Array 1 988404-987099 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVHZ01000001.1 Hungatella hathewayi strain AF31-1 AF31-1.Scaf1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 988403 33 100.0 33 ................................. AGTTGGGCAGTAAGCCAAATATAGTTAAAACGG 988337 33 100.0 33 ................................. AAATGTGACCGTGCCGCTATCTCGATAGAATCC 988271 33 100.0 33 ................................. AGAGAAACAAGCATAGAAATTAGACAAATTTAT 988205 33 100.0 35 ................................. ATCACCGAACCGGAATAAGGGCATGTCCGACGTAG 988137 33 100.0 34 ................................. AGTTTTAGTCTGATATCTTACCTCTGCATCCGGC 988070 33 100.0 34 ................................. CTCAATAACAGCACCCATCTGCTCCCCGTCTGCC 988003 33 100.0 34 ................................. ACTAAAGGAAGCAGTCACTCCTCCCTTTCCTAAC 987936 33 100.0 35 ................................. ACAAAGGCAGCTGAGAAATTTCTGAAAGATAACCC 987868 33 100.0 33 ................................. ATCCGAAGGGATAAAGAGGGACTTAAGCCCCTC 987802 33 100.0 35 ................................. AACCACGTTGCGCATGTTGCGAAACTTTGAAACAA 987734 33 100.0 33 ................................. GTCTCCGCTAAGTCAATCACTTTACGAGTATAA 987668 33 100.0 33 ................................. AAATATCTAACAGGAGATACAGGAAAATATCTC 987602 33 100.0 35 ................................. AACTCCTCGCCACGGAGGACACCGGAACCCAGCGC 987534 33 100.0 33 ................................. TTCCAGTGTAGGAAAAAGTACTATTGCATTTAC 987468 33 100.0 35 ................................. CCTGCCATGTCCGATGGGACGGCCTTGCACCAGCG 987400 33 97.0 34 .............G................... TTATTTTAGACAGGCCGTAGGTAACTGTGAAATG 987333 33 100.0 35 ................................. CCATGGTCGTGTATTTGACCAGTGAGTGCAGACAA 987265 33 100.0 34 ................................. TTTGATGGCACCAAGTACTACCCCTCTGGTTGCA 987198 33 100.0 34 ................................. AATGAAATGATGTCGCTTGTATCAACATCATATA 987131 33 81.8 0 ......................CA..CCA...G | ========== ====== ====== ====== ================================= =================================== ================== 20 33 98.9 34 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : AAGTTCTGGAACTACCTGAAAAATGTGGATTTCTGGCAGTGGCCGGAACAGCGGTGGCCCTGAAGGCGGGAAAGCTGGCTGCTGTAATGGAACGTCAGGGCAGAGTACTGCGTATTTGCGATGCCGAAGATATGAAGGAAGTGATGGCGGAATTTGTCCGTGCGTTCAAGCAGGGAGCCATATATCCGGAACAAAAGAGGCTTGTATTGAAAGAGTATCCGGCGGAGGCGGCAGAGGCTTTGCAGCATGCAGGATATATGCGGGAAATGAAGGATTATGTAATATATAAGTAGAGTTGGTTTCTGTGAGTTGGGAGCCCTTCAAACCAGGTGCGAATGCCAAGCTGACATGAAATGCCAGGGAGATTCGCACCTGAAAAACAGAGGAAAAGGCCGTGAAAGCGGGCTGGGTGAATGGACTGAATTGGTTGAACTGGGGAGAGAAGAGCATAATGCATAAAATGTTAGGGGGGATGTGGAGCAGTTTTGGATAATTTTGCT # Right flank : ATACCTGTAAGCCCCTAAATTGATGCAAAAGGAAAATTGCTCCCCACGTACCTAATGCATTGAAAGCAGCCATAATTATATATTGAAAATTCGCTAAACATCAGTTAAAAGAACATATTAACAGTATCCCGGTCAACAGGGAATCCGTTAAGCACATACCCCCCCCCACCCTCCGTAAAAAACATCCGCCCAAAAAACACCAACATAAACAAAGGAGTAACACATATATGATTGAAATAATCTATAGAGACAAACGCTTTCTTGTTAAGGGCAGCTTTTCCATAGGAATAGCAGGAAACTATGTAAATGAGGATTTTGGGGACGAGAATATCATGATTAACGATACGTTAGAGGAAATCATGAAAGAATTGAAGGATGAGGACTCCTTTTGGTACAAGCCGCTGTTTCCCTATCTTAAATCTGAGACAGCAGACAGTGGCGGAATAGCCAGAGGTCTTACCGCGTACTACAATCAAAAGGAAAAAGAAATCAGGGAGAAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 65819-66794 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVHZ01000002.1 Hungatella hathewayi strain AF31-1 AF31-1.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 65819 33 97.0 34 .............T................... TAAATTTGTGATACGGTTATCCAGGTTGCTTATG 65886 33 97.0 36 .............T................... ACTTCCGATAACCCCAACTATAAGGAGATGAAAAAC 65955 33 97.0 34 .............T................... CGATAACCCCAATTACAAGCAAGTATAGGATAGT 66022 33 97.0 33 .............T................... CCAGTGTCTTCCTACGGATTTCATCTCTGTTCC 66088 33 97.0 35 .............T................... CCGCAAACAGCACTTAAACGGGCACGGGCAAACGC 66156 33 97.0 34 .............T................... TATAGAATTGCAAGAGGCCGGTACCTTAAAGGTA 66223 33 100.0 34 ................................. ATTTGGTCGACATCTGCCTGCACTACGCCTGGTG 66290 33 100.0 34 ................................. CGGAATTAACCCCGCAGCACCATTACTGCTGATA 66357 33 100.0 34 ................................. GTCCATATCACGGTAGCCGACAATCTGGCGCCGC 66424 33 100.0 35 ................................. GACTCCCGACAGTGCAAGGCGCAAAACTCCGCGAT 66492 33 100.0 35 ................................. CCTACGCCTTGGGCGCCGGACAGTATCAGCATACA 66560 33 97.0 34 .............T................... AAAGGGCTGTTCCTGAATGCGGATTCCAAACCTA 66627 33 100.0 34 ................................. TGTTTCAATGCAACCGCCAGACTGCTTGGAGTAC 66694 33 100.0 35 ................................. TCCTCTTGATTTTTGATGGCTGACCTGTGACCATA 66762 33 84.8 0 .........................C..TTCC. | ========== ====== ====== ====== ================================= ==================================== ================== 15 33 97.6 34 GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT # Left flank : ATGCTGATACTGATTACATATGATGTGAATACGGAAACCGCTGCAGGCAGGACCAGGCTGAGAAAGGTTGCAAAGCAATGCGTTAATTACGGCACCCGCGTCCAGAATTCTGTATTTGAATGTATTTTGGATAATACCCAGCTGATAAAGCTAAAAGCCATACTGACAGATATCATTGATGAGCAGACGGACAGCCTTAGATTTTACAACCTGGGAAATAAACACACTACAAAGGTTGAACATGTTGGGGTGAGTAAAGGGATTAAAGTGGAAGAGCCGCTGATATTCTGACCAGGCTGCGGGTGGTAAGGAGGTTTCAAATAGTTTGGTGCGAACCAGAAGCAAACATGAATTTACGGGGGGATTCGCACCGGAAAAACTGCACAATGAGAACGGTTTTGGATGTGTGCAGGGTAGGTTGGCGGTGATTTGAGAGGGTATGATGTGATTTGATTGTGGAAATGTGATGAAGAATTGTTGGTTTTTTGTGTAGTATTGCT # Right flank : TTTCTGGTCAGTCTCCGCCCTCACAGCGAAGTAAGCTGAGAATCCATCAAATTCAGGATTACGTTTAGTCAAAACATCATTCCCCTTTTTCTAAGAAAACAGTATAGTTTGAACCAGAAACATTAGCTATAACTAACAACACGCAGCAAAAAAGGTGGGCGAACACCCACCTTTGCCATAAAACTGTTATAGGGTATAAAGAACGCGGGCCTCCCTCACCCTTTCCATGCCCGGATCTCCCTAAGCCCCGGCACCAGCACTTTGGCGCTGGTTTCCAGAATGATCCTTCCTTTTTCAGCCGTGGCGCCTGACGGGTCTCCGCCGATTCCTATGGGTTTGCCGTCTGCTGTTTTCCAGTCCTCGGATACCCAGCCAATGGATACGTTTCCATAAGGCCTCAGTGCCTGATTGTCCTTAAATGCAGTCGGAATTCCTGCCTCTGAGGTATCTAACTTTACCAGAGAAGGGTCCACGGCCATGACCATGGAGGTTTCCATCTC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT # Alternate repeat : GTCTCCGTCCTCGTGGGCGGAGTGGGTTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 397265-396109 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVHZ01000006.1 Hungatella hathewayi strain AF31-1 AF31-1.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 397264 32 100.0 37 ................................ AAACTTTGCGTTTAAGCTGTCGCCTTCCATGGATTCC 397195 32 100.0 34 ................................ TGTATCCAGGTCAAGGAGGCACGTACTTGCAAAA 397129 32 100.0 33 ................................ ATCGTAAAACTGCTGTGGTTTATGGAAAGGGAA 397064 32 100.0 33 ................................ GTCAACAATTCCCAGATACGGGCGAAAACCATC 396999 32 100.0 35 ................................ TTAAGATAAAGATGCTGTCCGCATCATCGTCAATT 396932 32 100.0 33 ................................ AAAACCTATACCGAAGAACAGCGGATGGCCCCC 396867 32 100.0 34 ................................ AGATGTACCGGCTTTTCTGGTTCCTCCGTAGAAC 396801 32 96.9 34 A............................... GCTGTCAGACCAGCCAGATCTGTGAACTGTGCCA 396735 32 100.0 35 ................................ ATAATATGTACCACCCTTTCCCTTTTGTCTCTACG 396668 32 100.0 33 ................................ TTTTATGGCGTCCCAGGCTCCGGACCAATCACC 396603 32 100.0 34 ................................ TTCTCATAGTCTGCCATAATCGCTCCCGTCAGCC 396537 32 100.0 35 ................................ AAACTGATACCGTTTACGGTATGTCCTTCCCTCCC 396470 32 100.0 34 ................................ ATATTTGGAATATGGCCCAGCAGTATCCTTTAAG 396404 32 100.0 35 ................................ TTTGGCACTGGCATCTGCCTGACTGGCCTTTTCTG 396337 32 96.9 34 .................T.............. CTAAAAATAATTCCATGCGTTCAAGGGGCCGCTG 396271 32 100.0 34 ................................ ATTTTCATCCAGCGGATCCTGGAGGATGTAATCA 396205 32 96.9 33 ..A............................. CGAAATCATCTATCACCAAGACCTGTACAGTGG 396140 32 84.4 0 .....................TA.T.....GT | ========== ====== ====== ====== ================================ ===================================== ================== 18 32 98.6 34 GATCAGGCTCTCGCGAGCCTGCGGATTGAAAC # Left flank : GAAATGAGGTGATGGATTTGCTCGTACTGATAACCTATGACATTAATATTACTGAAGCCGCAGGGGCGCGACGTTTAAGGCGTGTAGCTAAGCAATGTGTAAATTACGGTACACGAGTGCAGAATTCTGTTTTTGAATGTCAAGTAGATGCAACGCAATACGCGAAGCTAAAGCATCTTCTGTTGAAGGAAATTGACGAAGAAAAGGACAGCTTGCGTTTTTACTCGCTGGGTAATCATTACAATGGTAAGGTTGAGCATTATGGCGTACGGCGTGGAATACAGGTGGATGAGCCCTTGATTTTATGAAAAAACGGAGAGAATATGTCTGGGTTTGGCCGTGCGAACCCTAAGTGAACATAAATTCTGTGGGAGGTTCGCACCTGGATTTTAGGGTGAGTTGGAGGATAGTTTGTATAAAGAGGTGAAAAATATTGTGATATTTGGTTGATTGCAATAGAAATGCAATGTGTAAATGCTTTGAATTTGTGAATGTTTGAT # Right flank : TGCAGTATTGAAATTTACACAGAGTCGGCCTGATGTATGAGTCAATTTTCCTAAAATTTAAGATAGTTTAAAATTAAAGTTCAGGAAGGTAAAGTGTAAAGTAATTCACTACAATCAATAAATGTAAACGCTCAATAGCCAGTACCTTGTCCACAACTGAATCCCATGGAATAATTACTCTATAGTTTAAAGTATAAAAAAGTACAGTTTACAAGGGACTACACAGGGTAACGGTCTGACGGGTAGTATTCTGCCCGTCAGATTTTCCATGTAATGTTTAAGCTGTCGCTTGTGGCGGCTATGGTGGTAATCATCAAATCCACCACCCGCCGCTTGTCGTCAAAGGATACGCTGTCCCAAGTGTCGAGATAGCCGGAAATCTGGCTGACCTGTTCCGGGCTGATGGCTTCCACAGTCAAGTCCGCTATCCGCTTCACAAGTTCCTGCTTGCGCCCGTCCAGTTCCGCTATCTTCACATTCACATAGGAGAGCAGGACGTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCAGGCTCTCGCGAGCCTGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA //