Array 1 19722-20216 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKZA01000024.1 Gordonibacter urolithinfaciens strain BIOML-A1 scaffold24_size39389, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19722 36 100.0 29 .................................... TGGCCAAGAATTCGGGGTGCTGGGTCGCC 19787 36 100.0 29 .................................... TGATAGAGGACGGCTACGGCGGGGCGGCG 19852 36 100.0 30 .................................... GCTTCGGTGATGGGCATGATGACACAAGGA 19918 36 100.0 29 .................................... ATCCAGGTTGCGGAAGTTGCGGAGGTTGC 19983 36 100.0 30 .................................... TTTTTATGCCCAAAGGAGGTGGTTTCGCCG 20049 36 100.0 30 .................................... AGGCGGCTGATGCGCTCGCTGCATTCGCTG 20115 36 75.0 29 .....A.T..G.....G...C.....T..T...GG. TAATCTTGGGCGCGTAGCCTTCGGTAGCC 20180 36 75.0 0 ..........G...G.TGG.G.......G.A....A | T [20213] ========== ====== ====== ====== ==================================== ============================== ================== 8 36 93.8 30 GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAAAC # Left flank : CGCTTATCGGCGAGGTGATTGAGCGTTTGGAGGACATGGTTTTGTCCGAGGACGAGGTGCGCCAGGAAATCGAGGCGGCGGGCTTGGCTTTGTCGAACCGGGTGGCATCGCTCGGCCTGCGGCTTCAGTCGGACTACGCTTTTGAAGTACAATGGGAAATGCGGAAATACCTGAAGGCCTTCGATTTCGGCGTCGAGATCGATCCTTCCGACAAGCTCCTTGACAACTTGATAAAGTTCTTGAAGTTTGCGTCGGACGCTGCGTTCGGAAAGCAGTTGGTTTTCGTGAATTTGAAAAATTTTCTGACCGGGGAAGAGGTCGAAGAGTTCTATCGGCAAGCGATTTTTTCGAAGTTGCACGTGCTGCTGCTTGAGAACGCGCCCGATGACGCAACGTATGAGATTGAGAGGAAAATGCGCATTGACGTGCATTTTCTGCAATCATGAAAAGCTATGCCAGCCGGTTGTCCGTTCTTCTGCAGAAAGAATTTTGCCCCAACG # Right flank : ACGAATAGGATGACCAACCGGAGGGCATCGCTTTAAGATACAGGGGTGGGAGGGTGTGAGGTTGGATGCGTCTTCCGTCGTCGGTTAACAATTGCCGGTGGTTTTCAGGGCGATTGACTGTACCATAATAGGGATAGATAGTTTATACTCGCACGTAGGGATTGCAAGCGGACCTGTTGCGAGGAGGAACCATGGCCGTCAACCGTCAGAAGCTCAAGCTGCTGTATCTCATGCGGATGCTCGAGGAGGAGACCGACGCCGAGCAGGGCCTCACGATGGCGCAGATCCTCGAGCGGCTGGAGGCACAGGGCATCACGGCCGAGCGCAAAGGCATCTACCGCGATATCGAGGCGCTGCGCGAGTTCGGCTTGGACGTGCGCACCTATCAGCGCGCGCCGGTGGAGTACGCGCTGGAGCGGCGCGACTTCGCCTTCCATGAGCTGTTGCTGCTGGTGGACGCCGTGCAGAGCTCGCGCTTCCTCACGCAGCGCAAAAGCGAC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 48552-47927 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKZA01000003.1 Gordonibacter urolithinfaciens strain BIOML-A1 scaffold3_size87659, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 48551 31 100.0 34 ............................... GATACGCTTGCCGACGCAGCCGAGGCTCGCCGCG 48486 31 100.0 34 ............................... CGCTGAACTGCGCCAGATCGAGCGTGCATTAAAG 48421 31 100.0 36 ............................... TACAACGTGACGGCGGAGCGCCCGAGCGACGAGAAC 48354 31 100.0 34 ............................... GCTACGAAGCAGCAAGCGAGGGCCTTAAAGACCT 48289 31 100.0 33 ............................... AAGGATCGGCCCAGAAAATAGCGGAGTGCATCA 48225 31 100.0 37 ............................... CAGGGTGATGAGCTGCGTGACGCCCTGGTTCAGGCTC 48157 31 100.0 36 ............................... TGGAAACAATCTAATCAAGGTTGGGAGGAGAAAATG 48090 31 100.0 36 ............................... GTCGATTCGGACGGTGAGGCCGTTGAGGGCACCATG 48023 30 77.4 35 ......T....A-....G.AT..A....... GAGACATCTTATATTTGCGTGGAGCTGGACGAGAA 47958 31 77.4 0 ....C.....TATT........C...A.... | C [47949] ========== ====== ====== ====== =============================== ===================================== ================== 10 31 95.5 35 GTCGAGCCCTCGCGGGCTCGCGGGTTGAAAC # Left flank : GTTCATTTGGAGGTAGCGATGTACGTGCTGGTGACATACGATGTGGAAACCGCGAGCCCGCAGGGAACCTGCCGGTTGCGTCGGGTTGCGAAGATCTGCGTGAAGTACGGCCAGCGCGTGCAGAACTCGGTGTTCGAGTGCTCGCTCGATCCGGCGCAGTTCGAGACAATGAAGAGCGAGCTGATGAAGGCGGCCGACCTGACGCGTGACAGCCTACGGTTCTACAATCTCGGGAAGAACTGGAAGCGGAAAGTCGAGCATGTGGGGGCGAAGGAGGCTTACGACCCGGAAGGGTTCCTGTGCGTGTGAGAGGAAATGCGCACCTTGACAATGTAGAAGCTCTATTGCGTGCTGCGCGAACCCCAAGCGATGGCGCGCCATTCGGGAGGTTCGCGCAGGTTTTAGGCTTCACAAGCCCGCTGATAGCTGTTCATGGGGCAGACTGATTGTCTAATATGAATATAATAATCAGAATATGCGTATATATGCATATTCTGACA # Right flank : GAGCACTCCCGCAGCGATTTCTTGCAGAGCTGGTTGATCATGGCGGGCTCCTAAGTGAAAACGGCGCCGCATGCGTCGATGGACTGGACGGGTTATTTCCCTCCTAAAACGATGCGGCTGTCGAGGCGCGCCCGCCCGACTCCGCGCACATGCTATGCCGCACCCCTCGACGGGCGGTAGCGGTGAGCGGCGAGCCGGCTGGTGCGGTCCCGGCTACCTGCAAGGAGGCTCGACGAAGGTTGGAGCTTGCGGCGATCTCCAAGCAGTTGGTCTATAATTCTCGTTCGTAGAAAAACGGGAGAAGGGGATCCATGGCGTCGGAGAAGCAGCAGGCAGGGCGCGCCTTAAGGCGGTTGGCGCGGAAGAACCCGCTTGCCGCCCTCGCCATTGCGGCCGTGCTCGTGATCGGTGCCGCGCTTGGATGGTTCGGCGCTGCGGGCGGCGGGGTCGCGGAGGATGCCGCGCCGGGCCGAGACGGCCAAGCAACTATCGCCCCCGTA # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGCCCTCGCGGGCTCGCGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.50,-8.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 2 58523-58015 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKZA01000003.1 Gordonibacter urolithinfaciens strain BIOML-A1 scaffold3_size87659, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 58522 33 100.0 35 ................................. TCTCGCGGGTGTGGAATCAGGTTGCAGAAGAGACC 58454 33 100.0 36 ................................. CACACTTCCGTGTACGGCACGACGCGCTCCATCAGC 58385 33 100.0 34 ................................. GGGTACTCGGCGATGACCCTCTCGTGCGTTCGCT 58318 33 100.0 35 ................................. TCCAAGAGGCGCGGCCTCCAACGGGAGGGGAGCGG 58250 33 100.0 33 ................................. TCGAGCACGCCCAAACGAGCGATTGAAGCCATA 58184 33 100.0 35 ................................. AAGGTCTCAAAAAGGCTCACACGAGCTCTTCTAAC 58116 33 100.0 37 ................................. TGCCCTTAGTCCAGCAGCTCGGGTCGCTCATGCAGGG 58046 32 84.8 0 ..........ATA-..................T | ========== ====== ====== ====== ================================= ===================================== ================== 8 33 98.1 35 GTCGCGCCCCTCGCGGGGCGCGTGGGTTGAAAC # Left flank : GATTGGCGGCCGTGCCCGGCCGTCGCAGCCCGATCCCGCTCCTTTCCGCAAACGAGGCCCGCCTTCATGTTGACCGCCCGCCTGCCGCCGCCTGCGAGCGCAAACCTTCGGAAACGCCGTGGAAGTGCAACTAGGAAGTGATGTTGAGTGCAGTATGGCCGGCGCGGCGCGGTGGCGCCATGTCCAAAAGGGCGCAGGGGGATAGGATTGGGAATTCCGTGCTGATAGGGTAAGCGGTGGGCAGGAGAGGCTTCCTTTTGGGTGATGCGAACTCGTACGTTCTTGCTTGTTCTATAATGAGCTTGAGTGAATTCGAGGTTGACGATGAGTCTGGGTGCCCTCGATCCGCTAGTGCGCGAACCCTAAGCTATGGGGATTCACACGTGAGGTTCGCGCATGAATCGAGTCATTTCGGGTCGATGGTTGCTAGGAGGGTTCTGAGGCAGCTTGAAAATTGCATATTTCATTCAATTTTATTCAGAATTATGCATGAATTGACA # Right flank : GCCGCCGCGCTAGCTTCCGATAAAACGAGTGATAGGCCTCGGCCTCTGCGAAGCTACCTGATTTGTCACTGCTGCAGTTGCGAAAGGGGTGTGAATTGGGTGCGCACCGTCGCCGTATCGTGCTCTTAGCACCGGTTTCGACAGACATTTGCGCCCCCATGCTACAATGCGCTCATGATGCGCGAGAGCGACATATACGAGCTGCGGCTGTTCGATCGGATCCTGATCGTCTTTCGCATGTCGCGCGGCGAGTACGGCGATCTTTCAGTTGAGGTTGTCTCGGCAGACTCGTCGGCAAGCCGCCTTCTCCCGCTGTCGTTCGATGGAGAGACTACCGACGAGCGTCTCTTCGAATGGATTCGCCGACGGCGCATCCCGAAGAATCGCGCCTATGTTGACGAGATACTCAAGTCGTGCGGCATCGAGTCCGACGATGCGAAATCGATCATCGATGTGAGTAAGGGCCTTTCGCTCAACGATTCCTATTGGGTTGTTCCTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCTCGCGGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.10,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 64193-63162 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKZA01000003.1 Gordonibacter urolithinfaciens strain BIOML-A1 scaffold3_size87659, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 64192 32 100.0 36 ................................ ATCGACGAATGCACGGCCGACGCCAAGAAGGCCGTG 64124 32 100.0 33 ................................ ACGGCTGTTCCGTCTGCTATGAGCAGCGTTGGA 64059 32 100.0 34 ................................ CGGCCACGACCTTGCCGGTGGCGTCTACGACGGT 63993 32 100.0 37 ................................ AAGATGCCTCCAGAAATCATCAGGAGCGGAGGAACCG 63924 32 100.0 35 ................................ ATCATGCCGTCCCACGTGTACCCCATGTCTACGCA 63857 32 100.0 33 ................................ CTGCTCGAATACCTATTGGCCCACATCCCCGTC 63792 32 100.0 37 ................................ CTGGAAGCCGGACACCTCGCCACGGCGGAACCCCGTG 63723 32 96.9 35 ..G............................. TCGCAGCAGGGCGGGGGAGTGAGGTGCATGCGCTC 63656 32 100.0 35 ................................ GGCGTAGTCTGCGAAGCCTTGGCGTGACCGTAGAG 63589 32 100.0 34 ................................ GAGTTTGGACGCATTGACGCTCCCGTTGGCGAGC 63523 32 100.0 33 ................................ GAGTTCCAAGCCGGTTATATCAAGCTGTCCGAC 63458 32 93.8 34 ...................T...A........ GCGCTGGCTGGCGAGCCGGCGTGGGTCCTCTGCG 63392 32 100.0 33 ................................ CAACGACTACCACGGCCCGTACGTAACCGACAC 63327 32 100.0 36 ................................ TGCGAGCCGCCCAAGGCCCCGGGGCAGCTGGTCGCC 63259 32 100.0 34 ................................ CGCTGAAGGTCGCCTCGGGAAGCGGTTCGTCGTT 63193 32 90.6 0 ...........C.........C........T. | ========== ====== ====== ====== ================================ ===================================== ================== 16 32 98.8 35 GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAC # Left flank : GGTCCCTGCATCGGCTCGGTCGGGCTCATCCCTGACCCGCAGCGGCGCAACGTCGATGCCCTCATGTTGGGGTACTCCCTGGCGAAGCCCGCCTGGGGCCGGGGCTACATGACGGAGGCGTCGCGCGAGGTTATCCGCTACGGTTTCGAGGAGCTGGCCCTCGGCCTGATCTCCTGCACGCATTACCTGTTCAACGATCGCTCTCGACGCGTTATCGAGAAGTGCGGCTTCGAACGCGAGGGCATCATCCACGCCGCCGAGCCCGCCCCCGACGGCACCATGCAGGACCTGGAGACGTACTATCTGACGCGCGTGTCATGGGAGGAGGCCTCGCGCGAGAGCGCGCCGCTCTGCGCGAACCCGAAGCTCTGGCAGTCCACTCAAGAGGTTCGCGCAGAATGACACGTCCAGAGGGGTAGCTTGCTGGTTGCGCAAGGTGCTACGCATCTTGAAAAATGAATACTATAAGTGAAAAATGCACTATCCTGCATAAACTGCCA # Right flank : ATTCGAATCGTGCTCGCTAAATGGACGGCTAAACAACCCGAGAGGCATCCTCGTGCGAACTGGGTTGACGCCTCGCTCGCCGGTTCTTGGGCCGCATTGTCCCAGCTTGCCGCACTACCCGGCAGGCTCGCCTGTCTTGCCCGGCTTCCCCGGCTCGTCCGATCCCGCTGTTGCGTGCGTCTCGTTCGCCCCATACTTCTTTATCGTGCTCGCCATCATGTCAGAAGGGCGATACAGGAACGTGAAGCACTTCGGGCAGCTCACGGCGTTGTCGGGCACCGGCTCGCCGCATTCGGGGCAGCGGCCGTCGTCGATGCGCTCGCCGCTTCCGTCGGCCATGCATGCGCCGCACATCACGCAGGGGATGCACATGGGAAGCCTCCTTCCGCTTGCGGTTTCGCTATCTCCCCCGGCATGCCACCGATCTCGCTCGCGGCCTTCTCGACCTCCTGCCGTATGAGCGCGGCCAGGGAGTCATGCACCACGTTCTCGAAGGGGAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //