Array 1 687064-686831 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CP039381.1 Ruminococcus bovis strain JE7A12 chromosome, complete genome Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ================================= =================================== ==================
687063 33 100.0 33 ................................. CAACTAGGGGATAAGAATAATTATTGGTAACTT
686997 33 100.0 35 ................................. GGATATATGTCAGTAAACAAAATTGGATATAAAGA
686929 33 97.0 34 .............T................... AGTATCGTTATAAACAACAATACTACTGTCTACA
686862 32 78.8 0 .......A..TG.T...........G.A-.... |
========== ====== ====== ====== ================================= =================================== ==================
4 33 94.0 34 GTCACCACCCACACGGGTGGTGTGGATTGAAAT
# Left flank : AGATGTGATGTAGGTGAAATACCCGGGAATAATTTAGAACGAATTGCACGATAAATAGAAGAAAAAGAAATCTTAATATTATGATTTAAATTCCATTTATCAGCTATTATTTCCGGAGACCAAAAGGAATGTAATTTATCAAATACATAATTATATATATCTGTGTATATGAGTAAATTATTTTTCTATGACAATCCTTTCTTCTTACTAAATATTTTACATGTGCGCCCCAAGGATGATAGTGTTTGCGTTTTTTACTAAAATTCCGTTTTAATTCTCTGCTGATTGTAGAAGGACTTCGTTCAAGTATTTTGCAATTTTTCTTATGCTATATCCTTTTTCGTAAAATTCTTGTAGACATTCTCTTTCAATTAGTGTAAGATGTGTATATGACAATATGATTACCTCCGTATTATGTTTGGTGTTGCAACTACATTTTACACGATGGTTTTCATATTGTCTATTTTTTTAGTGTTGCACTTGTTATTATAATCTAACCT
# Right flank : AATTTTTGTAAAAAATTATAAAAATTTATAAAATGGTGCAAAAACAGTTGCCTTTTTTTCGGTTATATATGCAACAACCAAACAAAGAGAAAACAAAGAAAAACAATAACCTTTTAGTTTATGCTTATAGACTGAAAGGTTATTTTGTTGCAGAAAGTTAAAAGGTGAGCTAATGAAAAAGTCAAATGAATTTATGGAAATGTTGCCTAGATTATTACAGGCAATGAAAAATGTAAATGATGCCGGTTATGTTGGTGTTCTTTCCAAGGAAGGTGCTGACAAATTGTGTCACATTACAAAGACATTACAGAAAATTCTGAAAAATTCAAAAGGAATTTCAATATCGCAGAAACCCTATGTTATCTTTAATGCAGTAGGTATATTGGTGTCATTTGACGAAATTATAATGAACAAAGAACAGATTAGTTCATTTGTATCATTATTAGGAAAGTATCAGCTAGATCCGGAACAGATACCATTAGATATGGTAAGTTTTCATG
# Questionable array : NO Score: 5.56
# Score Detail : 1:0, 2:0, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTCACCACCCACACGGGTGGTGTGGATTGAAAT
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5
# A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37
# Reference repeat match prediction: NA
# Secondary Structural analysis prediction: F [-10.80,-10.10] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0.64,5.28 Confidence: HIGH]
# Array family : NA
//
Array 2 693085-688178 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CP039381.1 Ruminococcus bovis strain JE7A12 chromosome, complete genome Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ================================= ===================================== ==================
693084 33 100.0 35 ................................. TAGGGTACTGATTTTTATTGCATAAGTCGAAAAAC
693016 33 100.0 35 ................................. TTAGTATGTCTTATCAATCCTTGATAACCATTGTC
692948 33 100.0 37 ................................. ACTGGTTCACCAACGATTAAAACCTCATCATCATCAG
692878 33 100.0 35 ................................. CTTATTTAGAGGGTATGAAAGGTACTGAGCCTGTT
692810 33 100.0 33 ................................. TAGAATGATACAAGATTGTTCAGACCTAAAGTA
692744 33 100.0 34 ................................. ACTGTGTACCTGTTCTCTGATTTTATCAGTCATA
692677 33 100.0 35 ................................. TGGTAGTTCAAGAGTTGGTAAATGTTTATTTGTTG
692609 33 100.0 35 ................................. ACAACAACAAGCATTGCAAATGTAGAAAATGAAGA
692541 33 100.0 33 ................................. CAAGAGGAAGCAAAGGAAATTTATATTAGTTCA
692475 33 100.0 35 ................................. ATCAAGTTATGCGTAAAGAGGTGCTAGGCAACAAT
692407 33 100.0 34 ................................. CGTCCCATTCCTATGCGATTTTTGTTTTTTTTGA
692340 33 100.0 34 ................................. TGATTATCGTTAGGCAATATAGATGCCTTCTGCA
692273 33 100.0 34 ................................. CCATTAGAACAGAGGACAAATGTTATTTTGAACA
692206 33 100.0 34 ................................. CGTGTTCCGAGATTTTCAAAAAAAACAAAAATCG
692139 33 100.0 34 ................................. TTGTTTGTGGTGTAGACGAACGACGAGTCATTCA
692072 33 100.0 34 ................................. AAGCATAGCGGCTCTATCGTATTTAACGCCTTTC
692005 33 100.0 34 ................................. GTCCTCATAGCCATTTTCAACCTCACACATACAA
691938 33 100.0 33 ................................. CATATGCAACTGCTCCCTTAATTCGTCATCCAT
691872 33 100.0 35 ................................. TTGCCGTTCTTGTCGGTCAAGCCTGTGTATTGTCC
691804 33 100.0 35 ................................. GTATCGTAATAGCTTTTACAGCAGTGTTGATAAAG
691736 33 100.0 35 ................................. CTTCGGCACCAGATGGACTTTCTGTTACAGCTGTG
691668 33 100.0 34 ................................. GGCAAGAACGATAAAGGCAATATCCTTAAACACG
691601 33 100.0 34 ................................. AAGTATCGAAGAAACACATTGGCTATATAAACTT
691534 33 100.0 36 ................................. TTTATGTACCTTGATAAAGACAAAGGATATTATGAT
691465 33 100.0 34 ................................. ACCTCTGCGAATAGAAATTACGAAAATAAAACCA
691398 33 100.0 33 ................................. CTTATTACGAAGTGCCAACTACGAGAAGTCCTT
691332 33 100.0 33 ................................. CTACTATTTATTTCGTGGTGCACACACAAGCAC
691266 33 100.0 35 ................................. CTTCAATGTTGTTAAGGGGTTGACCGATAAACTTA
691198 33 100.0 35 ................................. TTTAACAGCTGATGATATTGCTCGTAAAGTTGTTG
691130 33 100.0 34 ................................. CGAGCAAATACCGATGCTTTCTTTAGTTATGACA
691063 33 100.0 35 ................................. GAGTGAAAGCGGCATTTTCGAACAGTCCCGGCAGT
690995 33 100.0 36 ................................. TTCAATACAAGTTACAATACCATTTATTTCGGTAGC
690926 33 100.0 34 ................................. TCAAAGTATCGGCATACAAACTCTGCTTGTTTTC
690859 33 100.0 35 ................................. GTGGTGACTTTGCCTTTGACGATATTTTCGGCACG
690791 33 100.0 34 ................................. TTTGTATGGGATTGAAACACACTCTTTGTATTTT
690724 33 100.0 34 ................................. ACCTCGCTTGATGTAGTGACGAACTGCGTATCTC
690657 33 100.0 35 ................................. CCTCTTGCGACATCATTATAATACCATAGTAATTT
690589 33 100.0 33 ................................. TATACAATCAAATCAACAAATAAAGAAAGGCGA
690523 33 100.0 32 ................................. GAGAGGGAAGAAGAATGAAGAAGAATATACAA
690458 33 100.0 36 ................................. TTAACAGCAGAACATTACAGCAACAAAGAACAATGC
690389 33 100.0 35 ................................. CCACTCTGATAATGTTATCCAACTGCCCTTTTTAG
690321 33 100.0 35 ................................. CTAACTGCTGATGAATTTCTTTCCAGCTTTCACCT
690253 33 100.0 36 ................................. ACCATCTACAGTTATGCGTGATGAAGTCGGACGATT
690184 33 100.0 33 ................................. ACCTTTAATTTCAAGCGGTTCAGCTAACTTGTT
690118 33 100.0 35 ................................. AAGCATTAACAATTCAACACCTTCTAGCGCGGTTT
690050 33 100.0 37 ................................. AACACCTCTTGCTGATATAGAAACTTTGAAATCTGAT
689980 33 100.0 36 ................................. ACAGAATCGAATGGCGAATGATAGGTGGAAATCCTG
689911 33 100.0 34 ................................. TATTACCATATGACGATAGTGCTTTGGATATTGC
689844 33 100.0 36 ................................. TTAATCTGCATCAAAATGGTGGACCTTATGTGTACA
689775 33 100.0 35 ................................. TTAGGGTCAACTTTAGAAACGCTAGGACTACCGTT
689707 33 100.0 34 ................................. ACCTTGATTGGCTTGAAAATCTTGACTTATATCC
689640 33 100.0 36 ................................. TCCTTTACTGCTGTACCGTTTTATTTGATTTTGCCT
689571 33 100.0 35 ................................. AAGGCACGAGTATAAATATCTGCCTATATCATCAG
689503 33 100.0 35 ................................. TTTACCGAAGTGTTGATAATATCCACGAACGTACC
689435 33 100.0 36 ................................. TAGAAATGATAAGACTACTAGGGGACCATGGAAGTC
689366 33 100.0 35 ................................. TAAAACGATTACAACAACGTTATCAAAAGCCTTAG
689298 33 100.0 35 ................................. ACCACTGATGGAGGTTGTAGAAACTACAGATAGAG
689230 33 100.0 36 ................................. TTTAACCTCCTTTATTCAAATTATGAAGATTTCTTT
689161 33 100.0 35 ................................. TTTACCGAAGTGTTGATAATATCCACGAACGTACC
689093 33 100.0 34 ................................. ACTTTTGAAATTGGTGAACAAGATTACAATAATT
689026 33 100.0 35 ................................. GCTTGTTAGTGGTATTACTCAATCAATCCCAAAAT
688958 33 100.0 36 ................................. TAGAAATGATAAGACTACTAGGGGACCATGGAAGTC
688889 33 100.0 34 ................................. TCTAATTGATTAACGGATTGATGATATAAATTAT
688822 33 100.0 35 ................................. ACCACTGATGGAGGTTGTAGAAACTACAGATAGAG
688754 33 100.0 36 ................................. CTTAACAGATATTAAACAATAAGAGGTGATAATATA
688685 33 100.0 35 ................................. ACTCTTTTTAACTCTCAAAGTGATAACATCATATG
688617 33 100.0 34 ................................. TTGACAACAAGCAGACACCTGCACCGCTACCGCT
688550 33 100.0 36 ................................. AACAGTGTACTTGATTATATTGTTGAAAATAGTAGC
688481 33 100.0 34 ................................. TCGTAACAAGAGAAGTGATAGATTTTGTCACTAT
688414 33 100.0 34 ................................. CGATTGTTGGCGAAGATGATATAAGACACTCTGG
688347 33 100.0 36 ................................. TCATACTAGTTTTTTACACCACGAAAAAAGCAAAAA
688278 33 97.0 35 .............C................... AAATTATGCAGATTTTTTGACTAATTTAACAAGGC
688210 33 97.0 0 .............C................... |
========== ====== ====== ====== ================================= ===================================== ==================
73 33 99.9 35 GTCACCACCCACATGGGTGGTGTGGATTGAAAT
# Left flank : CGGTTATCCACCATTTATGTGGAAGTAGGTGTTACTATGTTAGTGTTAATTACTTATGATGTATCTACCGAAACACCTGAAGGAAGAAAGCGCTTGAGAAAAGTTGCTAAAGAATGTGTAAATTACGGAAAGCGTGTTCAAAATTCAGTTTTTGAATGTATTATGGATTCAGCAAAATGTTTTGAAGTTAAGGAAAAATTAGTGAAAATAATAGATAAGGATGAAGACAGTATAAGGTTCTATTATTTAGGAAATAATTACAAAACTAAGGTTGAACATTTTGGTGTAAATAACAACAATGTTGATGTGGAGGGAGTGTTGCTTTTTTAGTGCGATAAGTAACCTTACATAAGAATGCTAAGGTATTCGCACTAAATTTAAAAAGAAAACAAAATATAGTGATGTAAGTTTTATTTAGAATTGGGTTATTACATAAATAAAAAAAGTGATAATTTACAATGAACGGAAACTAAATAAAAATACATTTGTTATATTTTGCT
# Right flank : TTTAATCCTCTTGCCGTCTTTGTATTCAACAGTCTGCTTAGATTGTCAAACCAAGTGCAACACTTTGATTAAAATAGTCAATAGGTGAAAGAAGGTCTAAACATTTTCTAGGTCTATTATTAATTTTATCAAGGACTGCATCAAGTTGTGCTCTTGTGACTTTTCTGAAATCAGTACCTCTTGGAAAGAAAAATCTTAATAGTCCATTGATATTTTCATTTGAACCTCGTTGCCAAGGAGCATGAACATCTGCAAAATATATTTCTAAATCTAAATCTTTTTCAATATCAGCATATCCGTTAAATTCAGAACCATTATCTAAAGTTAATGTAAGTGGTTTGATTTTTAATGAAGCTTTTTCAAAAGCTTCTCTAAAAGCTGAATTAATTGATGAAATAGATTTATCTTTACAGGTAGCAGCTACAAGAAATCTTGATTTTCTATCAATAGCAGTAACAAGATAACCTTTTCCTACTGAACCGTAAATTGTATCTCCCTCA
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTCACCACCCACATGGGTGGTGTGGATTGAAAT
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5
# A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37
# Reference repeat match prediction: NA
# Secondary Structural analysis prediction: R [-7.50,-8.60] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.14 Confidence: HIGH]
# Array family : NA
//
Array 3 1642174-1643991 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CP039381.1 Ruminococcus bovis strain JE7A12 chromosome, complete genome Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ==================================== ============================== ==================
1642174 36 100.0 30 .................................... AGGTTTGCTATTGCAGTTTTATAAGTGTTA
1642240 36 100.0 30 .................................... CCAGGCCTGAATGGGTATAGGATGGCTCGA
1642306 36 100.0 30 .................................... CCGTATCATCTGAATAATCAGTAGGTACTT
1642372 36 100.0 30 .................................... AATAAATACATAGCAAGTTTTTGTCAATGC
1642438 36 100.0 30 .................................... TCTTTGCAATTGGAGAAGAGAAAGAAAACT
1642504 36 100.0 30 .................................... GGAGAACTTTTTTTACTTTTTAAATTGTAA
1642570 36 100.0 30 .................................... CTATGTCGATTAATTAGATATACTCATCCA
1642636 36 100.0 30 .................................... TTGAGTGAAGCTAACCTTGAATGGGTTTGC
1642702 36 100.0 30 .................................... ACAGAATCAAACATTGCTGTCCATCCCTTT
1642768 36 100.0 30 .................................... TTGAATGAGAACAACCTTGAATGGGTTTGC
1642834 36 100.0 30 .................................... CGCTTCCGCATAAAGGGCATTTATACATAT
1642900 36 100.0 30 .................................... TGTTAATGATAGACGAGGCAACGCAGATAA
1642966 36 100.0 30 .................................... TACTGACCGTATGACAAGTTAGTACCGTTA
1643032 36 100.0 30 .................................... TGAATTGTCTTATAATCTATCTGGTGAACT
1643098 36 100.0 30 .................................... ATTAGAACAACGAAAAATGAAATTTAGCTT
1643164 36 100.0 30 .................................... TACTCTTGCAGACATACATTCTCTGACTTA
1643230 36 100.0 30 .................................... TTTCAAAGGTTACAAAGTCAATATCCTTGC
1643296 36 100.0 30 .................................... GATATATCATCAGATATTAATAGTATTGTA
1643362 36 100.0 30 .................................... TTGGTAAAGCACACTTCTTTATCGTCAATG
1643428 36 100.0 30 .................................... ACAACTGCAATTTTTAACGAGCTAACCCAA
1643494 36 100.0 30 .................................... AGGACAAGTTACTTGTCTTGTTTTTATATT
1643560 36 100.0 30 .................................... AATAAATAATTGTATAAATCAAGAGATTAA
1643626 36 100.0 30 .................................... GCACAAATTGCACTAAATAACAGAGAAACA
1643692 36 100.0 30 .................................... CATTTTGTTTTAGTGCTCATAGCTACTTAT
1643758 36 100.0 30 .................................... AGTTTACAACACGGAATTAGAAGTAAAAAG
1643824 36 100.0 30 .................................... CCACACAATCGAAGATATACAGAAAGCAAA
1643890 36 100.0 30 .................................... GTGGACCGACTTCCTTCAATGTTGTTAAGG
1643956 36 97.2 0 .........................A.......... |
========== ====== ====== ====== ==================================== ============================== ==================
28 36 99.9 30 ATTATATCATACCAAGAATAATTAGGGAACTATAAC
# Left flank : AAAAGTTTATCTAGTTGGTATAATGATAAGAATAAATCTTTATTATTGCCACAGATTATTGATTTGGAACAACATACATATGAATAAATTTATGAGAATAATTGTATTTTTTGATTTACCTGTAAAAACAAAAAGACAGAGAACGGTTGCAACAAGATTTAGAAATTTTCTACTAAAAGATGGTTTTTTTATGGTGCAGTTTTCTGTGTATGCAAGAATTTGTAATGGCGTTGATGATGTTGAGAAACATAAATCAAGAATTAGAGATAATACTCCGGAAAATGGTTCTGTACGAATGTTAGTGATAACTGAAAAACAGTATGAAAGAATGGAAATTCTTATAGGTGATCTTGTAAATGAAGAAAAACAACAAGTATTTGAACAACTTTCTATTTTTTGATTTTTCTTGAGTTTCTGATTGTATTACTGTTAAAAATAATAATTTTTGCGCAAAGAAAACTCCCATAAACTTAGTGTTTATGGGAGTTTCTTTAGTCCCT
# Right flank : CATAATAACATCAATGCTATTTAACAATGTTATTATATCATACCAATAACAATAACCAAAGTCCCCAATATGGGACTTATCTATTATAAAACACTATAATTTTTCTTTTTCTATTGTGTTTCTAAAAATAAGTATGATATAATGCATAATATACAGAAACAAATAATAATAACTAATTATTTTATATAAATTTAATTATTTAAGGAGGATATTATGGATTATCAAGAAATTATGAGAGATATTGCAAGTGGTTTAACCGGTGAAAATGAAAAAGATATACAGTACTTAATGGAACAAATGGAAAAGTACAAAGACCATGAACTTGGAAAAGAGATTATCAGGGCTTGTGGTAGGCTGATAAGTGGAATGTTGCCTGAAGAAAAGGTCAATGAATTAGCTAATGCTTTTGAAAAAGATAATGCAGAAATCGAAAATGAACTTGATGATTTGTTTTCTACTCTACAATCAGGTGATTATAATTTAGCACTTGGAAAAGTAGA
# Questionable array : NO Score: 3.26
# Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : ATTATATCATACCAAGAATAATTAGGGAACTATAAC
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT]
# Reference repeat match prediction: NA
# Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37
# Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [0.41,0.27 Confidence: LOW]
# Array family : NA
//
Array 4 2075977-2078709 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CP039381.1 Ruminococcus bovis strain JE7A12 chromosome, complete genome Array_Orientation: Unconfirmed
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ==================================== =============================== ==================
2075977 36 100.0 31 .................................... TTTATACAAGAAATTACAAGAAATGAGGTTG
2076044 36 100.0 29 .................................... CTATTAGCTCTGGTTTAGACTCCGTTAAA
2076109 36 100.0 30 .................................... AATCTCTTGCAAACTTATTCAAAAAGGAGG
2076175 36 100.0 30 .................................... TAAGAATTCAGCTGAAACATTTGTTGTATT
2076241 36 100.0 29 .................................... CTATAACGCAGTTATGAAAGTATTGGAGG
2076306 36 100.0 30 .................................... AAGTGTTTAACTTGTTGTTTAACAGTTAGT
2076372 36 100.0 30 .................................... GACTTGTCTTTATTCATCATCAAAAATATA
2076438 36 100.0 30 .................................... ACCTGACAAGACCAAATGTGGAAACCCTTG
2076504 36 100.0 29 .................................... AAAAAGTTTGGTTATTTAACAATAACCAA
2076569 36 100.0 30 .................................... GTAGTAATGTTTCTTTTAGGAAAACATATC
2076635 36 100.0 30 .................................... GTCTTTTTCAATTTGTTTTCCTCCTTGTAT
2076701 36 100.0 30 .................................... ATTAACGCTTATGCTGAAGCTATTGCAGCA
2076767 36 100.0 30 .................................... TTTAGAAATAGTGGAGCAGTAATGCTTCGT
2076833 36 100.0 30 .................................... TGAGGGTCAACCTCTCTTCCGTTGCTGTCA
2076899 36 100.0 30 .................................... CAGGCAAGGCGGCAGCTTTATAGCCAATTT
2076965 36 100.0 30 .................................... CTTTTCATCTCACCGCAGCCCTCACAGAAG
2077031 36 100.0 30 .................................... AGTGTTGACTTTATATAATGACGGCAGTAT
2077097 36 100.0 29 .................................... TCGTCAAGTAAGACAGAGTCATTATCACT
2077162 36 100.0 30 .................................... TGATAGCAACTTGAATCTATTGCTATTAGT
2077228 36 100.0 31 .................................... TATTAGCGCTCATGTAGTGGCTGAAAAGCCG
2077295 36 100.0 29 .................................... CTATACCTAAGAATGAAGGTGACTATCTA
2077360 36 100.0 29 .................................... CGATAGCAGATAATAGTTTTGTGCCAGTG
2077425 36 100.0 30 .................................... TCAGCCCAAAGTTTAAATGTATCGAGTAAA
2077491 36 100.0 30 .................................... AGGAGTAAATAAAATGAGCAAATTTATTAT
2077557 36 100.0 30 .................................... ATCTGGTGCAATCATCCCACCGACTGAGGC
2077623 36 100.0 30 .................................... TTCTTAAGATCGATCATCAAGCTGATCTTT
2077689 36 100.0 30 .................................... ACAACAACCATTTAATTAAAATCAGGAGTG
2077755 36 100.0 29 .................................... CAAGAAGTGTTCAGCAATTATGGACCTTA
2077820 36 100.0 30 .................................... TTATGGTCTCGTGAGCTTGCTCACCTTTTA
2077886 36 100.0 29 .................................... AACTTCAGATCTTCTTAAACCTGTAGAGC
2077951 36 100.0 29 .................................... CCGTCTGTTGTTTCTTCGATAATCAAATA
2078016 36 100.0 30 .................................... CCTACTAACAACAACTTGGACAGAAGGCAA
2078082 36 100.0 30 .................................... CTTTACTTCTCTGATGTGTCCGCGCACATA
2078148 36 100.0 29 .................................... GTGTATTACAAAAGCAAATTTATAGAACA
2078213 36 100.0 30 .................................... TTGTAACTGCATTTTTATTCCTCCTTTTTG
2078279 36 100.0 30 .................................... TGGACTTTGATACTTGTTGACAACACTGTT
2078345 36 100.0 30 .................................... CAAGGTTTTTCTAATTCTTGAAGCTGTTGT
2078411 36 100.0 30 .................................... AAGGTTGCCAAAGCCGACGGTGAAACCTTC
2078477 36 100.0 29 .................................... TAGGAGTTACGGGGCTAGTGAGCCTAAGA
2078542 36 100.0 30 .................................... ATAAGAAAAGTTCGGATTTGGTGAGGTACT
2078608 36 100.0 30 .................................... ACACTTACAAAAATGGCAGAGGATAGAATG
2078674 36 100.0 0 .................................... |
========== ====== ====== ====== ==================================== =============================== ==================
42 36 100.0 30 GTTTGAGAGTAGTGTAATTTCATAAGGTATTAAAAC
# Left flank : TGATTTAGAATTTATTTGTAATTCAAAGTATTTTGATGAATTATCAATGATTAAAGAATTATGTACAAAGCTTTGTTATAATCTTTGTGAAGAAAAAGAATTTGATTTTACGTTTAATGATGAAATAGAAACAAGTGCTTTTATAAAACTGTTTTCTTTCTCTCCTAATAATGATTCTTCAGGTGTATTGGAAAAACTTTTATTGTATATTAATTTAGTAAATAAGTATCTAGGTATTAAGTGTTTTATAACACAAAATCTCTATATTTATTTTAGTTATGATGAGATTTTATCATTTTATAACACACTTATTGCTCACGATATTTATTTAGTAGATATAGAAAATATATTTCCAAATCAAATTACTTCTCTAGAAGAAGTAATAATAATTGATAAAGATTTATGTGAGATGATTGACAAATAATATAAAAATGTAATAAAATTAAGTAAAATATCTTATGAATTTACCATGCACATGTAGTGGATGCATTCTATTTGAG
# Right flank : CAGCAAAGATTTTGAACAAGTCCGTAAAAAATGGACAATGGAAAAAACACCCTCTTGATGTAGAATATACATCAGGAGGGATTTTTAATGCCAAGAAGTTACCGACACATAAGTAATTACGAAAATGAAATATTAGAATTAAAATCAAAAGGGTTTACTGTGATAGAAATAGGGGCAAAACTTGGTTTTACTCAAAAGCAAGTACATAACTTCATCACACGATACAATAAGAAACAACGAATGCTTGAAGCAGGAAAAGTAATTCACAAGAAGGGTAGACCGCCAAAAGATTATGAAGTCACAGAAGATATGAAAATCAATGAGTTAAAATATATCATAGCTCGTAAAGATTCAAAGATAAAACAATTAGAAATGGAAAATGAATTAATGAGGGATTTTCTCTCGCACACAGGAAGGAAGTGAAGCCATCAATAAAATATCAAGTAATCTTTAAGCACAAAGATAAGTATAGCATAAGTCAAATGTGCAAATTCTTTGGA
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTTGAGAGTAGTGTAATTTCATAAGGTATTAAAAC
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT]
# Reference repeat match prediction: NA
# Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: NA [0,0 Confidence: NA]
# Array family : NA
//
Array 5 2108163-2108640 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CP039381.1 Ruminococcus bovis strain JE7A12 chromosome, complete genome Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ==================================== ============================= ==================
2108163 36 97.2 26 .C.................................. TGCTAGGTGTAGCCGTAACGATTGTG
2108225 36 100.0 29 .................................... CTCCCATTTTGTCTAGGTATTCAAAGACT
2108290 36 100.0 27 .................................... AGAAAGCAATAGACGACTATATCGACC
2108353 36 100.0 28 .................................... TCGCAATAAATATGAAGAAGTTCGGGAG
2108417 36 100.0 27 .................................... AAATGCAGGTATTTCACCTATATTAGC
2108480 36 100.0 27 .................................... ATGGTAACTATCTTTACAATGGCATTA
2108543 36 91.7 27 .......A.T..T....................... CGGAACAACATAATCATTGTTGATTGT
2108606 34 88.9 0 .......-........T......-........G... | T [2108619]
========== ====== ====== ====== ==================================== ============================= ==================
8 36 97.2 27 GTTTAATCAACCCTTAGAATTTCTACTATTGTAGAT
# Left flank : AAGATTCAATTTTTCTATATATTCAGTCTTACTACAGAGCATTTATGAAGAAATTAGATGTGGATAAATTTCCTGTATTTGACATAGGAGAATAATATGATTATAATTAGTTATGATATATCTGATGACAGAAAACGCAGTAAATTTTCAAAGTACATTAAGCGTTTTGGTCATATGTTGCAGTATTCTGTATATGAGATTGATAATAGTGAAAGAATACTAAACAACATTATTGCAGATATTAATAATAAATTTTTGAAAATGTTTGACCAATCTGATAGTGTGTATATCTTTCAGTTAAGTAGTTCATGCAAAGTTCAAAAATTTGGTTATGCTAAAAATGAAGATGAGCCTTTGCTTGTTGTTACATAATTTGCAAACCTCAGTCTTTATTTTAGATATTCTTTGAAAAAGGTTGTTAAACAATGAAGATTATATGCACAATGAACAATTGCATAAATTACCAAGATGTAATTTATGTAGGGTTAAACAAAGTTAGG
# Right flank : TATGTGTATGAAATCTTCATAGGCTCTAGTTTAATTAATCCATATTTATGAAATCAGCCACCAAGTAATATTTTGGTGGCTTTTTGTATAATCAATATTGTGTTTTAAAAATAAATGTAGTAAAATATCATTGAAATTTAGTGAAATGATAGGTGACTTATGAAGTACAAATTTTGTCCACAATGTGGCAGTGAATTAAAGCCTAAAATGGCAGGGGATGATGGTGAAGTACCATTTTGTTATGAGTGCAACAGATATTGGTTTGACAGTTTTGAGAGCTGTGTAATTGTTCTGGTGTACAATGAATTTGATGAAATTGTAGTTTGTATGCAAGATTATATTTCCAAAGTTTATGGCACAATTACTGCCGGATATATTTTGCTGGGGGAAAATGCTGAAGAAACTGCCTATAGAGAAGTGGAGGAAGAACTAGGCATAAAGCTTGATAATCTTCAGTATGGTGGTACATATTGGTTTGAAGATGGTGACAAACTTATGCA
# Questionable array : NO Score: 3.01
# Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTTAATCAACCCTTAGAATTTCTACTATTGTAGAT
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT]
# Reference repeat match prediction: NA
# Secondary Structural analysis prediction: R [-0.10,-1.90] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [0.41,0.37 Confidence: LOW]
# Array family : NA
//