Array 1 324808-325978 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LYCK01000013.1 Haemophilus haemolyticus strain CCUG 12834 contig_4, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
    324808	    32	 100.0	    35	................................	TCTACAACAGGATTCGCTATTGCCGCCGCAGCATT  	
    324875	    32	 100.0	    34	................................	CACCTAAAAATGTTTCCAACACCATAAAATTTAG   	
    324941	    32	 100.0	    35	................................	GGTATGCCCTAACGAATAAAAGAAATCAGGCAATA  	
    325008	    32	 100.0	    34	................................	TTTTGGTTATGAAACACCTGACGGAATTAATAAG   	
    325074	    32	 100.0	    34	................................	GATTTAGCCCTAGAAACGACTTGTCCGCAATGTA   	
    325140	    32	 100.0	    34	................................	CATTAGATGCTGGCAATCCAGTAGCCGGATTAAT   	
    325206	    32	 100.0	    37	................................	ATCATAGGGATGATTTTGATCTCGATATTCGGGGGCG	
    325275	    32	 100.0	    35	................................	TGAGGAACGCAATTTAGACGACAGCCAAAAACGAG  	
    325342	    32	 100.0	    35	................................	TCCAATAAAGGCGGAGGAAGTGCGGGTGCAAGCCT  	
    325409	    32	 100.0	    34	................................	ATCGGATTAAGTTTTTTGCCATAACTTATGTCTC   	
    325475	    32	 100.0	    35	................................	CCGATGTGTGAATGATAAAAAATAAAAATTCGTTT  	
    325542	    32	 100.0	    34	................................	ATCTAATCGTTGCGCAAGTGAGCTGTGAGATAAG   	
    325608	    32	 100.0	    35	................................	AGAAAAGTCAGCGTAAAATCGCAATCTTCCGAAAA  	
    325675	    32	 100.0	    35	................................	ATGATCTAAAATGGCGAGAAGTGGAAAGAATAGAC  	
    325742	    32	 100.0	    37	................................	AGCTTGTTTGATGATGACACCAATCGAGCTGTTGCAG	
    325811	    32	 100.0	    35	................................	GATGTCTGGCAAGAATACGGCACATTTTTTCGTAT  	
    325878	    32	  81.2	    37	......A...T..G.T.....A..A.......	AGCTCATACTTTCGCATACGTTGGTTGGCAAGCTCGA	
    325947	    32	  78.1	     0	......AG..T..G.TA.A.............	|                                    	
==========	======	======	======	================================	=====================================	==================
        18	    32	  97.7	    35	GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC	                                     	       

# Left flank :   TTGATGAGATAAACTATGTTAATTCTGATTACTTACGACATTTCTTTTGACGATCCAAACGGGCAAGCGCGATTGCGCCGCATCGCAAAACATTGCTTAGATTACGGGGTTCGGGCACAATATTCGGTATTTGAATGCGATGTCACGCCTGATCAATGGGTTATGTTGAAAAACAAACTGTTGGAAACCTACGACTCTACATGTGACAGCCTGCGTTTTTACCATTTAGGAAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCGGCAGTGGATGTATTTAAAGATGTGCTTGTCATTTAGTTCGCTAACCTGGTGTTCTCATTAAAACCCTGATGGGATAGCGATCCTTATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGACGATATGGCCGTTATACTTACTAAACTCCTTATCATAAAATCAGTTAGCGAAATACGGTGTTTAATACGCTGATTTTTCTTGCTTTTTTATGTAGGGG
# Right flank :  CGCTCACGCATTAAGCCAAGGGCAACCCTTACAACGCAGCTGTTTTAGCCAGCGTGCGTTAAAATAGTTCTGTTTTTTATTATTCAAATGTTATTTTTTTGTTAAATATATTTTACTTGAGTATAATGCTCAACATTATTCCTCACGGAAGAGAATCCGTAGAATAATGAGATTAATCGTAAATATAAGGAATAAAAATGGATTTCAATAGAATTATCGCTCACATGAATGATCATCACCAAGATGATATGGCTGCCCTTTGTAAAAAATTTGGTGGTGTAAATGAAATTACGGATGTGACATTAGTTAATGTAGATTTTGGTGGTTTAGATTTTAAATATAATGATGGCAAAACATTACGCGTAGAATTTCCGCAACAAGCTGACGAAGGTTCAATTAAACAAGCGATCATCAATCTTTGTGTAGAAAATAAACCAGTTGCAAATTACGATCGTATCAAAGCTAAAATTGATGAATTTCGTCAAGAGTTTAAAAGCTGT

# Questionable array : NO	 Score: 6.15
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-4.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-13] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.55,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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