Array 1 166-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMXD01000316.1 Thauera aminoaromatica S2 Cont316, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 165 32 100.0 34 ................................ GGCCACGGTGTCGCAGTCCCAGGCTGACACATAC 99 32 100.0 35 ................................ GGTGATGCCGGCGGTGCGGCCGTAGGTTCGCCAGC 32 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 100.0 35 GTCGCGCCCCCCGTGGGCGCGTGGATTGAAAC # Left flank : CGCGTGGATTGAAACGGTGATGCCGGCGGTGCGGCCGTAGGTTCGCCAG # Right flank : C # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCCCGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-15.70,-15.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7382-10950 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMXD01000029.1 Thauera aminoaromatica S2 Cont29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7382 29 100.0 32 ............................. GGGGCGTAGATGTCGGGCATGGGGCGCGCGGC 7443 29 100.0 32 ............................. TGAATGGCGGCAAGCTTGCCGTCATAGGTGGT 7504 29 100.0 32 ............................. TCGCCGAACCCGCCCTGTGCGCCGCCGGACTG 7565 29 100.0 32 ............................. TGGTGCCGGCGAAGCCGATCGTGGAGGCGATG 7626 29 100.0 32 ............................. CGCACGCACGACGAGCGCGTGGACTTCGCGTC 7687 29 100.0 32 ............................. ATGTAGCCGGAGTCATTGTCGATGAGGATGTA 7748 29 100.0 32 ............................. CCCTGCGCAGCGGCGGCGCGATCAACACCGCG 7809 29 100.0 32 ............................. TCACCTTCATGGCCCATCAGCTTCTCGAATGC 7870 29 100.0 32 ............................. TCGCCCACCGGCGCGATGGCGGGATTCAGCGC 7931 29 100.0 32 ............................. CAACCACGAGCGCGACAATCTGCGCGCCAAGA 7992 29 100.0 32 ............................. GATCTTGACGAGGCAATGCGCTTCGCCGACAT 8053 29 96.6 32 ............................T GCGTCATGCGCCCGCTCGCATCGTCAGCGAAC 8114 29 100.0 33 ............................. CCGCGCGCCCAGATCCTCGCAGACGGGGGCGAC 8176 29 100.0 32 ............................. CGCGGCGTCCAGCTCAATGATCGTTTGCATGA 8237 29 100.0 32 ............................. TTGTCCATCAGGTCAGCGACAGCGACCTGGGA 8298 29 100.0 32 ............................. GCGGCTTCGACTGGGACGAACTCAAGACCGCG 8359 29 100.0 32 ............................. TAGGCGAGGATCTCGTTACGCCAGTTCTTGGT 8420 29 100.0 32 ............................. CGATGGAGCCATGTCACGACCGCATCACGATC 8481 29 100.0 32 ............................. TTGAGCGCGTCCTTGAGTTGGCGCGTCAGCAT 8542 29 100.0 32 ............................. TACATGGTCAGTTCCTGTTCATGAGCTTTTCG 8603 29 100.0 32 ............................. CGTTCTGGTCTGGCGACCGGGTTACTCGGCGA 8664 29 100.0 32 ............................. TGCCCGCACAACCCTGCCCACAAGGAGCCGCA 8725 29 100.0 32 ............................. CCGAGTAACGGCCCAACCCACCGCAGGAGACC 8786 29 100.0 32 ............................. ACGTGGTCGTGCGGATGATGGAAGCCGTGGGC 8847 29 100.0 32 ............................. GAACCATCCTGAAGATCACCGACGAGGAAGGC 8908 29 100.0 32 ............................. ACGCACGATGTAGTCGCGCAGCAAGCGATGCA 8969 29 100.0 32 ............................. TTTTCCCCGCTCTTCGTCGATGCGCTGGCCTG 9030 29 100.0 32 ............................. GCCACCGCGTGCACCGGCTCATCCGGGTGAAC 9091 29 100.0 32 ............................. CGCCATCAGCGCCTGATAGGCTTGCTGACCGC 9152 29 100.0 32 ............................. TGCTCGATGCGGCAAGCGCCATCCTCGCGCTC 9213 29 100.0 32 ............................. CGGAAACAGCAGGCGTCGTGATCGACCTTTTC 9274 29 96.6 32 ............................A TGGTGATGCGCTACCTACGCCTGCGCGGCTCG 9335 29 100.0 32 ............................. ATCAAGGCACCAGACATGCTGGGCACAGCTCA 9396 29 100.0 32 ............................. TACTACGGCGAGGGCGGGCAGGACCAGCACAT 9457 29 100.0 33 ............................. GACGCCAACATCAGCAACCCCACGCCGGGCCTC 9519 29 100.0 32 ............................. GCGCAGGGTCATGTGCCGGCTCCGGCGAATAG 9580 29 100.0 32 ............................. GCTGTGGAGTAACTGAATGGCAGCCAACTACG 9641 29 100.0 32 ............................. GTGTACTTCCGCGGGGCCGCGCCGCTGTTCGC 9702 29 100.0 32 ............................. CATCGCGTTTTTCCTGTGCCAATGGCAGCAGA 9763 29 100.0 32 ............................. GCCAACGTCATCGCCCGCCCCATGCGCAACCT 9824 29 100.0 32 ............................. GTCGCCGGCCTCTACAAGATCCCCATCGCCAA 9885 29 100.0 32 ............................. ACTACGGCCGCGGCGCGATCGCCAAGAACATC 9946 29 100.0 32 ............................. ACTCCCGTTTGGGTCGCGGCCAAAATCGTGGA 10007 29 100.0 32 ............................. AATCACGATCAAACGCGAGGCCGATGGAGCCC 10068 29 100.0 32 ............................. CTGCGAGTCTCGCTGTGGGTTGGCCCGCACAA 10129 29 100.0 32 ............................. TGCTGGGCACCGTACTCGGAGCCAAGGGCGCC 10190 29 100.0 32 ............................. CACGCCGTGGTGCTGACGCAATCCGCGCTCGA 10251 29 100.0 32 ............................. TGATTGCGGTCGCCGTCGCGGTCGCGATGCGC 10312 29 100.0 32 ............................. GAGATGAGCGATGGCTAGAGAGCGCATGAATC 10373 29 100.0 32 ............................. GAGTGAGGAAATGGCTGGCGGACTGCTGATGC 10434 29 100.0 32 ............................. TCCGAGCCGCCCGCGAGGCGGCAGGGCTCACC 10495 29 100.0 32 ............................. ACGAAGAAGCCGAGGCTCATCATCATGCGTGG 10556 29 100.0 32 ............................. AGCTTGCGCGGGTCGAACAGGGCGAGGCGCGC 10617 29 100.0 32 ............................. GTGCCGGTATGAGCTTCGCCCGCCAGATCGAC 10678 29 100.0 32 ............................. CGCACCAGGGGCGTCGCGCCCCGATGGTTTTC 10739 29 100.0 32 ............................. CCCGAGAGATCCGCCTTTGCCAGCGCCGCCGG 10800 29 100.0 32 ............................. GTGGTGGTGGCGCCATCGGCGCCGGCCACGAC 10861 29 100.0 32 ............................. CGCGACCACGTCACCCTCGCAGACGTCATGGC 10922 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 59 29 99.9 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : TGGAGCGCATCATCCCGGACATCGAGGAAATCCTCGGGGCCGGCGAGATCCCCCGCCCCGAAGCACCGGAAGAATCGGTCGGGCCCGCCATCCCCAATCCGGAGAGCCTGGGCGATGCTGGTCATCGTGCTTGAAAACGCTCCGCCCCGACTGCGAGGCAGGCTGGCGGTATGGTTGCTCGAAGTACGCGCCGGCGTGTACGTCGGCACCTATTCGCGGAAGGTGCGCGAGCACATCTGGAGCCAGGTGGAGGCAGGTATCGAGGACGGCAATGCGGTGATGATGTGGCACACCAACAACGAGGCCGGCTTCGAATTCCAGACCCTCGGCCCTAATCGCCGCCTGCCCGCCGACTGGGACGGTGTACGGCTGGTCAGCTTCCACCCGGAAGCGCGACGCGACGATCCTTAAAAACCCGGAAAATTACACCGACAAGCGCATGAGTCGGTAGAATTTTCGCTACCAATATTTCCATGGAAATTCATGGAGATGGAGGAAGT # Right flank : GTGCCGTGCGGCCGATCCTAGCTCGACGGCCAGGTGTGTCAAGCGACACGAAGATTTAACCCCCTGACGACATCTGGAATTGACCCCCTGGGTTAATCAACTCTCCGACGTGATCGGGGTGGGGGCAGCGGCCTTCTGCAGAAGGCCGCTGCGGCGCTTGTCGCGCAGCCGGTAGCTGTCGCCCCTAATTGTGATGACCTGGCTGTGATGCAGCAGCCGATCGAGGATGGCGGTAGCGGCCACCGCGTCGCCGAACACCTGCCCCCACTCGCCAACGGGCCGGTTGCTGGTGATCAGCATGCTGGCCCGCTCGTAGCGTCGCGACACCAGCTGGAAGAACAGGTGCGCAGCGGCCGGCTCGAGCGGCAGGTAGCCCAGCTCATCGATGATCAGCAGCTTGGGCTTGGAGAGCTGCAGCAGCTTCTCCTCGAGCCGTCCGTCGGCGTGCGCCTTCGTGAGCCCGGCCATCAGCGCCGCTGCCGAGGTGAAGAGCACCGTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13190-13767 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMXD01000029.1 Thauera aminoaromatica S2 Cont29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13190 29 100.0 32 ............................. CGTTCCTGGAGCACGTCGACGTCACTGGCGGC 13251 29 100.0 32 ............................. AGGCGGTGGCGCTGTGGAACGGGGCGGCGGTG 13312 29 100.0 32 ............................. GTTGCTTGCGGCTGCGGGCGGAACGTCCCACT 13373 29 100.0 32 ............................. TTGCCGTTGTTTCCGGTGGCGGACTTAATCTG 13434 29 100.0 32 ............................. ACGAACGCAGCCCCGACACCAGCGGAATGACG 13495 29 100.0 32 ............................. CTCACAGGCATGACCGACCCTTCCGACGCAAC 13556 29 100.0 32 ............................. CCGACGTTTCGAGAACTGCAGATGCTGCGCAG 13617 29 100.0 32 ............................. CGCGCGCACGTCTTGCGGATGAACTCGGCCTG 13678 29 100.0 32 ............................. TCGGACGCCGAGCACGTGGCCGCCGGCACGCA 13739 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 33 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : ATCTGTTCGCCCGGTCCGGTCTCGAAGCGGATCGTCGCACGGCGACTCGCCTCCAGTTCCTGGCGGAACCCTCGACACGCGCGCTCGACCGTGCGCAGGCTCGTCTCGATCCCCAATTCCTTGCTCAACTGCTGACGCACCACGTCGCAGTTGCCCCGGTGCTGCAGGAAACGCTCCCGCAGCCATGCGTCGTGACCGCCCAGCACGCTGGCACGCTGCGGCTGCCGGTACGCCACCGGCCCGCCCGCGTTCAGATACCGCCGCACCGTGTTGCGCGCGATGCCCAGCGCCTTCGCAATCCGCTTCGCACCCCAGCCCGATTGCCCCAACCGAACGATCGTCGTGACCGCCTCCGGCTCCAACATCTCCTGCACTCCGCAAACCAGACGGCGTACAGGATTCACCTCGATGTGCTTCGTTTCCAATGATGGCCTCCTCGCGAACGAGGGGGTCAGTTCCTCGTGTCGCTAGGGGGTCAATTTACGGTGTCGCCTGACAAG # Right flank : GGGGCCGGACACGTACAAGGTGTGCGTATTCCGACCCATCGTGACCGCCCATTCCGAGAAGGGTGTGACCGGTGATTCCGAGGTCGTGACCGGCGATTCCGATTTGATCGTGACCGATTCAGGCCGCCGTCGGAATCACCGGTCACGTTGTCGGAATCGTCGGTCACGATCAGATCGGAACGGCCTGTGCGGCCAGCGTGGCAACCATCCTTGTCACGGCTACCCTCGCGCGCTTTGCGCGGAGCGAAGGGATGCCGGCGGAGCGGATTGCCATGCACAAGATCAAGGAGCTGTTACGGCTCAAGTACGACTGCGCGCTCTCGCATGAGCGCATCGCGCGCGCGCTGTCGATCTCCAAGGGCGTCGTCGCCAAGTATTTGAAGGCGGCCGAGGCCAGCGGCGTGGGCTGGGCCGAGCTGGCGGCGGCCGACGAGGCGCGCTTGCGTGCACTGCTGGGCGGGACGCCGCGTCCGCGCGGGACGGCGGTGGGCTACCGGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3158-1186 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMXD01000007.1 Thauera aminoaromatica S2 Cont7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 3157 32 87.5 36 C.GA.A.......................... CACCTCACGACGATCCACCTCGGCGCGGGCGAACTC 3089 32 100.0 34 ................................ TGCAGAAATCCACCCGTAGTATTTTGACGGGCGA 3023 32 100.0 34 ................................ CCAGGGCAGCAGGGGGTAGCGCGGGAGGATGCGC 2957 32 100.0 35 ................................ ACCGCAAGGTCGGCCACGCCGGAAGCGACACGCTC 2890 32 100.0 34 ................................ ACCACGACGGACGGCACGTCGCCCTTGCCGATCG 2824 32 100.0 36 ................................ ATCGGTGACAGCCGCAGTCGCTACGGGTACAGGACG 2756 32 100.0 35 ................................ GGCGACATCGGCGAATCGTGGTGGGACGAGACCGT 2689 32 100.0 34 ................................ CGTTGACGGTGGCGATGAGCTCGACCGGCTCGCC 2623 32 100.0 34 ................................ TGGATCGCGTCGAGATCAAGGAGGCAGCGTGATC 2557 32 100.0 36 ................................ TCGTAGGGGCAGGCCCAGAGGAGCTTGCGCAGCGCG 2489 32 100.0 35 ................................ TCACGGTAGACGGGACGTGACGCCTTGACAAGTGC 2422 32 100.0 38 ................................ CGTACGGTGAACGCGGCGGGCGTCGGGCAGGTGATCGT 2352 32 100.0 34 ................................ CGCCGATCATCCCGATCCAGCACGAACAGCACCT 2286 32 100.0 33 ................................ GACCGCCTGGGGGTGCTGCGCATGGGGCGGCTG 2221 32 100.0 34 ................................ TCGAGCAGGATCGGAAAGTCGCCGGTGCCCTGCG 2155 32 100.0 35 ................................ GGACACGGGGGCCCGGTTATGGATGACGAGCGCGG 2088 32 100.0 35 ................................ AAGACCGTCGACGCCCTGGTGTATGACCTCATCGC 2021 32 100.0 34 ................................ GCCGCGAGCTTGTCGGCCGGCGCAGTGAGCGCGT 1955 32 100.0 34 ................................ CCACCGCCGCCCACCGTCCGCGTAGTACGGCATC 1889 32 100.0 34 ................................ TGGTGCACGATGCGCTGGCCGAGCGGGTGTGCGG 1823 32 100.0 34 ................................ GTCGTCGAATAGTGATATCCGACAGAGAGGATCG 1757 32 100.0 35 ................................ GGTCAGAGATGAGGCGTCGTAGACCGAGAACAGAG 1690 32 100.0 35 ................................ TTCCTTTTTGTGCGGCCGTCATGCCGCAACGCTGA 1623 32 100.0 34 ................................ GATACCTACACGACCGAGGACGCTCCGAGCGAGT 1557 32 100.0 37 ................................ AGCACGTCGAACTGGCGCTGCACGCTCACCAGGCGAC 1488 32 100.0 36 ................................ GCCGTCGCTCGGGTCCGATTTATGACTGGCCGGATG 1420 32 100.0 35 ................................ ATTACCGCGATGTTGATCGCGTTGGGCGGCTACAA 1353 32 100.0 37 ................................ AGTTCGTCGAGCGTGCAGCGGGCGGGCGCGGTGGATT 1284 32 100.0 35 ................................ GTAAAGAGCGAAGTCGACCCGATGCTGCGGGACGT 1217 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 30 32 99.6 35 GTCGCGCCCCCCGTGGGCGCGTGGATTGAAAC # Left flank : CGATCTGCATCTGTTCGCCCGGTCCGGTCTCGAAGCGGATCGTCGCACGGCGACTCGCCTCCAGTTCCTGGCGGAACCCTCGACACGCGCGCTCGACCGTGCGCAGGCTCGTCTCGATCCCCAATTCCTTGCTCAACTGCTGACGCACCACGTCGCAGTTGCCCCGGTGCTGCAGGAAACGCTCCCGCAGCCATGCGTCGTGACCGCCCAGCACGCTGGCACGCTGCGGCTGCCGGTACGCCACCGGCCCGCCCGCGTTCAGATACCGCCGCACCGTGTTGCGCGCGATGCCCAGCGCCTTCGCAATCCGCTTCGCACCCCAGCCCGATTGCCCCAACCGAACGATCGTCGTGACCGCCTCCGGCTCCAACATCTCCTGCACTCCGCAAACCAGACGGCGTACAGGATTCACCTCGATGTGCTTCGTTTCCAATGATGGCCTCCTCGCGAACGAGGGGGTCAGTTCCTCGTGTCGCTAGGGGGTCAATTTACGGTGTCGC # Right flank : CCAGAATACACAGCATAGGCGCCGACGAATGCATACTGTCGCGCCCCCCCGTGTGTCAAGCGACACGGGGATTTGACCCCCTATGCGATATCTGGGCGTGCCCCCGGATTGCGCAATTCTTCGATGTGATGGGGTAACGGGTCTTAGGCCGGGTCTTCCTCGTCCAGCATGCGCTTGAGGTAATCCGGCACGCCCGACAGCACCAGGGTGTCGGTGGCGCGGTCGTAGTGCACCGCGCCGGAATGCAGGCCGCTGCGCTCGAACTCCAGCTTCCAGTTCTCCGCGCTGGCGCTGAAGCGTACCAGCGGGCGGATGGCGCGCCGGTTGGGCACGAAGCCGGGGGCGATCTTCGTCTCCTCGGCGCGCAGCAGCGCGTCCAGGCGCTCGGGCTGTTCGGGGAAGACCTCGCACGCGAGCTCCTCGAACACCACCGGGGCGCCGGCCTCGCCGAGGGTGTCGAGGTAGTCGTGGGCGCGTTCGAGCACGGTGTCGCGGGTGGC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCCCGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.90,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 9727-5399 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMXD01000007.1 Thauera aminoaromatica S2 Cont7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 9726 32 100.0 34 ................................ TCCACCGCGGCCTTGATCGCAGCGCCGATCTCCT 9660 32 100.0 35 ................................ ACGCAAACGGGCAAGGGCGTCTTGGGCGGCAGCAA 9593 32 100.0 33 ................................ GGCGGGGACGACGGAATCGTCGATCGCTGCTGC 9528 32 100.0 35 ................................ TATCGCGAAACTGACGATGCACCGACGCGCCTGGA 9461 32 100.0 35 ................................ TCGGTGCGACCGGCCTGCACGGGCGCGGCCGACAG 9394 32 100.0 37 ................................ GCCGAGACGCCGTACTACGAGGCGGGGCTCAAGAGCT 9325 32 100.0 35 ................................ AAGTCGCTGCCCGACACCCGGGTGGACGAGAACCG 9258 32 100.0 35 ................................ GTCAAGCCCGCCGCCGACGGCAGCGGCAAGGCCGC 9191 32 100.0 37 ................................ GTTGCGAGAATCGTCGGGACTGAGATCGTAGACTGCG 9122 32 100.0 38 ................................ GCGGCCGGCGTGGAGAGCGTCATGCCGTCGAGCTGCAT 9052 32 100.0 35 ................................ TCGGCCGGTTATCCGCTCAAGTCGACCGCCTGCTA 8985 32 100.0 33 ................................ GGCGACATCGTCACCTGGTCGAAGGCCTGCTGG 8920 32 100.0 35 ................................ CGCAAGAAGTCAGGCGCCCGTAACGAGCCGCTCGA 8853 32 100.0 38 ................................ GCTCTCATGCCGGGCGCGCGAGGGGGATTAGATTTACG 8783 32 100.0 36 ................................ AGCAGCATCCGCAGCGGCACGATTGAAGAGCGCGAC 8715 32 100.0 36 ................................ GCGGTGCAGGAGGTGGCAAGATGAAGATGGCCAGAG 8647 32 100.0 35 ................................ CGCTGCCATGAGCATCGTAATCGTCTCTTACTCGT 8580 32 100.0 33 ................................ ACGATGCTGTCGGGGCAGTCGACGCAGTCGGAT 8515 32 100.0 33 ................................ TCCGGCAAGTGGCTGTACGACCGAGGCTTGCGC 8450 32 100.0 34 ................................ GACATCGGCCCCTCAGCGCAGCAGCTGCTGGCGC 8384 32 100.0 35 ................................ TTCCTGTTGTCGCGTTTCGTGGTGAGCCGGAGCGA 8317 32 100.0 35 ................................ AAGGTGACAACAGTTGTCAAGAGGAAAACGAGCGC 8250 32 100.0 35 ................................ GGCCACTCGTATTGCTTGCGGCCGAGGCCGGTGGC 8183 32 100.0 38 ................................ AGGCAATCAAATGGCTGCAACGTGCGGCCGGCGCAACC 8113 32 100.0 34 ................................ GCGTAAAGCTCACCGCCGACACCTCCGGGCTGCA 8047 32 100.0 36 ................................ GCCCCGGCGGTGCAGCTCATCAATCCGTCGTACCAG 7979 32 100.0 35 ................................ TCGCAACCGCTTTTCGACCCCCCGCCACGCGCTGG 7912 32 100.0 34 ................................ GTCGCCCATGCGGGCAAACTCGGCACCGTTGCCG 7846 32 100.0 33 ................................ CGCAGACGCTGGAGCAGTACGAGGCGCTGGTGC 7781 32 100.0 34 ................................ CACAGCTTGCGGTAATCCCCGACCGTGCGCGGCT 7715 32 100.0 33 ................................ GCCTATCTCGAGAAGCTTGCCGACAAGGATCCG 7650 32 100.0 35 ................................ CGCGATCTGCGCGCCAAGGCCGCCAGCGATGTCGA 7583 32 100.0 34 ................................ CAAGCTCAACAATCATGCTTGCCGCCTCACAGCA 7517 32 100.0 36 ................................ TTCCGGACAGCATACCCCGTTCCGCTTTGGTGACGT 7449 32 100.0 37 ................................ TTCGATCTCGCCGGCCGCGTGACCATAGCTGCGCGCC 7380 32 100.0 34 ................................ TGGGTCGCCCTCGAGGCTGCTCAGCAGCAGCCCG 7314 32 100.0 35 ................................ TTGCGAACGTTCTCGCGGTGCCAGGCGAGCACTTC 7247 32 100.0 35 ................................ ATCCGCGACTGCGGCGACTGGCTCAAGTTCTACGG 7180 32 100.0 35 ................................ GTGGAGGGCGCCACGCCCGACACCGGCGAGATCCA 7113 32 100.0 33 ................................ GCCGCCGCCCGCCTGGCGATGGTGAAGCAGGTG 7048 32 100.0 35 ................................ GCGTGGATGGCAAGACGCACGCCGCGGCGAACGTA 6981 32 100.0 36 ................................ CGCGTCGAGTCCTCGCCGGTCAAGCCGCAGTCCCTC 6913 32 100.0 35 ................................ TTGCCGGCGTAGCTCAGGTTTGCGATCTGCTCGGG 6846 32 100.0 36 ................................ TGATGCTGTACCGCCACCTGAAGACGGGCCACGCCT 6778 32 100.0 35 ................................ CTGCAACTGATGTTGGTTGGCGAGACCCCCGTCAT 6711 32 100.0 35 ................................ GCATCCACACCAGCGCAGGATACTCGGCCGACGAT 6644 32 100.0 36 ................................ GTCCAATGGCGCCGCAGCCGAGCGTCCCGCACAATC 6576 32 100.0 35 ................................ AACGGTCGGCGGCAGTGCGCGCAGATCATGCCGGT 6509 32 100.0 36 ................................ TCCGCATAGGACTGGAACGCGCGCTGCAGGTCGGGT 6441 32 100.0 33 ................................ CATTCCCGGCGACACGACGACCAGTACGACCAG 6376 32 100.0 38 ................................ GGTGACTTCTCGGAAGAGGATCTTGCGAAGGGTGTCGC 6306 32 100.0 36 ................................ GAGCACGGGATTTGGCGAATGACGGACGTTGCGACG 6238 32 100.0 34 ................................ GTGACGCTGTGGGGGTTGCTGGTATTGCCGGCGT 6172 32 100.0 36 ................................ CACCTGGCCGTCGACCGTGAGCTTGTAGTAGCTGAG 6104 32 100.0 36 ................................ TGCGCCCCCTGATCGAAGGCGCGCGCGTGGTTGAGG 6036 32 100.0 34 ................................ GGCCACGGTGTCGCAGTCCCAGGCTGACACATAC 5970 32 100.0 35 ................................ GGTGATGCCGGCGGTGCGGCCGTAGGTTCGCCAGC 5903 32 100.0 35 ................................ CGGCGTGCTGCGTAAAAGTCGGGAAAGGGCCGGTG 5836 32 100.0 40 ................................ TTGAGTGCCACCAGTAGTTTTCCTCCGCGCGCTGCGTCAG 5764 32 100.0 36 ................................ TTGAGCGTCTCAAGCACGGGCGTGCCGAGCTTGATC 5696 32 100.0 34 ................................ CATGTCGGATTCGACGGGCAACCAGTCAAATTCG 5630 32 100.0 34 ................................ GCGCCCATCGCCAGCACGTCAGCGACGCGGCCGG 5564 32 100.0 37 ................................ GGCAGCGAAGTGAAATCCAGCGCCATCGTTGGTGATC 5495 32 100.0 33 ................................ CTGCTCGAGCTGCGCAACTGCCCGTTCGACCAG 5430 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================== ================== 65 32 100.0 35 GTCGCGCCCCCCGTGGGCGCGTGGATTGAAAC # Left flank : TGTCTGGAAGTAGGGCAGCGTCATGATGATTCTCGTCAGCTACGACGTCAGTACGAGCAGCACAAGTGGCCAGAGGCGACTGCGTCGCCTAGCCAAGACGTGTCGCGACTACGGGCAGAGGGTGCAGTACTCGGTGTTCGAGATCGAGGTGGACTCCGCGCAGTGGACCTTTCTAAAGAATCGGCTGTGCGAACTGATCGACCCGGAGCAGGACAGCCTGCGGTTCTACTATCTCGGCAGAAACTGGCAGAACAAGGTCGAACACGTGGGCGCGAAACCTGCGCTCGATTTGAACGGCCCGTTGATACTTTGACCGTCGCCCGGTGCGAACCCCAAGCATCCTGCCCAGCCCCCGGTTGTTCGCAGCGGCAACAAACGCTTGTTGCGTATGGTGAGTGCCAAGCAAGTGGTCATTTGGTGGCCGCTTGACGTGACACGTGGCACTTGGTTCGCAGATCTGGGGTATTTTCACCGTGTCTTCAAGCGGTTGTGGAGACAGA # Right flank : AAATTCAGATAGGTGAGGCTGAATCCCTTGCGGCGTCGCGCCCCCTGTCAAGCGACACGAAGATTTAACCCCCTGACGACATCTGGAATTGACCCCCTGGGTTAATCAACTCTCCGACGTGATCGGGGTGGGGGCAGCGGCCTTCTGCAGAAGGCCGCTGCGGCGCTTGTCGCGCAGCCGGTAGCTGTCGCCCCGGATCGTGATGACCTGGCTGTGATGGAGCAGCCGATCGAGGATGGCGGTGGCGGCCACCGCGTCGCCGAACACCTGCCCCCACTCGCCAACGGGCCGGTTGCTGGTGATCAGCATGCTGGCCCGCTCGTAGCGTCGCGACACCAGCTGGAAGAACAGGTGCGCAGCGGCCGGCTCGAGCGGCAGGTAGCCCAGCTCATCGATGATCAGCAGCTTGGGCTTGGAGAGCTGCAGCAGCTTCTCCTCGAGCCGTCCGTCGGCGTGCGCCTTCGTGAGCCCGGCCATCAGCGCCGCTGCCGAGGTGAAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCCCGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.90,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4231-7027 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMXD01000005.1 Thauera aminoaromatica S2 Cont5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 4231 36 97.2 37 ..............G..................... GCCCGCAAGCCGGCGAAGTTCGCGGCGGATACCGATT 4304 36 100.0 38 .................................... GTGCCGGGTCAGACGACCACGACCAGCACGACGGGCCC 4378 36 100.0 35 .................................... GGCGCGGGCATCTGCGCCTGTGATGGGGGTCATGC 4449 36 100.0 36 .................................... ACCAATCGAGGTTGTACCGCTGGCCGGTGTAGTCAT 4521 36 100.0 37 .................................... ATTGATCCGATGGCTGCCGAACTTCACGGCGCTGGTG 4594 36 100.0 35 .................................... ATACGCAGCCGTGATCGCGTCGTATTCCTCATCGG 4665 36 100.0 36 .................................... GCTGCCGTGGCGATGGCTCGCCAGCGCCGCGAGGCC 4737 36 100.0 36 .................................... CATCCGCCGCATTGCAGGCATGCTCGACGGTCACGA 4809 36 100.0 35 .................................... CAGCAAGAGAGCATCGACCAGATCAAGGCCGCCAC 4880 36 100.0 37 .................................... ATCGTGAGAGCCAATACGTCTTTCCCGCATGGGATCA 4953 36 100.0 38 .................................... ATCGGCTGGAACGGTACCAGCGCCGCGGCCACGACCAA 5027 36 100.0 36 .................................... CAACTCACAGCGCTCGACGAGGCGAACAACCTACTC 5099 36 100.0 38 .................................... CAGAAGGCGCCCACCTGCAAAACGCGGTCGTGAACGAG 5173 36 100.0 38 .................................... CGCGAGTCGGCGAGTTCGGCATAGCGCACGCCAGATGA 5247 36 100.0 36 .................................... GCCGCAGACAAGGCCGAGGCCACCGCGAAGCGCGTC 5319 36 100.0 36 .................................... GTGCGGTACCTGGGGCGCGTTGTTACCGGGAGGGCT 5391 36 100.0 35 .................................... TCCGTCTGGACGTGCCCCATTTGTTCCCGGCGGAT 5462 36 100.0 36 .................................... ACCCGCCGCACGGCCGGACATGCGGAACCCCCGGCG 5534 36 100.0 36 .................................... GCAGCGCTGGATCCTGGCGCGGCGTAAGCACCCGGC 5606 36 100.0 38 .................................... CGGCTGCCGGCCGACTGCCCGGAACCGACGCGGGACCA 5680 36 100.0 37 .................................... GCGGGCGAACACCGCCCTTGCGCCCGATGCCGGCGTA 5753 36 100.0 38 .................................... GCCTGCGCTCCGCTGCGGCTTCCGGTTCTCCCTTGACG 5827 36 100.0 35 .................................... ATCGAAAGGGATGTATTCAAACCGCCCAACGCCAT 5898 36 100.0 36 .................................... CACCCTTCCTGAGTATCAGCGCGTCACTTCTGCCAC 5970 36 100.0 36 .................................... ACCCCAGCCCGCCGCTTCACCGCCGCCACCGGCGCA 6042 36 100.0 37 .................................... CCATCGCCGTCACGGGCAGCGTGCCTGCGGCGTCCTG 6115 36 100.0 38 .................................... GCAGCGCATCCTGCGCAACCCGCTCCAGCCCGGTAATC 6189 36 100.0 38 .................................... TGGATTACGCGCAGCTGCTGCGCTTCGGGTATCGGGTG 6263 36 100.0 36 .................................... GACCTGCGAGCGCGTTTCCGCCACCGCGCGGCCAAT 6335 36 100.0 36 .................................... CGCATTGGGGCCGATCATGAGGACGCCCATGGCGAG 6407 36 100.0 37 .................................... TGTTGGTCATGGCTCAGTCCTCCTCGACGATCACGGC 6480 36 100.0 37 .................................... CAACGGCGGCAAAGTCCTGAAGGTCTCGGCCGATGGA 6553 36 100.0 38 .................................... AACGGCTTCAGGCGCAGCCGGCCGAGCTGGAGCGCGTT 6627 36 100.0 39 .................................... GAGGGATCTGGAGCGCGAGAGCGCCAAGCGCTTTGACAA 6702 36 100.0 38 .................................... CGGTTGGCTATTGGGAGGTGCAGGATCTTCGATTCGAG 6776 36 100.0 37 .................................... CGAAGAGGTCGCGCGAAAGAACGGCAAGAGCACCTGG 6849 36 100.0 35 .................................... GCCGCATCATGGACACCGGCAAGCGCCACGGCGAC 6920 36 100.0 38 .................................... CCATGCAGCAGATGAACCTGATGCAGCCGCAGCAACCC 6994 34 83.3 0 .......................G..--.CT...C. | ========== ====== ====== ====== ==================================== ======================================= ================== 39 36 99.5 37 GCTTCAATGAGGCCACGGCTTATTGCCGTGGATGAC # Left flank : GCGGTGGCGAACTTCTCGGCGGCGAATTTGGAGGCCTTGGCGATGTCGTCCTGCGCGCGTCGGCGCAGGTTTTCGGTCTCGGCCTTGGCGCGCAGCCAGGCGTCGTGGTGCTCGGCGGCCTTCAGCTCGGCCTGGCGCAGCGCCTCCTCGAGGCTCGGCATGCTGTCGATGCCGTTCTCCGGCGCGGTGTCCGCCGCCGCAGCGGCGGCCTGGAGGTCGAGCTCCGGGCCTCGCTGCGCGGGCTGCTGCGCGCCGCCCTGCGCGGCCTGTTCCGCCGGCTGGTCGGTGGGGTTCTGGCTGGCCTGGTTCGGGTCCTGCATGTCGGTTGGCTCCGTGTTGGAATGCGAAACAGCCGGGTACTTGGGGACGGTCGGCGCGAGTTCAAGAGGCTTGGGTCAAAAAATGTTGAAGGCGCTCGTGCGGGCCGAGGCTCCAAACAGGTCAAGGTTCGACGCCGCAGATGACGAGCAACTCGTACTGCAGCCGATGCCCTACGGTGC # Right flank : CCTTTCCAGTGGAAATTGACTCAACAACAAACCGTGTGATCGGTGGTACAACGCCCCGATCTTGACCGCACCCGCACCCGCACCCGCACCCGCACCCGCACCCGCACCCGCACAGACCATGAGCTCTCCGATCGAAGCCCTCTTCACCACCGCGCTCGGCCTGCAGCCGCCCTGGTACGTCGCCAAGGTGGACCTCGACACCGCGAAGCGGCGGATCGACTTCGAAGTCGAGCACGCCGGCAAGCGCGTGCCCTGTCCGGCCTGTGGGGCGGCGCATCAGCCGGTCCACGATCGAGTGCGGCGCAGCTGGCGTCACCTGGACTTCTTTCAGTTCGAGGCGTGGCTCCATGCCGACATCCCGCGCGTGCAGTGCTCGGGCTGCGGCAAGACCACGCAGCTGCCGGTGCCGTGGGCTCGCGAGGGCAGCGGTTTCACGCTGCTGTTCGAGGCGCTGGGCCTGTCCCTGTGCAGCGAGTTGCCCGTGCGCCAGGCCGCCGCCC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCACGGCTTATTGCCGTGGATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.20,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 12999-8557 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMXD01000005.1 Thauera aminoaromatica S2 Cont5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 12998 36 100.0 35 .................................... CTCAAGATCGGCGCTTCGACTTCCGTCGATTCGGC 12927 36 100.0 36 .................................... CAGGCCGTGCCGGTTGCGGACCATTTCCAGCGCACG 12855 36 100.0 35 .................................... ACGGATACCGTGAACGACGTGAACGGCGGAATTTG 12784 36 100.0 36 .................................... ATTTCAAGCGATGCAATGCACATCCGCTTTAGCTGC 12712 36 100.0 38 .................................... CTGTCTTCGACCATCGTCGGCAAGCGCGCCAACGCGGG 12638 36 100.0 35 .................................... CGCTGGCTGCGGCGTGCTATGCGCTGAATGCCGCT 12567 36 100.0 35 .................................... GGGGCATCCCTAAGTAAAGACACAACCAGGATAGC 12496 36 100.0 35 .................................... CTGCTTGTGTGCGCGTGCCCGTACCTGCGCCCAGA 12425 36 100.0 35 .................................... ATCGCATCCAGGCGATGAAGGAGATCAGCATCGTC 12354 36 100.0 38 .................................... ACCTTCGGCCAGGGTGGCGCCAAGATGTACTTCGCCGG 12280 36 100.0 37 .................................... CTACCGCGTCGATATATCCGTCGTCTTCGCCAATTGC 12207 36 100.0 37 .................................... TCGCCGCGCCAGATCACCGACGACACGCTCCGGGGGT 12134 36 100.0 37 .................................... GCCAGGTGGTGAATACACGGCGCAGGCCGGCGCCGTT 12061 36 100.0 35 .................................... GCGGACGTGTGCGAACTTAATAGCGGGGATGTGCT 11990 36 100.0 34 .................................... ATCGCGCGCGGCCTGCGTCTTTTCCCAAGAGTCC 11920 36 100.0 36 .................................... TTGATCTTAAGCATCTCAATCTCCTAGCCCCTGTTC 11848 36 100.0 36 .................................... TCGTCCGTTGGCCAATCCGGCCTCATGTATGCCGGC 11776 36 97.2 36 .......C............................ TCGGGCGACCCCGAAAAGATGTGGCAGGAGTATCCG 11704 36 100.0 37 .................................... CTGGAGCCGGCGACTGACGCGGCGGGCAGGCTGTGGG 11631 36 100.0 37 .................................... TCGTACGCCACCCGCACGCCACCGCGCGCGCCCGTCA 11558 36 100.0 35 .................................... TAGCCGACGAGGCACTTGTAGCCGTAGCTCTTTTG 11487 36 100.0 37 .................................... TCCGGTAACTGTGTCGCTTGTCGCTTCTCCGATCAGT 11414 36 100.0 37 .................................... CTCGATGCTGCGGCCCGTCATCCCCAGGTCCGCCAGC 11341 36 100.0 36 .................................... CACGAGTCCACGCTGGCCGACGTGGCCGCCGCCTGC 11269 36 100.0 36 .................................... AACGCATACGCGGGGCGAGTCGTTGCATCGACAGAC 11197 36 100.0 37 .................................... GCTGGCCGGAGATGTGGCCTCCATCCCTGCGACCGAC 11124 36 100.0 37 .................................... CGACGCCCTCGTCCATCGTGATTGTCGCGTTACTTAC 11051 36 100.0 37 .................................... AATAGAGTCACTGAAGCACACGGCACACCGCCACCCG 10978 36 100.0 36 .................................... ATGCCCGCCGGCATGCTCATGGTCACCACCTTCGAC 10906 36 100.0 36 .................................... GTGCGCGCCGGCCAGGCCACCACCGCCAGCGGCAAG 10834 36 100.0 35 .................................... ACGAGCTGCAGCCGCGGCGCGCGCATCGAGTACAG 10763 36 100.0 35 .................................... GTCATGTGGGGTGGGTCTCGAGCTCGATGGACTGG 10692 36 100.0 37 .................................... ACGAGGTCGTGGCGGCGGTTGGTGGGCTTCCACCACG 10619 36 100.0 36 .................................... ACGGGCGAGGACGCATACATCGTGGGCGGGTGCTAC 10547 36 100.0 38 .................................... TATCTGGCCGATCGCTTCGAGCGCGACGTGTCCCGCTT 10473 36 100.0 37 .................................... GATGGTATCGGCCCGGTGATCGCGCATCCGCCGTGCC 10400 36 100.0 39 .................................... GTTATTGCCTGCGGGGAAATCCCAAGTCGACGCGCGATC 10325 36 100.0 36 .................................... TAGTAAGCCGTTTTGGTGGCGATGAGCTTACGAAAA 10253 36 100.0 37 .................................... GTTGCCTTCCTGATCCCGGCACTGAGGTTCCCCGCAG 10180 36 100.0 36 .................................... CTCGGCACGGACGAACTCGAGCAGCAGCGCGAGGAC 10108 36 100.0 36 .................................... GACGACCCCGAGATCCTGATCACGCAACTCGCGCAG 10036 36 100.0 35 .................................... TCAATTCCGAAGCATGATCCGCTTGATGACCTTTA 9965 36 100.0 36 .................................... TTGTGGCGCTGTGGGATGGGAAACCCGGCACTTTCG 9893 36 100.0 36 .................................... TTCGGGTTGATGCGAATCCACTCGCCGGTGATGAAG 9821 36 100.0 37 .................................... TGAATGGATGGGTCGATGTTCATGCTCGCAATTCAAC 9748 36 100.0 38 .................................... TGCCCTACCAGCAGCGCGTGGTCGAAGAGAAGGACGAA 9674 36 100.0 37 .................................... GTCAGGGTGCGCCATGGTCACGCCACCCCCGGCATCT 9601 36 100.0 36 .................................... GCGGGGGGCTGGATCGCCTGCTTCCACCGGGGCTGA 9529 36 100.0 34 .................................... CCCCATCCATTAGGGGCATCCGGCCAGTCGTAAA 9459 36 100.0 37 .................................... ATCGGGATCTCGGCCGCTGATTGCTTTTCTGCTAGAC 9386 36 97.2 36 ................G................... CTCGCTGATGCTCTTTTCCCAGGTCGCGCCGGCGAG 9314 36 100.0 37 .................................... CTGGCTGAGTTCGCGCTTGGCGAGCTCGATCTTCTGC 9241 36 100.0 37 .................................... CTCGACCGTATCCGCGTCTTCGGCCATCGCATTGAGC 9168 36 100.0 35 .................................... GACTGGCGCACATGCGCAACGCGCCCCTCGATGTC 9097 36 100.0 35 .................................... GTCATCGTGTATCCAAACCATGTGCCCGCTCCAGG 9026 36 100.0 39 .................................... AATGGGCATTGGATCAGACCTCGGTGAGGCGCAGGGTGA 8951 36 100.0 34 .................................... ATGCCGCCCGCGACCAGCGCCTCATAGTCGGGCT 8881 36 100.0 36 .................................... AGCGCCTGGTATCTTGACTGGAGGCCGAGCGATTCA 8809 36 100.0 37 .................................... GCGAAGCGGATGTTCGATGCAGTCACAAAGTCGCGCA 8736 36 100.0 36 .................................... ATGCCCCGGATCTTCTGGATCGTCGGGTGCATGCCG 8664 36 100.0 36 .................................... TTGTCTGACATTTGGTTGGCGGACGCGCTGCGCGAG 8592 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 62 36 99.9 36 GTCATCCACGGCAATAAGCCGTGGCCTCATTGAAGC # Left flank : GCTCTTCACCCGCACGAGCGATCTGGTGCAGCGCCTGCAGGCCGCCCGGCGCGATCTGCGCTTGCCGGCCGAGCTGGCCAAACTCGACCGCTTCGACCTGCTGATCTGCGACGACTTCAGCTACGTCCGCCGCGACCAGGGCGAGACCTCGGTGCTCTTCGAGCTCATCGCCGAGCGCTACGAGCGCAGAAGCCTGGCCATCACTGCGAATCAGCCGTTCTCGGAGTGGGGCCACGTCTTTGCCGAACCGGCCATGACGCTGGCCACCGTCGACCGGCTCGTGCATCACGCCACGCTCTTCGAGATGAACGTGGAAAGCTTCCGCCGCCGCGTTGCTCAGAAGGGGCTCGCCCCTTCTGAGCAACGCACCCTCAACACCTCAAAGCCGAAAGGCTGAACCCCTCATGCCTCGCTTCCACCGGCCAGGATAATTGACGTCGACCGGCCAAGGTAATTGACGCTGGGCATTCATGTGAACTCTCCTCATGAGCTGGTCCCGC # Right flank : CTGCGCCACTCGCCACGCGAGCACCGCGCCATCCCGTCATCCACGGCAATAAGCCGGGCTCTATGCCCTTTCCAGTGGAAATTGACTCAACAACAAACATGACGGTAGCGCCCGTATTCGCGGGGGATCGCCGGCACCATGGGGTTCTTCGGTAGATGCTCGAGCTTGGACATGCGCAGGTAGGCGACGGCGATGAAATTGTCGAGGTTGCGGAAGCCTCGGGCGGCGGTCTTCGTCTGCTGAAGCTGCCCGTTCATCGCCTCGACGTAGGCGTTGCTGCGCCCGTCGAGCATGCCGCGGAGCACGCCGCCCAGATGCGCCTTGACCGTGGCGCCGAGCCGCTTGAAGGGTTCCAGGCGAGAGCGTCGGGCCCAACTGATCCACTTCATCAAGGCCCCGCGGGCGACCTCTTCGCAGTTGCTCGCCGCCGCCTCGCGGTAGACGAGCCGCAGGCCCTGCTTCATCCGCCACGCCCGCGCACTCTTGAGGCCCGAGCGCTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATCCACGGCAATAAGCCGTGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.20,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 15526-16066 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMXD01000005.1 Thauera aminoaromatica S2 Cont5, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 15526 36 100.0 37 .................................... TTTTCGAAGGCTGTCTAATCTGCTTACGTTCGCAAAC 15599 36 100.0 35 .................................... GGCGCGCCCGCTGCCGCCGCACCCGAAGGCCAGGA 15670 36 100.0 37 .................................... CTCCGAAGAACCCGACAGGTTCCGAAACCGAAACCCA 15743 36 100.0 36 .................................... TGCGCAACAGGTCGACGACGGCGACTGCGAAACGGC 15815 36 100.0 36 .................................... CCCGGACGGTAGTAAGACGGAAACGACGACGACTAC 15887 36 100.0 36 .................................... GGGAGCCGGCCAGACGCGGGAAAAGGCGGGGCCTCC 15959 36 100.0 36 .................................... CCGCTTTCGCGAGGGGTACGTCGAAGTGCCCCGCAA 16031 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 8 36 100.0 36 GCTTCAATGAGGCCACGGCTTATTGCCGTGGATGAC # Left flank : ACACCTCCTTCTCGTGTCCGTGCTCGGCGCGCCACATGCGGATCCGCCGCTGCAGGGTGCGCAGCACCCCATCGCCGAACACCTCACCGTGACGGCGCTGCAACTCCTCGAGCAGGGTTCGGCCCTGCAGCCCGGGTTCGCGCTCGAGCAAGGGCACCAGCTCCTGCTCCCAGACGTCCGCCAACGGATCGGCGCGCGTCCGCCATGTCCTCGGTCCGCGCTGCGACGGCAACCCGTCAGCCTGCTCGATGCGCCGTGCTGAGCGCACGCTGATGCCCATCCGGGCCGCCGCGATCTGCTGCGTCGCCTGCCTTCTTGCTTCCTTGTATTTGCGCACTTGTTGGTCCGTGATCTTCTTGCCGGGCACCGAGCGCCTCCCAACGCCTGTCGTCAGAAGAGCACTCTATCCCTCGCTTCCGGACCTTCCCGGCTGCAGATCCAACCGGCCAGGATAGTTGTCGTCGACCGGTCAGGTTAATTGTCGCCGGCCACATGAAGCA # Right flank : CAGCCCCTCGCGAAATCGCCTGTTTCTGCTGAAGATTTGGCGCTTCTTGCGAGGGCTGTGTGCGCATACGTTCCTAGGCGTTCGAGTCAAGCAGAATAGTACCCGGCAGCTGGGGGAAATGCTCCATGTTTTCAATTCCCTGCGACGTTGCGAGCGCTGGCCGAGGCAATGTTTGGCACTGGAGCGCTCGCGTCCGCTCGGCGGGAAGGAACGCGGCCTCGGAGGCGTCAGACGATGACGGAGGCGCGTTCGACCGGGGTGAAGTTGCGGCCCAGGCTGGTGATGTGAGGCGCCACCCTGTCGGCCGGGCCCACGTCCATGAGGACGACGTGATCGTCGGCGTGATGGATCATGCCGTCAAGCAGAGCGATCAGTTCGGCATGACGTTGCCGGTTGAGTCGGCATTGGAAGACGGAGAGCTGAACCCACTCGCCATAGCCTTTCATGATCCTGAAAATCCGCCGCCAGCGTTTCGGGTCGCGGATGTCGTAGGTCACGAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCACGGCTTATTGCCGTGGATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.20,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //