Array 1 128983-130658 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE610719.1 Peptoniphilus senegalensis JC140 strain type strain: JC140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128983 29 100.0 32 ............................. CTGTGATATAGTTTAAAGTGGAGATAGAAAGA 129044 29 100.0 32 ............................. AAGCCTTTTCTGCCTTGGGGTCTAAGACTACT 129105 29 100.0 32 ............................. GATAATAAGGGCATTGAAATCTTTGAAGGAGA 129166 29 100.0 32 ............................. CATGTTAAAGGTGTTGAAAATCAGACGCTTGT 129227 29 100.0 32 ............................. CACCTTTACCCAGCGTAAAATAACAGAATAAC 129288 29 96.6 32 ............................C CACGACGGGACAACAGGGTTTGTACAAGTTTT 129349 29 100.0 32 ............................. AATGTGAAATGGATTTAATATGACTACTTCTA 129410 29 100.0 32 ............................. ATATCCTGAACATAAAAATAATCATAGTCATT 129471 29 100.0 32 ............................. AAATATTAAATTTATGACTCTATCAACAATTT 129532 29 100.0 32 ............................. GGAAGAAAGCTGGAATGCAAGCACTAGGGTGG 129593 29 96.6 32 ............................C ATTGCTTGAATAGTTTCATCTCTGCCAGAAAT 129654 29 100.0 32 ............................. AATATTAAATGCAAATAACATTAAAAGCTGCA 129715 29 100.0 32 ............................. GCTGATGTTATGGAAAAATTAGGTATTTTGGA 129776 29 100.0 32 ............................. TTATGTAAGGACAAATTTTGTCCTAATTGTAA 129837 29 100.0 32 ............................. GAGATCCTTGGAAAAAGGGATTTAAATGATGA 129898 29 96.6 32 ............................C AACTCAGATTATGCAGATTATGTTGAATTTGG 129959 29 100.0 32 ............................. ATTAGGGAATGAATATACCTTGCGAGAAGTTT 130020 29 100.0 32 ............................. GATGTATTATTAAGAGTATCAAAACAACAACC 130081 29 96.6 32 ............................C AATCTTCAATTTCAAACTCTAAATTTTCAAAA 130142 29 100.0 32 ............................. GAAAAAAACATTTATTCAAAAATAATTGACAA 130203 29 100.0 32 ............................. GTTCAATGAATTTATTTAGAACACAAGTATGT 130264 29 100.0 32 ............................. TGCTTGTCCTGTTTCTGGCGATATGATAGATA 130325 29 100.0 32 ............................. GGTACATTCTTTGATACTGCTAACCCACAATA 130386 29 96.6 32 ............................C TTTAGAGCCAACAATTGGGAGAAGTGGTGGCA 130447 29 100.0 32 ............................. TAAAGAAAGTCTATCTGAAAAATGGGGCAGCA 130508 29 100.0 32 ............................. CACTTTGTTTTTACTTTCCATGCTATCCTCTC 130569 29 96.6 32 ............................C TTAAACCTTGGTGTTCCGTCAGAGTATCCGTA 130630 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.3 32 GTAGTCCCCGCGTGTGCGGGGGTGATCCT # Left flank : GACATAAATAATAATAAAATTATTGAAATAGGTGCAGTGAAAGTAGGAAAAAATAGAGAAGAATTTCATAGATTAATAAAAATTCAAGGAAAATTGCCAGAAGAAATAGTAAGGCTAACTAAGATAGATGATAAAATGTTGGAAAGAGAAGGAGTGCCTATAGGCGAAGCTTTAAAAGAATTTTTAGAGTTTATTGGAGAAAAAAATCTTGTTGGGTATAACGTAAATTTTGATGTACAATTTTTAAACGAAGCCTTGGCTAGAGAAAATTTGCCAAAGATAAAAAATAAAGTTTATGACATCATGCAATATGTAAAAAAAGAAAACTTATTTCTTAAAAATTATAAACTTAACACAGTTTTGAAAACCTATGGAATAGAGGAAGAAGTACCTCACAGGGCATTGGAAGATGCAATTTTAGAAGAAAAGTTAATTTTAAAAGTGAAAAAATTATTGGATATGTTAAAATAAAAAGGGCATGATTATGGGATCTTTTAACT # Right flank : TACTCTTCCAGAATTATCTCAAGATGAAAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCGCGTGTGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 131339-131672 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE610719.1 Peptoniphilus senegalensis JC140 strain type strain: JC140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 131339 29 96.6 32 ............................C TGATGCAGCGATTGCTTTGCCAATTCCTGCAG 131400 29 100.0 32 ............................. TCTGATTTTCCATTTTCTTGAAATTCTAGTGT 131461 29 100.0 32 ............................. AAAAACAAGTAAAACTCATATCCCACTAATTG 131522 29 96.6 32 .............A............... ACAGTTTCCGCAAGCTCGATGTTTGCCTCGAT 131583 29 93.1 32 .............A..............C TGATAGACAAGGACCACATAGAGCAGTCTTTG 131644 29 93.1 0 .............A.........A..... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTAGTCCCCGCGTGTGCGGGGGTGATCCT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTAAGGGTGCTAACTACATTGATTTTAGTAA # Right flank : TATATCATTAAAAGCAATTAAACCTGAAATTAATCAAGATAGGATTGATGGTATAGTTAATAAAATAAGTGAGTATGATGACTTTAAAGAGGGTAAATGGTTATTAGAAGAACCGATTAAAAACTTCACACAGAGCATAGTTGATGACACAATTAAAACAAATGCAGACTTTCAATATAAATCAGGGTTAACTCCTAAGATAGTGAGAAAAGAAGTTGGCAGTTGTTGTGACTGGTGTAAAGAAGTTGTTGGCGTATACGAATACCCTGATGTTCCAAAAGATGTTTATAAAAGGCACAGATTCTGCAGATGTACAGTTGATTATTTACCAGGCGATGGAAGAAAACAAGATGTGCATACTAAGAAATGGATAGATGCTGATAAGAACGATGAAATTCAAAAAAGAATTAAGTCCAGTGAAGATATAAGAGAGAGTAATAAGCTTGTTAAATTGTGTTTTAGAGAAAACATAGAATATAATGCAGTTAAGTTGAATAAAA # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCGCGTGTGCGGGGGTGATCCT # Alternate repeat : GTAGTCCCCGCGTATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCGTGCGGGGCTGATCCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //