Array 1 63969-63085 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGV01000114.1 Gilliamella apicola strain HK2 Gilliamella_apicola_HK2_contig96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63968 29 100.0 33 ............................. ATTGATTGCGCATCCGTTAGTTATTTCGTGTAC 63906 29 100.0 32 ............................. TTGACATTAATGCATTTTTTACTAGATCTAGA 63845 29 100.0 32 ............................. AATGTTTGATTTTTTTAAATGATGTCTTATGG 63784 29 100.0 32 ............................. TCGTTAATTTAATAGATAAAATTACATTATCT 63723 29 100.0 32 ............................. GCAAAACTCGTTTTAGTAATCCCCACTTGTTA 63662 29 100.0 32 ............................. CTCGGCGAGGAGAAACGGGTAGAGGTGGTCCA 63601 29 100.0 32 ............................. CGATGTTTTATTATCTGCAATAACAATAAAAC 63540 29 100.0 32 ............................. CTGTCACAGACGAAACTGTGACATTAAATGAT 63479 29 100.0 32 ............................. GGGGTTGCGTCCATAATGTTTTTTTGTTCTAA 63418 29 100.0 32 ............................. CCTCCAAACTGAAAGGCTTTACTCTTATGTGG 63357 29 100.0 32 ............................. CGTTTACTCCATTTCTCATCGACCCAAACATT 63296 29 100.0 32 ............................. AAATAATCGATTTTGATTAATTAATAACCTTA 63235 29 100.0 32 ............................. CCCTCAGATTTGGTGCCAGAATCAGAAATCGA 63174 29 100.0 32 ............................. GTCTTTACGAACACAATATTAGGCCTGCCGTA 63113 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.8 32 GTGTTCCCTGTAGGTACAGGGATAAACCG # Left flank : CTTATTGAAGAAGTTTTGTCAGCCGGTGGCATTGAACCACCACCGCCTCCAGACAATGTTCAACCCCCCGCTATTCCCGAACCTCAATCTCTTGCCGATAGCGGTTTTAGGAGTCGCTAATAATGAGTATGTGTGTTGTTGTAACTGAAAATGTTCCAGCTCGATTACGAGGCCGTTTAGCCATTTGGTTACTTGAAATTAGGGCAGGGGTTTATATTGGTGATATATCAAGACCGATAAGAGAAATGATATGGCAACAAATTGTTAAACTCGCAGAAGACGGTAATGTTGTCCTTGCCTGGGCAACTAATACTGAATCAGGATTTGATTTTCAAACCTATGGTACCAATAGAAGAGTTCCGGTAGATCTTGATGGGCTACGCTTAGTATCATTTTTACCTATTAAAAATCAATAAGTTAATGTTCTTTAAAAATTAGAAAAATTTGGTAGAATTTAATAGCAGATATAAGTTTAAATAAAACAAATATCTATATTTAGA # Right flank : ATAGAAATTTTATTGATATTTTTATCAAATTTGATATAATTATTAAAAATAACAAAACAGATTGATTAAATGTTTACGATAAAAACGCATGATGATGCTAAATCTGAAATTCTAGATTTACCCGCAGAATTAAGAGGTCGAACAATTAAATTGATTGAAAAACTAGAACAATTTGGACAAATGCAAATGCCACATAGTAAATCGTTGGGTGGTGGGTTGTTTGAATTGAGAGCGTTAGAGCGTAATAATATAGCTAGAACTATTTATGTTTATCAAAAAGAGCAAACGATTTTTATTTTACATGCGTTTGTTAAAAAAACACAAAAAACACCAGTTGGCGCAATGCAAATAGCGAGAATCCGACTGAAGGAGATGATTGAAAATGAATAAAAAACACAGCACAACATTTAATGAAATCAAAGATATCGCGCTAGCAGATCCTGTAGCGCGTGCGGCATATGATGATGCAGAGGACGAGTGGAAATTACGTGAATTATTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTAGGTACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [88.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 33525-32676 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGV01000095.1 Gilliamella apicola strain HK2 Gilliamella_apicola_HK2_contig79, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================================================================================================== ================== 33524 26 100.0 35 .......................... CCGTGTTACACGATAATCAGCGGAATAAATGACAT 33463 26 100.0 35 .......................... CCGCGTCAGGAGCTAGAGCGGACAGACCTGAATTA 33402 26 100.0 36 .......................... CCGTCTTTAATATTGTGAAAATAGAACGCTACATTT 33340 26 100.0 35 .......................... CCGTATACTTTCGGATATTTTTCTCCTGAACGATT 33279 26 100.0 35 .......................... CCGCGGTGGAAAATGTCACGAGTGGCGCTATTGTC 33218 26 100.0 35 .......................... CCGAAACGGTCAATACAATAGAGGTCTAATAAAAA 33157 26 96.2 35 .............G............ CCGCAATCTCTCACCGCGTTAATCTAGTTGGTTAT 33096 26 96.2 35 .............G............ CCGAAAAAGGAGAAGACAGTGCAAACAGTAAAAAT 33035 26 96.2 35 .............G............ CCGCTGATGCAAAAAATGGCTCAGGGCAACGTCAA 32974 26 100.0 123 .......................... CCAGAAGATGACTAATGACTAAACATTCTAAAACGATTGCAGATTTAGAGTCTGCTATGCTCAATACAGAAAAATCAAAAAAAGCGTTCGAAGCTGCAGAATATGAATGGCGATTAAAAGAGC 32825 26 88.5 35 .......T....C.....A....... CTGGTCAAGAATCAAGTTCATCTTCAGGAGAAGGT 32764 26 80.8 36 ........C..G..A.T.A....... TATATTTAATTTTTAATGTGTTTTTTTACTTGTTGG 32701 26 73.1 0 CATA.....A........A.....T. | ========== ====== ====== ====== ========================== =========================================================================================================================== ================== 13 26 94.7 43 GTGTTCCCTGTATACACAGGGATAAA # Left flank : AAAAACACACGCATTTTAAAGCGCATAGGAACCGAATACCCCTCTAAATCAGCAGGTATTGACGGCGCACCAATGGATTTTAATTACCGTCAGTATTTAACAGAAGATGAAGCGCAGATTGTTGATAATGCTGTTTTAAGGCTCAAAGCGGATAATATTGAATATTGGGCGGTATTAACCTCTTTTTATCTACGTGACATTTCATGCAGTAAGCAAGCAAAAATATTAGGTAAGCAAACAACAGAAATGACAAAAATATTATTAGCAGCAGAATGTTTTATACGGGGGCACATTATTGAATTATTCCCAAAAGTGGCGTAGATAACCATGATTATAAAAAAAGGTATTTTGGATTGTTAATTAAAATTTATTTAAAACAAAATGTTATGTCTGATATAATCTAATTGGTCGTTGAATAAGCGGTTTAGCAAAAGCGCTTAAAAATTGGTAGAAAATTTTAGTTAATTATTTTATTTATAAAACAAATAGTTATAATTAGA # Right flank : CCCGTGCTTTTAGAAGCAATGAGTGAACTTCGCCCCAAAATGGACAAATGCCATGCCAGTTAAATATAAGTATGTCAGGTTATTACCAAACGTGGACCCAAATTAAATGGGCTATTTAGTTATATCAAAACATCTGATTAGCGATATAAAGTACGTTTAGGTGTAGCTTAGTGTACGATATCAGGAACAAAGGCTATGATATAACAGAAAAACGGCAAATCGGGCATGATAAAAGTCATTCAGAAAACCTATTGATTTTATTGAGGTTTTTAAGTGGTGGTGAAAGGTGACATTAATGTTTTTACCACAAAACTACCTTAGTTTAATTCTATGCCTAAAATTATTCATACACTAGAAATGGAGCTACAAATTATAGTAATAAAAAAAGCGTGAAATATACAATAAAACACTTGACTGTTTAAACGTTTAAATATATGATATGCGCATGATGCGGTTTTGAGCGCACAGAATTTAAGTCCACTAAAATAGTTGGGCTTTTT # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.67, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : GTGTTCCCTGTATGCACAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //