Array 1 1412527-1407972 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009170.1 Thermoanaerobacter kivui strain LKT-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1412526 30 100.0 36 .............................. TGATATACCAGCAACAGCCATGGCAATTTGTCTTAC 1412460 30 100.0 36 .............................. TAATTTTTCGCCTGTTTTATAAAAACTGAACCTTTA 1412394 30 100.0 36 .............................. CAAGCAGGTAGACCTGCTACTTTCGCAGGATATCAG 1412328 30 100.0 38 .............................. CCTGAGAGGCCGAAAAAGCAGTGGTAGCACCTAACTGC 1412260 30 100.0 37 .............................. CACAATATGATAGAATGCTGGATAGGCAAATCAGGGC 1412193 30 100.0 36 .............................. GAATAGAACGGTTAGGATTACTGTACTCCTTCCACC 1412127 30 100.0 36 .............................. CTATTCTGATCCTAGTATTCCTAGCTTTAGAAACGT 1412061 30 100.0 37 .............................. CTTTCATAGAAGAATGAACCTCCCATGAATAAAAGAA 1411994 30 100.0 38 .............................. AATACAATATTCATCTCAAAAACCGCTGCTTCTATCAA 1411926 30 100.0 37 .............................. CCACAGCGCCAAAGTGAATCTGTGGCAACTTATCTAC 1411859 30 100.0 36 .............................. GGGAGGAGATTTTATATTTTCCTATTTTACATTATA 1411793 30 100.0 35 .............................. CCAGGCAAGTCAGGTGCATAGACAGGCGCAGAAAT 1411728 30 100.0 36 .............................. ATGATATTATGTTTCATCTTTCACTTAATAAGCCTG 1411662 30 100.0 36 .............................. GAAAGAGACTCAGAAATAGAAGGAGAACTTAAATAA 1411596 30 100.0 36 .............................. CTGTAGAAGAGGCAAAAGAAATTATGGCCGACGGCT 1411530 30 100.0 36 .............................. AGGAATTAGGAGCAGAGGGCTTTGTTATCCGGGCTA 1411464 30 100.0 38 .............................. ATATATCTGCTATACCCTTAGTAACTGTTCCATAACCA 1411396 30 100.0 36 .............................. CTTTGTACGTTTTCTTTAGAACAGGTAGCGAACCAA 1411330 30 100.0 38 .............................. TGGGGAAGAAGTGAAAATAAGGATAGCGATGGATACTG 1411262 30 100.0 37 .............................. AATGATGAACCTATTATTGTTCTTGATGCAAAAGCTC 1411195 30 100.0 35 .............................. GTATCTGGCTCGTCCTCCTTTCTGGATACAGGACG 1411130 30 100.0 38 .............................. TCCAGAAACAAGATGCCTCTTCCTGCTTCTGTAAGCCT 1411062 30 100.0 38 .............................. CCATTCTTTGGCAAAACGCTTTACGGGTCTTGCCAACC 1410994 30 100.0 36 .............................. TTCCCAGGTTAGCCCAAGGGTATTCAAGTCGCCCCA 1410928 30 100.0 36 .............................. GTGGAATTCCTTTAACGCCTATAAACTTAATAACAA 1410862 30 100.0 36 .............................. TGAAGAATATTCCCTGCATATTCCAAATGTCCTTGG 1410796 30 100.0 39 .............................. TTTTTATAAATGTAACCTTATAGGAGCTAAGCAGCCATA 1410727 30 100.0 36 .............................. TGTAACGGAAGAAACTCTGCGTAACGCGGCGATAGA 1410661 30 100.0 37 .............................. GCACCCAGTCTCCGTTTTCTTCCTGTAGCACCATGTA 1410594 30 100.0 36 .............................. TCCATCTTTACCGTCACCGTACCCTTAGCATGGTCA 1410528 30 100.0 37 .............................. AAATGCGGGCTAATCCTTTTATGAGCAGAGCATACGA 1410461 30 100.0 36 .............................. GTCTGCAAATACTTCCGCTTCTGCTTCCTCTTCCTC 1410395 30 100.0 36 .............................. GTACAAGAATTTTCAACAAAGCTTGGCGGGCTTTCT 1410329 30 100.0 36 .............................. AATGGGAAGAGATAAAGTAAAAGCTGAGTAAAGGAA 1410263 30 100.0 39 .............................. GCCATCCAAGCCGCCTCACCTACCACAGCGATTACGTTG 1410194 30 100.0 38 .............................. AACCCCTGTACCCAGTGCCGGGCTCCCACGTGCGGTGT 1410126 30 100.0 37 .............................. CAGCAATGCCCCAGCCGATGTTTCCCAGCTTAGCTTC 1410059 30 100.0 36 .............................. AAGAACGATGGAGCGAAAATCTCAGGAGCAAAACAA 1409993 30 100.0 38 .............................. TTTCTGAGAATGCATTTTGCTATCCTGCGCCATGAAGG 1409925 30 100.0 35 .............................. CAAATAATCTGTTTGACTTATATAACCTTGAAATT 1409860 30 100.0 37 .............................. CCACGTTCGCACCCTCCGGGCACCCCGCACCACGCTT 1409793 30 100.0 37 .............................. CTCTGCAGCACGGCAAAAAGGTCCTGCGGTTTTATCC 1409726 30 100.0 36 .............................. TAAAAACGCGGTACTTCATGACTGCTCTACCTCCTT 1409660 30 100.0 36 .............................. TGTCATGACAGCTTGTGCAACGCATTGCAAGAAAAA 1409594 30 100.0 35 .............................. TAGCGACATAGCATTAAGAAAGGCTGAAAAAGCGA 1409529 30 100.0 37 .............................. GACTTTGACAATTTTCCCCATACTGGCGGACCTGCTA 1409462 30 100.0 36 .............................. GCCTACCTCCGGATGTTCCTCCGGAGTGGGAGGACT 1409396 30 100.0 36 .............................. GCTACCGGAAAGGTGTCCCTTGACAAACGAAGCACC 1409330 30 100.0 36 .............................. GGAAATCTACCAAGAAGCGCCTGCGCGCTTCTTGGT 1409264 30 100.0 36 .............................. CAGGGCGCCCATCAGAGTGGTTCTTTAATCATTGTG 1409198 30 100.0 36 .............................. TACTACCCAAAGGGCATACATGGAAGTCATATACAG 1409132 30 100.0 37 .............................. GGAGGGAGACGATGTAATAAACTCCCTCCTGGACGGG 1409065 30 100.0 35 .............................. GGGTGATGAAAATGCGTGACTTGTCGTTTGAAGTG 1409000 30 100.0 38 .............................. GTAGTGGCAGCTATTTAGAATGGGGCGGATATGCAGAA 1408932 30 100.0 37 .............................. TGCCGGGTGGGGTATTTCTTACGCGCCCCACATGTGC 1408865 30 100.0 36 .............................. TATGCCATCATAGGTGCAACACATGAAATGAAAGCA 1408799 30 100.0 36 .............................. CGGTAGATACAAGCCGTAAACTGGTTGGCTCTGGTT 1408733 30 100.0 37 .............................. TATCGCTTTTGTTGACTTTAAACAGCGGTGTTAAACC 1408666 30 100.0 36 .............................. ACAATTTGAACGATGCACTGCTTTTGAAAGATAAAG 1408600 30 100.0 37 .............................. CGCACAACGGCTCTGGGCTGATGATTAGCTCTGCAGA 1408533 30 100.0 37 .............................. TTGGGATGGTGAAGGCAATGGCTGAAGTCGGGAGCAT 1408466 30 100.0 37 .............................. ACCAGGAGGATTGCCGTTTACATACCGTCAAAGCAGG 1408399 30 100.0 36 .............................. TACACTCCTGCAGGCACTGGTTCTGGAGTGTCAAGA 1408333 30 100.0 37 .............................. AACAAAGAATGTCTATTGCTGCTAAAATCGCAGCAGG 1408266 30 100.0 37 .............................. CTCATGTCCATCTGTATCCTCCTTTTCTGCCAAATTG 1408199 30 100.0 36 .............................. CTTTTAACACCTGACCTTGCTAAAAGCACGTCTATA 1408133 30 100.0 36 .............................. CAAAAAAACTGAGATGGCTTAGCTTTAAATTCATTA 1408067 30 100.0 36 .............................. AATATTCCGAGGTTAGAAATTGAAATAGAGGAGGTT 1408001 30 96.7 0 ...............G.............. | ========== ====== ====== ====== ============================== ======================================= ================== 69 30 100.0 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : ATAGGTGCAGCTTTTAACAAAGTAGTAAATTCATTAGTTGTGGATGTTTTAACTCCACTGATTGGAGCAATATTTGGAGCTCCTGATTTTTCTGCCCTTAAATTAGGACCAATAGCCATAGGTAATTTCCTTAATGCTGTTGTTAACTTTATTATCGTATCTGCAGCCATATATTTTTTCATAGTAGCTCCTATGAATGCTATTAGACTGCGAAAAGCAAAAGAAAAAGAACAAACACCACCTGAACCATCAGAGGAAGTAAAACTTTTAAGAGAAATATTAGAGGTATTAAAGGAAAAGTAAGGTAAGAATATTGATTAATATAAATTTGTCGTCGACCTAAGATAATGCAAAAAATGTTGAGGATCGACGACAAATTATTTTTTCAATTTTATAAAATAGTTGATTTTGTCAAACAATATGGTATAATAAAGTTAAAATACTTGACAGATAAGATGAAAAAAGAAAAATTTGTTCTTTATTATATTTGATTATAATGG # Right flank : CATCTTACACAGTGGTATGCGTCTTTTGCAACATTTAGGTTTTTAGCCTACCTAATTAACAAAACAGTAATATAATGAAATGCAAGGATAAAGAAGATGTGAAGCGTAGAGAACAAAATAGAAAATTATTTGAAAGAAAGGAGTAAGAAAAAATGAGGATAGTAGTAGCTGCAGAGAGTAAAAATGTATCTATGCATTTTGGACATTGTGAGAGATTTGCTTTATTTGATATAGAAAACGGAGAAATTAAAAATGAATTGTTTATACCAAATCCAGGGCACAGACTTGGTTTTCTGCCCGGATTCTTAAAAGAACAAGGTGCAGAATGTGTAATTGCAGGAGGTATGGGTGCGAGTGCCGTAGGACTTTTCAATCAGAATGGTATAAACGTAATAACCGGTGCATCAGGTTTTATTAAAAATCTTGTAAAAAGGTACATTGAAGGGACTCTTATTTCCACGGGCAGTGTCTGTGAAAAACATGAACATAAAGGACATTAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 2273800-2268104 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009170.1 Thermoanaerobacter kivui strain LKT-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 2273799 29 100.0 38 ............................. CGTTAGAAAAAATATTCCCCTCATGTTCCAAATGTCCT 2273732 29 100.0 40 ............................. CCCTTTTCTTTTCCTTCCTCTTGCGCCTGTCCTATTGTGC 2273663 29 100.0 38 ............................. CTTGGAGTAGATATAGGATGCGGAATGGAAGTAGCCAT 2273596 29 100.0 38 ............................. CCCGGATACTTCCCAGATGCGCATATCTTCTTGTAATT 2273529 29 100.0 37 ............................. CCATTTTAGAAACGATTCTGAGCCAAATTTGTGCCTT 2273463 29 100.0 37 ............................. CCATTTTAGAAACGATTCTGAGCCAAATTTATGCCTT 2273397 29 100.0 39 ............................. CCGCACAATCCGAACAAGTACTTCTTTTCGCATGAAAAA 2273329 29 100.0 39 ............................. CAACATAAGCAGATACACCTGTTCTCATATTGGACATAG 2273261 29 100.0 36 ............................. CAAGAGTGGCAGTCAAAACAAAATGGAAGCTTGCAA 2273196 29 100.0 37 ............................. CAAATCTTTATAATGCTGTTCAATCCATTCTTCTATA 2273130 29 100.0 37 ............................. CTGATGCAAAAGCATTTGTATTCTCTATAATAACACT 2273064 29 100.0 37 ............................. CTAGACTATCTGCAGCTGCTGAGAACAAGAGAAAAAG 2272998 29 100.0 38 ............................. CATTGTTGATAACGAGTGTATCCATTTGGGGGATTATT 2272931 29 100.0 37 ............................. CACCTCTGCAACCTCCCTGCACATAAAGGTATCTTTT 2272865 29 100.0 37 ............................. CAAACCTGTGAACAGCTTTATTTTTTTGCGCACAGAT 2272799 29 100.0 39 ............................. CATAAGAAAGCTGAACGGCTATCAGGACAAGCGCCTATT 2272731 29 100.0 38 ............................. CAAAATAACACAGTAGATGAGTTGCCACAAATTCATTT 2272664 29 100.0 38 ............................. CCCTTTTACGCGAAGCAAAAAATACTTTTCTCCGTCCT 2272597 29 100.0 37 ............................. CATAAATTTGTGAGGGCACTCATATTTTTATACCCAA 2272531 29 100.0 36 ............................. CACAGACCACCTCCTAGCCGTTGTACTCCCGGGTAA 2272466 29 100.0 38 ............................. CTTTAGAAGCACAATTTAAAGAGAGTGACGCATTTATA 2272399 29 100.0 37 ............................. TGCAGTAACTCTAAATGCTAGTGAGGTAAAAGTACGT 2272333 29 100.0 40 ............................. TCAAAAGCGGGATACCAATTTGGAGAGTTTGGTATCCCGT 2272264 29 100.0 37 ............................. TAAGAAGTTTGCTGAGATGTTTGTAAGTATGCTGGAA 2272198 29 100.0 38 ............................. TCCATACAAAACAAAACCTTTACTTAGCAGTGCTCTAC 2272131 29 100.0 40 ............................. TATGATGTTTTTACTGCTTCTTCTAGCCTGATTAGTTCTT 2272062 29 100.0 37 ............................. TGAAGTAGATGAAGGAGGTGAAGATGAGGATAATGCT 2271996 29 100.0 37 ............................. TGAAGTAGATGAAGGAGGTGAAGATGAGGATAATGCT 2271930 29 100.0 37 ............................. TGGAGTAGAGAAATACACATATTTATTGCCTTTTCTT 2271864 29 100.0 39 ............................. TAGAACTATTCCGGAGTGATTAAGCAGTTGGTTGACTTA 2271796 29 100.0 37 ............................. TTCTTCTGCAACGTCTACACCTGACTCTTTCCATATT 2271730 29 100.0 38 ............................. TGAACCTTGGCAATTTTCCCATACTGGCGGAACTGCTA 2271663 29 100.0 38 ............................. TGTACATACAATCTTTCGTTTTTCTTCTCTTCATCGTA 2271596 29 100.0 37 ............................. TAATGCGTATACGACTCAAAACCCATTGCACGCCCAG 2271530 29 100.0 41 ............................. TAGCATTCTTGAATATGGACTCTTCATAATTACTCACTCTT 2271460 29 100.0 41 ............................. TGAAATAACAAAAGAAATCTGGCCTATATAGAGGCCATCCT 2271390 29 100.0 37 ............................. TTCACTTGATGCAGTCCTTATAAGGATATTTTTATCC 2271324 29 100.0 36 ............................. TCGAAGAATGGAGAGGATAAGAATGGATACAAAAGA 2271259 29 100.0 36 ............................. TTCCTGAGCTAACGGAAGAAGAAATAGAGTATCTTA 2271194 29 100.0 42 ............................. TTTACTACTGCTAGAGCTACTGCCAGGAACAGCCACCAGCAG 2271123 29 100.0 38 ............................. TGGTACAAAATAATAATCTGCAAAACTCTGCATATGAT 2271056 29 100.0 39 ............................. TCGCCAATTTAGCCCTAATTTTTAGCCCCTTTTCGTCTT 2270988 29 100.0 39 ............................. TCGCCAATTTAGCCCTAATTTTTAGCCCCTTTTCGTCTT 2270920 29 100.0 36 ............................. TCCGATGTAGTAATCTTCAGCCGTTTTCTTAATATC 2270855 29 100.0 39 ............................. TAAATCCCAAGGGGCATTAGTGCTGCTATCATGCTTGTT 2270787 29 100.0 39 ............................. CGCTGAGGTAAGCATTTCCCCCAGCGACTGCCATCCTGA 2270719 29 100.0 37 ............................. CGTGTATGCAACTTTAAAATATTCTATACTGCCCTTA 2270653 29 100.0 37 ............................. CCATCATATATAACATTTTTACCCTCTTTTAAATATT 2270587 29 100.0 39 ............................. CATGCGTGGACTGAAGGCAGATTAGACCTGATAACAAAA 2270519 29 100.0 37 ............................. CCGCATTAGAAGACAAATAAAAAAATTAGCTAGTGAT 2270453 29 100.0 38 ............................. CTATCCCGCCCCGGCCACCGGCGGGTTTAGAAATACTC 2270386 29 100.0 37 ............................. CTCTGCACTGCCGAAAAATATTTTCCCGCCGGTAGGC 2270320 29 100.0 37 ............................. CCTCGTTTGCTACTGAGAGTACGGGAACCCGGTACCA 2270254 29 100.0 37 ............................. CATTTTTAGCGGAAAACATCGTGCCCTTAGTATAGCT 2270188 29 100.0 38 ............................. CGAGGTTTCCAGCGTGGGAAACCCTTTATCCGCACCGC 2270121 29 100.0 38 ............................. CAAGGCCTAATCGCCCCGCGGATTTTTTATCTCGTCAG 2270054 29 100.0 37 ............................. CTTATCCAACCGCTTCCATTACAACGTGTGCATACTG 2269988 29 100.0 37 ............................. CTGTATTCAGACACGTTTTCTTTACCCAAGTCATCGA 2269922 29 100.0 37 ............................. CTCCCCGTTCATGAAAGTCCTGAAGCATTCGTTTTTC 2269856 29 100.0 37 ............................. CGGAATATGCTAGTATTCCCCTCCCCCATACCCCGCT 2269790 29 100.0 36 ............................. CAAATCATCCGGTTCCGGTATATCGTACTCAAGCCC 2269725 29 100.0 37 ............................. CGCGACCTTCTGAAAGGGGATGATGGGAAGGTGGAAA 2269659 29 100.0 38 ............................. CTCATGCGCTGTAAGCCAAACCTTTACTACTTCACCTC 2269592 29 100.0 36 ............................. CGCGAGATACTCGCTGACATGAAGAAGGGTATGGAG 2269527 29 100.0 37 ............................. CAAACCATACGATTGCATTTTTTGTTTGGCCTTCTTC 2269461 29 100.0 37 ............................. CAGCTGGCAGACCGAATACCTTTGCAGGCTATCCTGT 2269395 29 100.0 37 ............................. CACCTGTGCCAAGGCAGCGTCAATCTCGGACAGCGTT 2269329 29 100.0 37 ............................. CACAAAAAAGGAGGATGAATAAAAATGGCGACATGGG 2269263 29 96.6 37 ..........G.................. CATTAATAAAATATCAGAAATACTTGGAAAACCGGCA 2269197 29 100.0 38 ............................. CATGAAAGGGTCTGTGTAGTCGATTTGAATTTTTGCAT 2269130 29 100.0 38 ............................. CAATGTTTCAATGATTTTTTCTAAATCACGATTTTCCA 2269063 29 100.0 37 ............................. CCGGTTATAGTCGGGCTTTCAATCATAGGCGTTGCTA 2268997 29 100.0 39 ............................. CATTCCTAATATTTCCGAGAGAACCTTGGCGGTTCCCTC 2268929 29 100.0 38 ............................. CCAGTACAAGTAATGTAGAAGAACTTACAAAAGAGCAG 2268862 29 100.0 39 ............................. CAGGACAACCTCCTCTCTCCATCTTCTAGTTTTACTAGA 2268794 29 100.0 37 ............................. CCCTGCCGGAGTGGCAACCTCCGGCAGGCGGAGAACC 2268728 29 100.0 38 ............................. CAATGCAACCCTTTTGCTACCCTTTAAAACAGAAATAA 2268661 29 100.0 36 ............................. CACTACGCAGGATATTTGCACCGTTATAGGGCACTA 2268596 29 100.0 37 ............................. CAAGCAGCTAAGAAAGCACCTTCTTGGCGGAGGATAG 2268530 29 100.0 36 ............................. CTTCGTTGCTGTATTTTTTCAGTCTCTCGTGTAGTT 2268465 29 100.0 39 ............................. CTATATTCAAATGCCCGGAAGCCTTGATTTTTCTGGAGC 2268397 29 100.0 37 ............................. CGCTGTTTGTCAATCAGCTGCTTGTCAATCAGCTGTT 2268331 29 100.0 38 ............................. CAGGTGACAGCGGTGCTTCCTACTGACACACCGGATAC 2268264 29 100.0 37 ............................. CACAGGGTATTCGCCACGCTTGCTGTCTCCTACAACC 2268198 29 100.0 37 ............................. CCAGGAAAGCGCATAAGATACACAAAAACAATTACAG 2268132 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================== ================== 86 29 100.0 38 GTTTTTAGCCTACCTAAGAGGGATTGAAA # Left flank : ATTCCAAACCATTTTCAATAAAATATAAAAATTAAAACCTGGTGGGTAATTTCCAATTTTTTGACTTTACCTTGGGGTTGTTTTTTACAAAACTTTAGACTATCAGAAATATTTTCCGAAAATAAATTCTTCAAGTTTTCCCAAACTCACTATTATCTGTCTATATAAATCCTATAGTTTTCCATAGTTATCTTTAGGCAATTCTATTTTCTATAAGGTATTTTCCTGGGGCAACTTTGGTTTAAATGATTATTACATTTTGCTATACTTTTGGCAAATAATTTATTGATACCAATTTTATAAAGTACGTCTGATAACAAAATATTTGTCGTCGATCCCTAATAATGCAAAAATCACTGGAGATCGACGACATTTTTATTTTTTGTTTTCATTAAGGTAATTGATTTTATCGAATAATGTGATATAATAAAGGCAAGATACTTGACAAAGCCATTATGAGAGGCAAAATTTTTATTCGCTTTTTATGGTTTTTTGAACGT # Right flank : CCTCAGTCCAAGTACCTTATCCCCGCGCTACCAGGTGTAGAGATCACTACGGCAAACTCCCAAGGGGATGCCCTAGCTTACTGGATGAGTGAAACAGCTGCCACGGTGCCCAATAACCAAACCTATCCAGCGCAAGAGCTCATCAACCGGATAAACGGGCATAACTATCCGTACTCCTATGCGGTCATCGCCCATCCTTACGGAGCTCATCCGTGGAGTGACTGGAATGCAACGGGTTTTTGCGGGATGGAGCTTTTAAGTCAGGAGACCGTTGTCAAACCCGATACTATCTCTCGCTGGTTTACGCTGTTGCGCAGCGGGCTTTCTTCAACGATGTCCAGCGGTAGGTTTATGGTGGGCATCGGGACGTCGGATTGCCACAACTTCCAGGCGCCGGGGTTCGCGGGGTTCACCTGGGCGTACGCGACTTCGTATTCGTCGACAAACAGGGCTGCTATCTGGGATGCGATCAAGTCCGGTAGGGTCAGCGCCTCCGGGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTAAGAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 3 2347140-2344710 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009170.1 Thermoanaerobacter kivui strain LKT-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2347139 30 100.0 36 .............................. CAATACTTAGCTCTGACTGGCAAACTCGAAGATGCA 2347073 30 100.0 36 .............................. AAGCATTAGGATTAAACGTTGTATGGAATGCTCAAA 2347007 30 100.0 37 .............................. GGGATGATTCCATAATCTTTTTTTTCTTTCAGTGTGC 2346940 30 100.0 37 .............................. GATAGAGCTGAAGCTGAGCTGCGAAAACTTGGTAACA 2346873 30 100.0 39 .............................. CAACGCAAACATTCAGCAGTTAAAACATAATGAGAACAA 2346804 30 100.0 37 .............................. AAGGATTGGAATTGGCATCACTCCATAAAGCTGTCCC 2346737 30 100.0 37 .............................. AAGCCAAACTTTTATGATGATGAACAAACTTTAAAGC 2346670 30 100.0 37 .............................. TCGAATTACACGAAAAACTTAAACAATATAGTGTTGA 2346603 30 100.0 38 .............................. AACATCAAAAGGCAATGAAAACGGAAATTTTTGGGTTA 2346535 30 100.0 36 .............................. TGTGTTGATAAGAAATTATTTGTGCCATCTGTTAAA 2346469 30 100.0 37 .............................. AGTGATTGTACTCGACTAAATTTCTGACAAGGGGGTG 2346402 30 100.0 37 .............................. AGTGATTGTACTCGACTAAATTTCTGACAAGGGGGTG 2346335 30 100.0 36 .............................. TAATCGTCTTTTTGCTCACATTATCACCTTCATTAA 2346269 30 100.0 36 .............................. GTATGAATATATACTGAATTGGTTGTGTTTTATATC 2346203 30 100.0 37 .............................. AAAATATTGAAAGGGTGATTTTGTGAGTGTATTTTTG 2346136 30 100.0 37 .............................. AGAAGCAAACTGTTTTTTGATTATGTAAAAGCCTTAG 2346069 30 100.0 36 .............................. TAGTTTGCTAACGAATAAAATTCACATTCGTGTACA 2346003 30 100.0 36 .............................. ACGTAAAAGGCAAGTTAGTTTGCTGTGATATTGACA 2345937 30 100.0 37 .............................. CAATTTATTGGTACATATTAATTAAAGGTGGATATTC 2345870 30 100.0 36 .............................. GAGATAAAAACCTTCAATGAAACAAAGCTGAAAGAA 2345804 30 100.0 37 .............................. TTTTTTATATCCTCAACTAGTTGTTCTCTTGCTTTTG 2345737 30 100.0 37 .............................. TCGTATTATACATACGAGGTAGTAAAGCATAATTTAA 2345670 30 100.0 36 .............................. ATGTTTGTGTGATAAATGACCTTCTGGTATACTCTT 2345604 30 100.0 37 .............................. AAGCTAACCAAAAATTTGGCAAAAACAGCATTCATAA 2345537 30 100.0 37 .............................. CTGCAAAAGCAGCAAGACCATAATCAATTACATCCAC 2345470 30 100.0 37 .............................. ATTGTATTGTAAATTCTGCTTCCGCTGGTGGATTTAT 2345403 30 100.0 36 .............................. ATAAAACAGAAGCGGACCTGGGAATTACTCCTGCCG 2345337 30 100.0 37 .............................. TTCTATTCGTTGCCTATTAATCTGGATGTTTCGGTTG 2345270 30 100.0 36 .............................. ATGTTTGTGTGATAAATGACCTTCTGGTATACTCTT 2345204 30 100.0 37 .............................. AAGCTAACCAAAAATTTGGCAAAAACAGCATTCATAA 2345137 30 100.0 36 .............................. CAATACTATACGCAAGTACAACTGTACTTACATGCT 2345071 30 100.0 39 .............................. AAAGTTATTTTTTTAATATATCAAAAAATCTGTGTAATA 2345002 30 100.0 36 .............................. TCATTAAAATATACAATATCAACAGGATCGCCATAC 2344936 30 96.7 35 .............................T TACGTTGATGAATTCAAGGTCGGGAAGCTAAATCA 2344871 30 96.7 37 .............................C TCAAACAGATCGCTTCAGCATTTGGGATAAAAAATCA 2344804 30 96.7 35 .............................C ATAATACGAACTTCACCACGTTCTACATCTTTCTT 2344739 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ======================================= ================== 37 30 99.6 37 GATTTAATCCAACCATACTGGAATTGAAAG # Left flank : ATTTAAAAAACAATCTCATTGAAAAATATTACGTGATTTACAATACATTGCCAGATAATTTAAGTCTTAATATTAATTTTGACATGGAGTATTATTCGAAAAATCCAAAAGGTAAAAGGATAAGATATAAAAATGTTTATGTAAAAGGGTATATGGTGCCATTTACAATGTCAGGAAATATTGAATTAATCAAAGTGGCATATGATTGCGGTATAGGAGAGAAAAATAGTGCAGGGTTTGGAATGATACAAAAAATAAGATGAATATTTATTAATTTAATTTTTTGTCGACCTCTCCGGATGTAAGAATGCCAAGAGGTCGACGAAGAAAAACCCATATATAACGTTTTCATAATATCACAAAAATATAAATTTTATGTCGAGATGAATTTTTATGAATTTATGTTTGAGTATTTATTTTAGGATTTGTTATTGTAAAATAGCTTATTCTGTGGTAAAGTAAATTTAAAGAGCATTAGTATTATCATGCAGTTTTCATGG # Right flank : TTAGAACAGCAAATCCTCGATGGAAATTTTCCGACAGTTAACTATCCACTAGTATGCTTTTAAAGGAGACCCTTCTTATACCAGGATCTTGAAAGAGGGAAGTACAGAGGTTGTAAATTTAGCCAATAACCATACTTTTGATTATTTAAGAGAGGGTTTTGATGATACGGTAAGGGCATTAAAGAAAGAAGGTATTGGTTATTTTGGATATGGATATAAATACATTAGGACTACAAAAGGAATAAAGATTGGGATACTTGGATATACAGGGTTTGACAATACTGTGTGGACAAAAAATCAAATTAAAAAAGACATTTCAGAGTTAAAGCCTAAAGTTAATCTTTTGATTGTAAGCTTTTACTGGGGAGAGGAAAATCAGTTAGAATAAAACAAAAAGATATTTTTCCAGGAGGTAGTGAGATGAGAAGGAAAAGTGAGTTAATTAATACTTTAGAAAAGTACGGGTTTTTATTTATTGGTGCTTTACTTGTGGCAACCGC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTAATCCAACCATACTGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //