Array 1 75801-75406 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINAZ010000005.1 Escherichia ruysiae strain C10-7 c_000000000005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 75800 29 100.0 32 ............................. CAGGCATCATATGCGGCTTTCTGCTGATAGTA 75739 29 100.0 32 ............................. ATGAATTACGCATTATTTCTTATATCGGCATT 75678 29 100.0 32 ............................. CGAAAAGGAAGAAAGTCAGTTAATGGCCTTGT 75617 29 100.0 32 ............................. GCAGCCCGAACAGCGGCGCATATGACACAGAC 75556 29 100.0 32 ............................. GATCAACCGGGGATTCCTGGTCTTCGAGGGGC 75495 29 100.0 32 ............................. TGAAAATCCTTCCTCTTGTTAATCGATATATT 75434 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : TGGATGAATTGTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCCCTTCAGCCGATTAGTCAGAAAGAAGATGCCACGCGTTTATGTATCGATACCTGCATTGCGCGGAACTGGCGTTTGTCGATGCAAACGCATAAATATTTGAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAAGAATTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTGCCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTGAAGTTTGGCAGATTTTAATTTTTATAGATTTATTTTAAATATTTACCTTTTCAGTCAATGGATTAAGTGCTCTTTAACATAGTAGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TATCACCCGTCCTCTATTTCCCATATTATTTTTCGTTCCCTGTATCAGCAATAAATAACATATCTAGGTAGTTCAAAATAACTCTCTACCCCCGAGGATTTCACACTTATCAACACAAAAAACTCAATTTTAATTAAAGTGGCATTTGTATAATTACTTAAACCATTAAAACCATCTACTATCTTGTTTCATTTTCAGCAATATATCTGGCTGTTAATTAGTTTTTCAGAATAAAAGTAAAGAAGAGTTTGATTTTTGAACTTATTGTTCATTGATTAAGTAATGAATCAGTATAATTTGCGGTTGTTTTTTGAGGTTAATTAGTGATTTTGCATAACCCATTTTATGCACTATTGATGAATAGTTCTTATGGATAAAGATATCCAGTTCATACTTTAAGTGAGAATTGATAAAGTACGATTCGCGTTGTTCTTTATTCTAAGGGTATCGATTGCAGTTAATATTCCTTGTAAAAACAGGGATAAACCGGACTTGTTCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 150270-151137 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINAZ010000074.1 Escherichia ruysiae strain C10-7 c_000000000074, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 150270 28 100.0 32 ............................ CTGAAGCCGGTGATCTCCATGTGGCTGTCCAT 150330 28 100.0 32 ............................ TGAACAGATTATTCCTACTCAGATGGAGTACC 150390 28 100.0 32 ............................ TGACTTCCGGTAGCGTGTACTACGCGTATAGC 150450 28 100.0 32 ............................ TTTAATCTCCAGCGAACGGAAAAAACGCTGAT 150510 28 100.0 32 ............................ TTATGAAGCAATAATGGGGCTGGTAGAACGCT 150570 28 100.0 32 ............................ GAGAATGCATCTCTTTGGGATACAAGGAACGT 150630 28 100.0 32 ............................ AACCCCCCAGCCGACAATCTCCGCCTCCAGTC 150690 28 100.0 32 ............................ TTTGTATTAGCGGTAGCCTCCCGAACTATAAG 150750 28 100.0 32 ............................ TACGCAGCGTTAAAAATTATGCAGCCGTCATT 150810 28 100.0 32 ............................ ACTGACAGAAGATTTAGGCTCGTCGCCAAGCT 150870 27 96.4 32 ..........-................. GGTATGACCCACATTATGAGCCATGCTCGCAC 150929 28 100.0 32 ............................ ACTGTACAGAGAGAAACTAAATTACGTATTCA 150989 28 100.0 32 ............................ ACGATAGCCGCAGCGGCTGTGACTGATAACCC 151049 28 100.0 32 ............................ AGACGCTCTCTGGTGGTGAGAAGCGGAAGGTT 151109 28 89.3 0 ....................T...C..T | C [151132] ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTGCAGGTTCAGCTGGATCAAAAAGGAGTTTCTCTGGAAGTGAGTCAGGAAGCACGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGTGCACGTCCGATGGCTCGCGTCATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGACGGCGGCCAGGTCACCGTTGCACTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATGGTGTAAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTGTTTGTGAGGTGAGGGCGGTTGTAACCCTAATTTTTATGGTTACTGTAACTTATTGATAATTAACGCTGCTGGAAGGCAAGGATAAAAAAGGGTGGCAGCAGGGAAATTGGATAGTTTTACTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGTAATGGTAGACGTTTGGTCATATCATGATGCTCTCAACGTCAAAACATTAGCCTTAGCACACAATAACAATTGTAATAATTGCGACAGAAATCAATTTCCTGCACAGAAATCAATGTTGTACTAATCCTAACGCCTTAAAACAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGACCTCAAAACTATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCGGGGGTGATGGTAGGATTTTGTGGTACGGATGGCACACCGCTTTACTCCGCCAATGAAGTAGATGTTGATGTCTCCTGGCTCAGCCCACAAAGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 160006-160632 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINAZ010000074.1 Escherichia ruysiae strain C10-7 c_000000000074, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 160006 28 100.0 32 ............................ TCCCTCCATCGATAAAATCCTGAATCCGCTGG 160066 28 100.0 32 ............................ TTTCCGTCTCCAGCAGACGCGCAGTGCTGCCG 160126 28 100.0 32 ............................ TCGCTAAAGCGGGGATTCAGACGCCTGACGTC 160186 28 100.0 32 ............................ GGTAACGGCGCGCTGCCTCGAACAGCAGGCAT 160246 28 100.0 32 ............................ AGAACGACGGCACAACGTACCCAATCGCCTAC 160306 28 100.0 32 ............................ CTTCTGCCGTTGCAGCGTTTCCGGTTGCGTCG 160366 28 100.0 32 ............................ AATAGCTTCCGCTTCTTGCCACGGTTTACCGT 160426 28 100.0 32 ............................ GCAAGTAAAGCTCATCGGTATCTGATGGACTG 160486 28 100.0 32 ............................ TGGATAGCTTCCGCTTTTCGGATTGCCACCAC 160546 28 100.0 32 ............................ GCCGAAGCCCGGCGTAGCCGGTACGGATCATC 160606 27 85.7 0 .......A...C........-...T... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGCTGGGAGGTATACGAAGCCATCTATATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGTTGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATTTAGATTGGTTTGTTTGGTTATGCATTGTTCATGCGGTTCATCCGTCCAGGATTGTGAATGTATATGCTCTGGGCAATTATTTATCAAAAGCTACGCTGGAAATATGAGATTGAAGACATTCTAATCGACCCTTTTTTCAGGGTGAGATGTAACGCATTGATTTTATTTATTACTATTTTGATGCTTCGAAAAAGGGTATGAATTGGAGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTTTGTTATTATTCCA # Right flank : AATCCATAACCCAATATTTATTTTCTTCCTTAACTCCAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGCAACGTTTCAAGAACGGTGCCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAGATAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //