Array 1 1069149-1068659 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027303.2 Geobacillus thermoleovorans strain SGAir0734 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1069148 30 100.0 37 .............................. TCAACGGGATAAAAAGGAACTGTCGATCGGCCATATT 1069081 30 100.0 36 .............................. ATTGTGAAGGAATTGGGGTACGAATGGGACCGGAAC 1069015 30 100.0 36 .............................. GATTTCACCGACACTAGCCGGTAGGCGTTGATGAAA 1068949 30 100.0 35 .............................. CACCTTACATCCGGTCAGGCACTCGCCTATTTTTA 1068884 30 100.0 35 .............................. GCCGACTGTGCCGCCGCATTTGCTTCGTTTGCCGC 1068819 30 100.0 37 .............................. CCGTTTGACCTTTATAATATTTTGGCTGTTATCAATG 1068752 30 96.7 35 ................C............. CGGAGTCGGCCGCTTTCTCCACGCGTTTCCGCCCA 1068687 29 73.3 0 ......G...CG.....A..A.GC-..... | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 96.2 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTATGAAACGATCGATGGCAAAAAGAAAACGCATTTTTTCGGGCCGGACGACGACGTCTTTCCCCACCTCGTGGAGCTGAATTTCCGCCATAAATACGAAGCGTACTATGGCGTCGAGCCAGCAGAGAGATTGGTGATCCAGCCTGTCCATGTCCACCACCGTCATCGAGTGGTAACACGATTCAAAGATATGTATATTACGGGCTGGTTAGGCCATTATCGTCTTTCCTCTTCTCCCGAACAACTGACGTTTCTATACCACGTTGGCCTAGGCAGCCGCAATTCCCAAGGATTCGGCATGTTTCGGTTAATCAGCGAGTGAGCCATTCTGATTGTCGTCGACCTCCAATCGTGCAAAAACCCTAGGGGGTCGACGACATTGGTTTTGATCGCCTGATCCCTACAGCCATCATGGTTGAACTTGATTGACAGAATCTTCGAAACGTGTTATTCTGATGATGACGTTGAAGGGAAAAGGTTGATATGACAACACTTTTTGG # Right flank : CCTCTTCAATGTCACGCCATCGTATGAACGTCTTCCGTTTGAAGAAACCGGATGGCTGCACTTCCCCGATCGACCGCTTCGTTTTGCTTCGGCTGCTCATTCTTGCGCCGCTTGCTTTGCAGGAAGCCGCTTTTTTGTTTCGCACATGGAGAACGTTTTGGCATCTGCTTTTTTTGTATGGCCCCATTGATCCACCAGGCATGGTTGTTCACCGCCTTTCTTTGCCGCTGCTGCATTTCCTCAGTCCGATGCGATATACTTGACATGGGAACAATCACGCTTCTTTCTCGTTCACCGTCGTGTCGGCGGACATGCTGCGTTGGCGTTGGACGGTTTGAAAGAAGGCGGAGAAAAGCGACAGGGGTGGGATGGATGCGCCGCAAACTTCGCGATCTTGGTTTTTCCATCGGCACGCTTCCGACAGGGGAGCGCAATCAAGTCACCGATGTGCCTGGGGTGCGGGTCGGTCATGTGACGATTCGGGAAGATATGAATGAGCG # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1071906-1071613 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027303.2 Geobacillus thermoleovorans strain SGAir0734 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1071905 30 100.0 35 .............................. TCCGAACGGCTTTAATGAGGAAGATAGCAAGAATA 1071840 30 100.0 34 .............................. GGCGTCTGCCTCTCCCAACAACTCCGCGATCGCA 1071776 30 100.0 38 .............................. TGATCCAGCCGGTTATAAACGTGAAAATGGTGAGCTGA 1071708 30 100.0 36 .............................. TATTCATGCCCCCGCTCGCTTTCCGGGATTCCCACG 1071642 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 100.0 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : CCACCCCATCGGTTCACTTGCCTGCGGAGTGGCTCGCCAAACTCGCCTCCGTAGCGTCAGCGCCGCTGCAGCCAGTGAAAGAAGCGATGGCGAAAACGGAAAAAGCGGGATACCAAGAGGCGATCATCGGCCGACTGCTTCGAGACATAAAAAGTTAGCACTCGCCCTTGTTCATGCAAGTGTTGGGATTCCAATGTTTGTATTCGTCTTGCCTGCGATGGATGGGCAGGCGGCGCCCCGGTTTTATTCACCGCATGACGAGCGCTTGCCCTCGCTTAGGCAAACAGCAATCGGCAAACAAGGCACGCCAAACGCTAGGAAGCAGTCTTCGTTTGTCGTCGACCTCCAATGACGCAAAAACCCCAGGGGGTCGACGACATTGGTTTTGATCGCCTGATCCCTACAGCCATCAAGGGTAGACTTGATTGACAGAATCTTCGAAACGTGTTATGCTGAAGTTGCCGTTGCAGGAGAAAGCTTGTTATGGCAGCGCTTTTTGG # Right flank : TTCGGCAGATGATCAAAGAAGGCCTGGAATCCGGGATTAGATTCGGCACAGCGAACCGGGAAATCTGCTTGTGTCTACTAGTTGCAATGAATGAACTGGGGGTGAAGAAACCATGATCACGATCTATGACTTGATCGGCTACATTCAAAACATGGACAACATGGACAAATTGGATGAAATCATCAGTCGATGGTACTTTCAAACGTCTGTCTGGACATCACAGGTGAAAGAAGAAGTCAAAAAAGCGGTGGTCGAAATCCTACAACTAGGCGAACCTAAAGTGTACCAGTTTTTTGTGGATATGTACGGTCTTAAAATGTGAAGTTTTTATCGTACCTATAAAGGGATTGAAACGTCATCCCGGTCGTGACAATTGGAGTTCCTTCTGCCGTTTTTATCGTACCTATGACGAATTTCTCACTGTGAGCAGGATGCCGCCTTGGGGACGGCGAATAGAAAAAGAGAGACCATCAAGGTGAGGTGATTGAATGGCGATTGAC # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1075937-1076105 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027303.2 Geobacillus thermoleovorans strain SGAir0734 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1075937 36 100.0 30 .................................... TGTGCAGAACCTGTTGACAGAACAGACGAG 1076003 36 100.0 30 .................................... ATCGCATTTGAAGTTTCATCACAAAAAATA 1076069 36 69.4 0 ...................TGT.AATT.T..T.T.T | A [1076099] ========== ====== ====== ====== ==================================== ============================== ================== 3 36 89.8 30 ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Left flank : CCGAGAGCGTGATGAGCCGGTTTGCGCATCGGGTGAAATCCCGCCGCAGCTGGAAAGACCAAGGGCTTCGGGCGTTTCTGAGGGCGATGGCAGCCCGAATCGACGGGATTTGGCGGAGAAATGGGCAGTTGGTGGAGGAAGAAGAGACCCGAACGGCAGCCTCGGCCTCGACGAAGTCCAAGCGGATCGAACAGGCCAAACGGAAGGCAGGACGGTTGTGGGCAGATGTGGTGCGTCAGAATCTACCGTGTCTGCAGCGGTCATCCGGGACGCCGATCCATCAAGCGTTGTCGGCGCTTCGGGATTTTGGTTGGGTGTAAAAAAATGGAATACAATATCATCACTTCAAGATGAGGGATGAGAGTCCGAAAGCGCTTACGATATCAATTCCTGAAAATGGTTCGCTAACTAGTGATTGACAACACCCGTAGTGAACCGAAAAAATGTTCTCCACAAAGTCTTGACTGACTCCAATGCCCTTAAATCCTGCCGCGCTGGAT # Right flank : TTTCAGCACAAAACACCCATTTTTTTGCACATTCTTTCAGAAAGCCCTCTCCCCTTTTCTGAAGGAATGTGCTAATTTTTTTGTGAATTGTTTCGGACGAAGATTTCCATTCGTTTCAAGGAGAGGGGGAAGGAAGTGTGATCCAGTTTCACGACTTTGGCATTGACATTCAAACGTATACGGATCGTGGGAAAGGGAACGATTTTCCTGACGTGAGACAATGCCCCCACTGTCCGTCCCGCCGCCCCTTGCATCGTCATGGATACTACCAACGCTATGCGTTGACGGCAGAGGGGGAGTATCGCCTTTGGATCGCACGATATCGCTGTCAAGAATGCCGTAAAACCGTGAGTGTGCTGCCTTCTTTCCTCCTCCCGTATGTTCAATATACACGGCCGGTCATCTGGCAAGCGGTCAAAGCATGGTTCGAAACGCCAAGGCAAGGAGCGAAGACCAAACAGGTTGGTTTTCCCACCAAGGAGGTCATCTTGTTTTATGTC # Questionable array : NO Score: 4.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 1086821-1087053 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027303.2 Geobacillus thermoleovorans strain SGAir0734 chromosome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1086821 36 100.0 29 .................................... ATACGCTTCTTCGATTTGTTCCCATGTGA 1086886 36 100.0 30 .................................... CGATGAAAAACCGAATCGCCAGCGTGTGGG 1086952 36 100.0 30 .................................... GACACCACCGTCTGTCGTTACATCCGGAAT 1087018 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Left flank : GATGGGGCCGCTGGAGAAGGAAGAGGTGGCGGGCTACATCGAACATCGGATGAAACAGGCCGGGGCGAAGCATCCGATCTTCACCCCATCGGCGTTAGAGGCGATTGCCCTGCAGTCGCGGGGATGGCCTCGGGTGATCAACACGTTGGCCACGACGTGCCTGTTATACGGGTATCAGCTGAAAAAGGACGCCATTGACGAAGAAATGGTGCGCATGGCCGCAGAGGAAATGGGGTATTAGCACGAAAGGGGCCGAATCGGCCTCTTTTGTGCTTTCTCTTTTCCATCGGTCCATCAGGCGCGCTGGAAATCTTCATCTGAAAGAGCGTGCAAACGTTCCGAAAGAATGTGCAAAATCCGGAACAATCCGCAAAAATTTTGCACATTATTTCAGAATCCATCTGAAATAATTTGAAAAAGTGATTCTGAAATAATGTGCTAATTTACAATAATCTCAGGGGAACTATGACGCGAGGAAACGTACACAACAACGGGAGGCA # Right flank : CATTAAAGCAATGACATACTACCGATAAGCTATAGGAAGAACAGGTGTCTTCATTCCTCATAGGCACGATAAAAACACAAAACGACCCCGAAGTAGGAATGGGGCATCGTTTCAATCCCTCATAAGGTATGGTAAAAATCCAAAAAGCGTTGCCATATCAAGCTTTCCCCCGCAACCGCAACTTCAGCATAACGCGTCCCGAATATTCTGTCAACCAAGCCCATCCATGATGGCTTTAGAGATTAAGCGATCAAAACCAATGTCGTCGATCCCCGGGGATTTTTGCACGATTGGGGGTCGACGACAATGTGAGGCTCGACGGCGAAGAGTCTGCTCTGCTTACCCCTTCACCCGTTCGATCTTCTCAACCGGCAGCCCGGTCAGTTCGTGGATCGTGTCGACATCATACCCTTTCGCCAGCATTCTCTTCACCACGTCGAGCTTCCCTTCCTCAATCCCTTGTTGGCGCCCTTGTTTAATACCTTGTTTGATCCCTTGTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 5 1701787-1702285 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027303.2 Geobacillus thermoleovorans strain SGAir0734 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1701787 30 100.0 35 .............................. TCGACGGGTCACATATAAAGAAGAGCCAAGTTTCC 1701852 30 100.0 39 .............................. GTAGGTGGAGGATGAGAGGATGCAGACTCCGGCTGTCCA 1701921 30 100.0 35 .............................. TCAACCCCACAGTCTGTCTAAAAAGTCATCGGTCG 1701986 30 100.0 35 .............................. TATTCTCTCGCTGTCTTGGCGATTGGCTGGCTTCC 1702051 30 100.0 39 .............................. GCTACATTTGAAAGCTCTTGAGTAATTTTCAACTTGTTT 1702120 30 100.0 39 .............................. GCTGCATTTGAAAGCTCTTGAGTAATTTTCAACTTGTTT 1702189 30 100.0 37 .............................. TATCCGCTCATTGATGACCCACATTCCGGACATTTGA 1702256 30 93.3 0 ...............G....A......... | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 99.2 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AAATCACCCAGATTGTGATGGGGATGTCTGCTCGGACGAGATGGGAGGAAATATGGAAAGGATCGCTCATTAATGTAATTATGCAGCAACTTAAACATGTTGATGTGCTTGTTGTATCTGACAGATAGAGAAGAGGGGCATCTTTGATCATAGTTCCAAAAGAAGACTCCCGTTCGCAATTCAAGCAATAAGCGGAAGATGAATGTCGGCTGGCGCCAGCCAAAACGTATGATAAAATCAATGTGCATTGCGTACAGGCTGTTGACGGACTTAAGCGGCTAAGCAGCGCACGAGACGAGAGGAAATTCAAAGTGCACGCTGTGCATAGCATTGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAATCTTTTTACACACTTCAAGCCTACAGCCATCGTACATGAACACGATTGACAGAATTTTTGGATTATGGTATTCTGAAAATAACTTTGGAGCAAAAAGATTGATATATCAAGTGCTTTCTGGG # Right flank : CCTTCGTGTTTTGTGCGAACGATCGTCGCAATAAACGCTTTTCATCACACCGTAAGCAACTCCATGGAGCGCACATAGGTTTAAATCTGTGCGGTGGAGAGAGGTTAAGAGTTGGCGAAGATGACTGAAAGAGATGAATCAGCATTCGCGGGCTATGTCTGTGCGATACCGGCGATCCGCTTCTGCCGTTTGTTTTAGGCAGGAGTTTTTTATTGTTATACAGCCGCTTTATGTCCATCCCGAATTGTCGTTCCAGGAAGAGAAAACGGCGCAATTTGTGTACGAGACGCTGCAATCATTCGGCCATCTTGAGTTGTCGCGGCCGACGAAAACGAGCGTCATGGCGCGGCTCATTGGCCAACAGCCAGGCCGGGTCGTCGCCATTCGCGCTGATATGGACGCATTGCCGATTCAAGAGGAAAACACGTTTGAGTTTGCCTCAAAAAACCCAGGCGTGATGCATGCGTGCGGACATGACGGCCATACGGCGATGCTTCTCG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //