Array 1 3116391-3115020 **** Predicted by CRISPRDetect 2.4 *** >NC_011415.1 Escherichia coli SE11, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3116390 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 3116329 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 3116268 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 3116207 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 3116146 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 3116085 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 3116024 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 3115963 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 3115902 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 3115841 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 3115780 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 3115719 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 3115658 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 3115597 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 3115536 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 3115475 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 3115414 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 3115353 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 3115292 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 3115231 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 3115170 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 3115109 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 3115048 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3143342-3142093 **** Predicted by CRISPRDetect 2.4 *** >NC_011415.1 Escherichia coli SE11, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3143341 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 3143280 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 3143219 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 3143158 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 3143097 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 3143036 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 3142975 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 3142914 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 3142853 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 3142792 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 3142731 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 3142670 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 3142609 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 3142548 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 3142487 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 3142426 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 3142365 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 3142304 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 3142243 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 3142182 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 3142121 29 93.1 0 .C..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //