Array 1 106994-106846 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZEZ010000016.1 Escherichia fergusonii strain O134:Unknown / ND / 10187 (ST Warwick) / fergusonii isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 106993 28 100.0 32 ............................ GTGCGCTTTAGCGAGGAATCAAAAGCCATTCG 106933 28 100.0 32 ............................ TTCACTGGTAACATACTCCACCCGCCCACCAT 106873 28 82.1 0 ....................A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAGTTCATCGTCGAGTTACAGGTTCAGTTGGATCAGAAAGGGGTTTCCCTGGAAGTGAGTCAGGAAGCGCGTAACTGGCTTGCTGAGAAAGGTTACGACCGGGCGATGGGCGCACGTCCGATGGCACGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGTTCGCTGGTGGATGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGATGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGGGAGGTGGTCCAGACCCTTTTTTGATGATGATAGTAAGTTGTTGATAATTAATGCTGCGGGAAGGTAAGGATAAAAAAGGGTTGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : CGAAAAAAAAGCTCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTCGCTGCCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTACGGACTTATACTTGCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACGCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGT # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 57896-55242 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZEZ010000018.1 Escherichia fergusonii strain O134:Unknown / ND / 10187 (ST Warwick) / fergusonii isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 57895 29 100.0 32 ............................. TATCTTCATTCGTCACCGTCGAGCGGATGAAG 57834 29 100.0 32 ............................. CGGTGAATATCAAAGCGTTCCCGCGCTCGCGG 57773 29 100.0 32 ............................. TACCCCACCCTCTCGTTTGATTTTACGTTCCA 57712 29 100.0 32 ............................. CACAAGATCGGGATTGCGATCCGTGGGATTGC 57651 29 100.0 32 ............................. TGGTGAATGTAGAATAACCTAAGGATTGAATC 57590 29 96.6 33 ............................T GTGTTTTTTGAGTAGCTTTATCGAGGTAATGGA 57528 29 100.0 32 ............................. TCATGATCTCCGACTCTGTAATCGTAGACGTT 57467 29 100.0 32 ............................. GGCTTGGTATAGAAAATGACAAAATTAAAATT 57406 29 100.0 32 ............................. ACGTGGCGCGGGATCATTTCGTGGGATAAAAC 57345 29 100.0 32 ............................. AATTCGACGAGTTTTAATTTATGGCGAGCTAT 57284 29 100.0 32 ............................. GCGACAGCTATAACCGAAAGTGAAACGCAATT 57223 29 100.0 32 ............................. ATGCTCTGGTTAATGAGGATGGCGAGAAATTA 57162 29 100.0 32 ............................. CCCCGCATGTCTAATGCGGAGCTTTTTAAAGT 57101 29 100.0 32 ............................. GCTTCGGCCAGTTTATTCTCGGCCACATCGAG 57040 29 100.0 32 ............................. CTATATAAAGCAGAAAAAACGCAACTAGAAAA 56979 29 100.0 32 ............................. CCTGTAATGAAGGGGCTGGCGTTCACGATGTA 56918 29 100.0 32 ............................. AATGCCGACGGCTCGATCATGTCGTCGTTTAT 56857 29 100.0 32 ............................. CAACATAGCCGGATAATAGGCGTCGTGATCAC 56796 29 100.0 32 ............................. GCACAATACCACTCCTCTAGTCTCGCAGTCAG 56735 29 100.0 32 ............................. TTAATCACCCCGCTTTAAGTTTACTTCCACGG 56674 29 100.0 32 ............................. AACAAACCGGACTTGCAACCAGATTGTAATTT 56613 29 100.0 32 ............................. AATGTTGATAGGGTTAGAAATACAGTGGTGTA 56552 29 100.0 32 ............................. TTGGAGTAAGCAGCCAGCGCAGCTCTCAGTAT 56491 29 100.0 32 ............................. ATCAACTCGCTAACGTATATCGTGGAGGACAA 56430 29 100.0 32 ............................. GTTAGGCGAGGACCGAATAGAGGATTTCGGCG 56369 29 100.0 32 ............................. AGCCAACTCGATCTCTACGTTCTACCGAACGG 56308 29 100.0 32 ............................. TGGGGCTGATCATGGCTAAACAACCGAGGCGC 56247 29 100.0 32 ............................. TTACAGCGCATTGCGAAACGCTGCGGCGATGT 56186 29 100.0 32 ............................. AAATCCGGTTCAACCAGCTCCACAACGGCACC 56125 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 56064 29 100.0 32 ............................. CCACTGAATATCAATCAATAGCTATTGGTGCG 56003 29 100.0 32 ............................. AGTTATGCAAAACATATTTGCATTAACAATTA 55942 29 100.0 32 ............................. GCCATCATGCGACTATAAACAAACATCTTCAG 55881 29 96.6 32 .........................C... TCCGAAATAAGGATTATTTTTTCGCGATTTCA 55820 29 100.0 32 ............................. CGCCCGTAACGGTCCTTCTGTGTATATGTCAC 55759 29 100.0 33 ............................. CAAAGCTGGAGCTCCACTAATAGCTGATCAGTA 55697 29 100.0 32 ............................. TGGGTACGCGATTTAACAGCACTGGCGGCGTT 55636 29 100.0 32 ............................. TCCGCTCAATATGAAAAAACGCTGGCTACAAC 55575 29 100.0 32 ............................. TTTCAGAAAAGTACGGCTCAATTGATCGCCCC 55514 29 100.0 32 ............................. GATTTTGATATTTATCAGATCCCGGCGGGCGT 55453 29 100.0 32 ............................. AACAGGCGCTCGTTGACGTATACAGAGCATTA 55392 29 100.0 32 ............................. CCTGGCCGCCGAGGTTATGAGCGCGCGGCAGA 55331 29 100.0 32 ............................. GTAATGCACTCACCACGGTTACAACAGATATT C [55322] 55269 28 82.8 0 ............T.........-.CT..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCCGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCAGCTATCCCGGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCAGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCGATCTGGCTACTGGAAGTGCGTGCTGGTGTTTATGTTGGTGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTCATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGGTTGGTTTCGTTTCTTCCTGTTGAGAATCAATAAGTTACCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAAATTGTTTAAAAACAGATACGTATGCTTAGT # Right flank : AGCTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACAGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACATCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 73185-72851 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZEZ010000018.1 Escherichia fergusonii strain O134:Unknown / ND / 10187 (ST Warwick) / fergusonii isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 73184 29 100.0 32 ............................. AATTCGACGAGTTTTAATTTATGGCGAGCTAT 73123 29 100.0 32 ............................. TCTGCGCAGGTTCTGAAATTCAATTAAAAGCT 73062 29 96.6 32 ...........................T. ACGACGACGGCACACGAGCGGTTAATCCCGAC 73001 29 96.6 32 .........A................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 72940 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 72879 29 75.9 0 ........A..T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 93.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAGTTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAGCTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATTA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //