Array 1 124633-124007 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIBW01000005.1 Gordonibacter urolithinfaciens strain DSM 27213 DSM27213T_contig_005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 124632 31 100.0 35 ............................... GCACCACGTCGCAGGCGAACGATCCGTCGCGTGAA 124566 31 100.0 34 ............................... CGCTGAACTGCGCCAGATCGAGCGTGCATTAAAG 124501 31 100.0 36 ............................... TACAACGTGACGGCGGAGCGCCCGAGCGACGAGAAC 124434 31 100.0 34 ............................... GCTACGAAGCAGCAAGCGAGGGCCTTAAAGACCT 124369 31 100.0 33 ............................... AAGGATCGGCCCAGAAAATAGCGGAGTGCATCA 124305 31 100.0 37 ............................... CAGGGTGATGAGCTGCGTGACGCCCTGGTTCAGGCTC 124237 31 100.0 36 ............................... TGGAAACAATCTAATCAAGGTTGGGAGGAGAAAATG 124170 31 100.0 36 ............................... GTCGATTCGGACGGTGAGGCCGTTGAGGGCACCATG 124103 30 77.4 35 ......T....A-....G.AT..A....... GAGACATCTTATATTTGCGTGGAGCTGGACGAGAA 124038 31 77.4 0 ....C.....TATT........C...A.... | C [124029] ========== ====== ====== ====== =============================== ===================================== ================== 10 31 95.5 35 GTCGAGCCCTCGCGGGCTCGCGGGTTGAAAC # Left flank : GTTCATTTGGAGGTAGCGATGTACGTGCTGGTGACATACGATGTGGAAACGGCGAGCCCGCAGGGAACCTGCCGGTTGCGTCGGGTTGCGAAGATCTGCGTGAAGTACGGCCAGCGCGTGCAGAACTCGGTGTTCGAGTGCTCGCTCGATCCGGCGCAGTTCGAGACAATGAAGAGCGAGCTGATGAAGGCGGCCGACCTGACGCGTGACAGCCTACGGTTCTACAATCTCGGGAAGAACTGGAAGCGGAAAGTCGAGCATGTGGGGGCGAAGGAGGCTTACGACCCGGAAGGGTTCCTGTGCGTGTGAGAGGAAATGCGCACCTTGACAATGTAGAAGCTCTATTGCGTGCTGCGCGAACCCCAAGCGATGGCGCGCCATTCGGGAGGTTCGCGCAGGTTTTAGGCTTCACAAGCCCGCTGATAGCTGTTCATGGGGCAGACTGATTGTCTAATATGAATATAATAATCAGAATATGCGTATATATGCATATTCTGACA # Right flank : GAGCACTCCCGCAGCGATTTCTTGCAGAGCTGGTTGATCATGGCGGGCTCCTAAGTGAAAACGGCGCCGCATGCGTCGATGGACTGGACGGGTTATTTCCCTCCTAAAACGATGCGGCTGTCGAGGCGCGCCCGCCCGACTCCGCGCACATGCTATGCCGCACCCCTCGACGGGCGGTAGCGGTGAGCGGCGAGCCGGCTGGTGCGGTCCCGGCTACCTGCAAGGAGGCTCGACGAAGGTTGGAGCTTGCGGCGATCTCCAAGCAGTTGGTCTATAATTCTCGTTCGTAGAAAAACGGGAGAAGGGGATCCATGGCGTCGGAGAAGCAGCAGGCAGGGCGCGCCTTAAGGCGGTTGGCGCGGAAGAACCCGCTTGCCGCCCTCGCCATTGCGGCCGTGCTCGTGATCGGTGCCGCGCTTGGATGGTTCGGCGCTGCGGGCGGCGGGGTCGCGGAGGATGCCGCGCCGGGCCGAGACGGCCAAGCAACTATCGCCCCCGTA # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGCCCTCGCGGGCTCGCGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.50,-8.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 2 134604-134096 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIBW01000005.1 Gordonibacter urolithinfaciens strain DSM 27213 DSM27213T_contig_005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 134603 33 100.0 35 ................................. TCTCGCGGGTGTGGAATCAGGTTGCAGAAGAGACC 134535 33 100.0 36 ................................. CACACTTCCGTGTACGGCACGACGCGCTCCATCAGC 134466 33 100.0 34 ................................. GGGTACTCGGCGATGACCCTCTCGTGCGTTCGCT 134399 33 100.0 35 ................................. TCCAAGAGGCGCGGCCTCCAACGGGAGGGGAGCGG 134331 33 100.0 33 ................................. TCGAGCACGCCCAAACGAGCGATTGAAGCCATA 134265 33 100.0 35 ................................. AAGGTCTCAAAAAGGCTCACACGAGCTCTTCTAAC 134197 33 100.0 37 ................................. TGCCCTTAGTCCAGCAGCTCGGGTCGCTCATGCAGGG 134127 32 84.8 0 ..........ATA-..................T | ========== ====== ====== ====== ================================= ===================================== ================== 8 33 98.1 35 GTCGCGCCCCTCGCGGGGCGCGTGGGTTGAAAC # Left flank : GATTGGCGGCCGTGCCCGGCCGTCGCAGCCCGATCCCGCTCCTTTCCGCAAACGAGGCCCGCCTTCATGTTGACCGCCCGCCTGCCGCCGCCTGCGAGCGCAAACCTTCGGAAACGCCGTGGAAGTGCAACTAGGAAGTGATGTTGAGTGCAGTATGGCCGGCGCGGCGCGGTGGCGCCATGTCCAAAAGGGCGCAGGGGGATAGGATTGGGAATTCCGTGCTGATAGGGTAAGCGGTGGGCAGGAGAGGCTTCCTTTTGGGTGATGCGAACTCGTACGTTCTTGCTTGTTCTATAATGAGCTTGAGTGAATTCGAGGTTGACGATGAGTCTGGGTGCCCTCGATCCGCTAGTGCGCGAACCCTAAGCTATGGGGATTCACACGTGAGGTTCGCGCATGAATCGAGTCATTTCGGGTCGATGGTTGCTAGGAGGGTTCTGAGGCAGCTTGAAAATTGCATATTTCATTCAATTTTATTCAGAATTATGCATGAATTGACA # Right flank : GCCGCCGCGCTAGCTTCCGATAAAACGAGTGATAGGCCTCGGCCTCTGCGAAGCTACCTGATTTGTCACTGCTGCAGTTGCGAAAGGGGTGTGAATTGGGTGCGCACCGTCGCCGTATCGTGCTCTTAGCACCGGTTTCGACAGACATTTGCGCCCCCATGCTACAATGCGCTCATGATGCGCGAGAGCGACATATACGAGCTGCGGCTGTTCGATCGGATCCTGATCGTCTTTCGCATGTCGCGCGGCGAGTACGGCGATCTTTCAGTTGAGGTTGTCTCGGCAGACTCGTCGGCAAGCCGCCTTCTCCCGCTGTCGTTCGATGGAGAGACTACCGACGAGCGTCTCTTCGAATGGATTCGCCGACGGCGCATCCCGAAGAATCGCGCCTATGTTGACGAGATACTCAAGTCGTGCGGCATCGAGTCCGACGATGCGAAATCGATCATCGATGTGAGTAAGGGCCTTTCGCTCAACGATTCCTATTGGGTTGTTCCTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCTCGCGGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.10,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 140275-139243 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIBW01000005.1 Gordonibacter urolithinfaciens strain DSM 27213 DSM27213T_contig_005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 140274 32 100.0 36 ................................ ATCGACGAATGCACGGCCGACGCCAAGAAGGCCGTG 140206 32 100.0 33 ................................ ACGGCTGTTCCGTCTGCTATGAGCAGCGTTGGA 140141 32 100.0 34 ................................ CGGCCACGACCTTGCCGGTGGCGTCTACGACGGT 140075 32 100.0 37 ................................ AAGATGCCTCCAGAAATCATCAGGAGCGGAGGAACCG 140006 32 100.0 35 ................................ ATCATGCCGTCCCACGTGTACCCCATGTCTACGCA 139939 32 100.0 33 ................................ CTGCTCGAATACCTATTGGCCCACATCCCCGTC 139874 32 100.0 37 ................................ CTGGAAGCCGGACACCTCGCCACGGCGGAACCCCGTG 139805 32 100.0 35 ................................ TCGCAGCAGGGCGGGGGAGTGAGGTGCATGCGCTC 139738 32 100.0 35 ................................ GGCGTAGTCTGCGAAGCCTTGGCGTGACCGTAGAG 139671 32 100.0 34 ................................ GAGTTTGGACGCATTGACGCTCCCGTTGGCGAGC 139605 32 96.9 34 .......................A........ GACTGGGAATCGGACGCGCCGCGCATACAGGCGT 139539 32 93.8 34 ...................T...A........ GCGCTGGCTGGCGAGCCGGCGTGGGTCCTCTGCG 139473 32 100.0 33 ................................ CAACGACTACCACGGCCCGTACGTAACCGACAC 139408 32 100.0 36 ................................ TGCGAGCCGCCCAAGGCCCCGGGGCAGCTGGTCGCC 139340 32 100.0 34 ................................ CGCTGAAGGTCGCCTCGGGAAGCGGTTCGTCGTT 139274 32 90.6 0 ...........C.........C........T. | ========== ====== ====== ====== ================================ ===================================== ================== 16 32 98.8 35 GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAC # Left flank : GGTCCCTGCATCGGCTCGGTCGGGCTCATCCCTGACCCGCAGCGGCGCAACGTCGATGCCCTCATGTTGGGGTACTCCCTGGCGAAGCCCGCCTGGGGCCGGGGCTACATGACGGAGGCGTCGCGCGAGGTTATCCGCTACGGTTTCGAGGAGCTGGCCCTCGGCCTGATCTCCTGCACGCATTACCTGTTCAACGATCGCTCTCGACGCGTTATCGAGAAGTGCGGCTTCGAACGCGAGGGCATCATCCACGCCGCCGAGCCCGCCCCCGACGGCACCATGCAGGACCTGGAGACGTACTATCTGACGCGCGTGTCATGGGAGGAGGCCTCGCGCGAGAGCGCGCCGCTCTGCGCGAACCCGAAGCTCTGGCAGTCCACTCAAGAGGTTCGCGCAGAATGACACGTCCAGAGGGGTAGCTTGCTGGTTGCGCAAGGTGCTACGCATCTTGAAAAATGAATACTATAAGTGAAAAATGCACTATCCTGCATAAACTGCCA # Right flank : ATTCGAATCGTGCTCGCTAAATGGACGGCTAAACAACCCGAGAGGCATCCTCGTGCGAACTGGGTTGACGCCTCGCTCGCCGGTTCTTGGGCCGCATTGTCCCAGCTTGCCGCACTACCCGGCAGGCTCGCCTGTCTTGCCCGGCTTCCCCGGCTCGTCCGATCCCGCTGTTGCGTGCGTCTCGTTCGCCCCATACTTCTTTATCGTGCTCGCCATCATGTCAGAAGGGCGATACAGGAACGTGAAGCACTTCGGGCAGCTCACGGCGTTGTCGGGCACCGGCTCGCCGCATTCGGGGCAGCGGCCGTCGTCGATGCGCTCGCCGCTTCCGTCGGCCATGCATGCGCCGCACATCACGCAGGGGATGCACATGGGAAGCCTCCTTCCGCTTGCGGTTTCGCTATCTCCCCCGGCATGCCACCGATCTCGCTCGCGGCCTTCTCGACCTCCTGCCGTATGAGCGCGGCCAGGGAGTCATGCACCACGTTCTCGAAGGGGAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //