGAG 388 36 100.0 30 .................................... TAAACTTCTCCCTATTGCGTGGTGTTTTTT 322 36 100.0 30 .................................... GGTAGATTCTGCGATGCACGAGCATATCAA 256 36 100.0 30 .................................... ATGTGATATTGATGTAAGCAATCGTGGATT 190 36 100.0 30 .................................... ACTTCACTTAGGTTGTTTGCAGCACCAGAG 124 36 100.0 30 .................................... ACATTTTTATCGCAAATTCTGGAATCTCTT 58 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : CCAAAAACTCTCATTTATAATTTTTATTAGATATTATAAAAATGTGTAAAAGAATAAAGCCTAAAATAAGATTCTCTATAAAATACCAAGATGATTTACTCTATTTTAACACCTTTTACCTATCATTAAGGCATTAAAAGCCCTTGTGGCATTCCCTAGTTAGGCGTTTTTTGACATTTTGGTATGACTTGTTTGGATAGAGTTGCGTGTTTTAGGATATTTCAAGCTTTGAAAACGCTCAAAGCACACACTAGAGCCGACTTGGAAAAGTC # Right flank : CTCGGTTGGCGGAATTGCTGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //