Array 1 9233-7344 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCPY01000034.1 Tetragenococcus solitarius NBRC 100494, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 9232 32 100.0 34 ................................ GAAAGAAGTTGATTACAAAAATGTTTAAACAACC 9166 32 100.0 33 ................................ TAATCTCGTCACTGCCTACCTCCCAACACTTCA 9101 32 100.0 35 ................................ AGTTCCGCGAGCAAGATGGTCAACCAACCAACTTA 9034 32 100.0 34 ................................ GGTCTGAATTTGTCGTGTGGATTCCCAAGCTGTC 8968 32 100.0 34 ................................ AATATGATTAACTGGGAAGTACAAACTTACCGTG 8902 32 100.0 36 ................................ TACTACTGCACGACTTGCTTTACCTGTGGCGCTGTC 8834 32 100.0 34 ................................ ACAAAGAAACAAAAACAAGCATCAGAAAGATTAT 8768 32 100.0 34 ................................ TATCGTTTATAAAAGATAATATTTTCCACATCCC 8702 32 100.0 33 ................................ TTTATTTTGTGTTTTCTCGTCGCCATTTCTCGG 8637 32 100.0 34 ................................ GTGGAATTACGACCACTCTAAAAGGATCATCTTT 8571 32 100.0 34 ................................ GGCTTTGCTAATTGGGGTTAGCAGAGCCTTTTGT 8505 32 100.0 36 ................................ TAATAAAGAACGGTTGTACAGAATATGGAAGAATAT 8437 32 100.0 33 ................................ GATATAAAGCAACTAATCCAGCTGTAACACCAA 8372 32 100.0 35 ................................ TTAAGTGAGCAGGGCTTTTTTACATAATTTTAATA 8305 32 100.0 34 ................................ TTGCTGTTCTTTCCACGCTTGATAATCCGATTCA 8239 32 100.0 34 ................................ AAATAATAGAGATGCATGAGTATGTCTAAGACCA 8173 32 100.0 35 ................................ ATAATGATCTCTCGCTAGTATCTCTTTTCTTTTGC 8106 32 100.0 34 ................................ AAATTTTAGGGAATGGGCACTTTCTAGCGGTTAT 8040 32 100.0 35 ................................ CTTAATTGCTTTACCGACGTTTTTAACAAAATCAC 7973 32 100.0 34 ................................ TGCTAAAAATTGTTGAAATAACTGTTCTCGTTTT 7907 32 100.0 35 ................................ ATCCGTATGGATCCATAATTTTCGACATCATGGAC 7840 32 100.0 35 ................................ ATCTTTGTGATTGATATACGGAAGGTGTTTTTTGT 7773 32 100.0 35 ................................ ATAAAATTCAACCATTGAAGGCGCCGCATTTCGTG 7706 32 100.0 34 ................................ TAACCGATTGGCAAGTCGGTTGAAAGAAATTGAC 7640 32 100.0 34 ................................ GATGGATGATGTACTTAATACGTATAATAAAACT 7574 32 100.0 34 ................................ TTTTTCATCATCTGCGCTAGATTCAGCACTTTCG 7508 32 100.0 35 ................................ TTCTGTCCACCGTTTCATTACCTACCGCCCTCACT 7441 32 100.0 34 ................................ ACCAGTTTCTAAGAGAAGAAACAGATCTAACCTA 7375 32 93.8 0 .........................A.T.... | ========== ====== ====== ====== ================================ ==================================== ================== 29 32 99.8 34 GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Left flank : GGACGCTATTGTCGTAGGTTTCGGAATTTCTGATAACGCACTATTCGATGTTATTTTAGGAAGCCACGAGCCCAAAGGATTATTGCCAATGCAGTTTCCTAAAGATATGAATACTGTAGAAGAACAATTTGAGGATGTTCCAAAAGATATGGTACCTTATAAGGATAGTGAAGGAAACAAATACGATTATGGTTATGGCTTAGACTATGACGGTGTCATTAAAGACAAAAGAACAGAGGAATATGTTAAGTAATGATTACTTAATGGAGTGTCTATATAAGCTTTATGGCATGATATAAATAAGAAATACGACTAATCATATTTTAGATAAAGTTATTTAGTCGCTAGAAGTTAAGTTTTGGCGCGAATCGACGTTACACATAAATGTTTCGGTTGGTTCGCGCTCAGATAATCTTATTTTATGAACATTAGCCCTTTTTTAACGTTTGTTAATTAATTTTTTATCTAGAATACCAGCGTTAAACCGCGTATTATCCGCG # Right flank : AGCAAGGTTATGGTTCTTAATAAATATGGTTAGAGCTTTTATAACAGTAGTAATGCAAGAGTATGTATAAGAGACAGATTTGAAGTTTAAGTTGATTATTATATAGGAGATAGGAGAAGATATTTTGTTGGAAAAAAGACACCAAACATTGATAGAAAAAAGGACGCTTACGCAGAAAAAACGCCGGAATGCGTGCAGAAGAAAAAACCAATAAAAAAGAGTGGGGAAAAATGTTCAATACTAATTACGGTAGTTTGAATAAATTATATGGATCAGATATAGACAAACTGTAGGTTGTTCAATAGGAAAACCTGGCTTCGTAAAAATTGCTTGTTCCCCAGTTCATACCTCTCTTTGCTTTAATTATTACATGATCACTTCATCACAATGTTTTGCTGAGAACATAATTTCTGGGCAATTTAAAAATTCTAAAAGAGAACGCATATATATGAAGTTGTAATATCCAAAGTCAGCTGATTCATGTTATAACGGCTTAGCAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 74633-72659 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCPY01000008.1 Tetragenococcus solitarius NBRC 100494, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 74632 32 100.0 35 ................................ AAACGCAGTACGAATATCTTGGTCGTTTGAATCTT 74565 32 100.0 35 ................................ ATCTTTTCTCTTTTCTTTGAACGCTTCTCTTTTCA 74498 32 100.0 36 ................................ ATACAGAGAAAAGGAAAAAGGAAGAATTGCTTTTAA 74430 32 100.0 34 ................................ TGCTAGAGTCAACTTTAATCTGCAAGCAATCCGT 74364 32 100.0 36 ................................ TGCATCTGTTACACCAAAAAAAGGGTAGCCCCAACC 74296 32 100.0 38 ................................ TCAGGCAGCTTTTGGTCGTACTTTTACTGTGCCTGTAC 74226 32 100.0 35 ................................ ACTCGAGGCATGGTGAACTCGTGCGCCTCATGCCA 74159 32 100.0 34 ................................ GCGTTCTTTCTCGTATGCCTCATCACGGATTCTC 74093 32 100.0 34 ................................ ATTTAAACAATCCTCGATACTCAGTCCACATTGT 74027 32 100.0 36 ................................ TTTGTTATAAAAATATAATGCAAACCTAAAGCTACC 73959 32 100.0 34 ................................ ATATGCGTGTAACTCCTTTAAGCTTAAAAGGCAA 73893 32 100.0 36 ................................ ATCTATATAAGGAGCGTTGGCATAATCGTAAGCTTC 73825 32 100.0 34 ................................ AATGGAGTCAGAAACTTCTGCATCAGTTGTATTT 73759 32 100.0 35 ................................ GATACATCCCTTACCGAGTCTGTATCTGGGTCAAT 73692 32 100.0 35 ................................ AATATCTTCGAGCTTCCAACCGTTTTGCATTAATT 73625 32 100.0 37 ................................ ATTGTATATTCGGAGCCATTTCTCACTACGACGATGT 73556 32 100.0 34 ................................ GGGAAATGGTGTTAGAGGGTTATGCAGTATTGTT 73490 32 100.0 36 ................................ TAAACCTGAAACAATTGCAGGCACACGTACGGTTAA 73422 32 100.0 35 ................................ TTGTACAATAGTTCTTGGATCTGCATTCCTGTTTT 73355 32 100.0 34 ................................ TGAAATCAAACTGTCTAAAGGAACTGAATCCACA 73289 32 100.0 34 ................................ TTCACCCACTATCTTGATATAGCCGTCAGTTTTA 73223 32 100.0 34 ................................ AGGATTGGAAAGTGGAACATATGTAACGAATCTG 73157 32 100.0 34 ................................ CGCTTTTCTTCCAGGTTCTTCCTAAACTCTTTTG 73091 32 100.0 36 ................................ GCACTCTTTTTTTATTTCATTGACTAAACTTTTAAT 73023 32 100.0 34 ................................ TACTTTAAGTGATTTCAGCTTAAACGAAGAGTGG 72957 32 100.0 34 ................................ ATGGCAAAAGCACGCAATACGATGCTTTGGCTTA 72891 32 100.0 35 ................................ TTTAACATCTTCTGCAGTTGTCGCGTCTAGATTTT 72824 32 96.9 36 ...................T............ TTTTCCTCCTATTGTTTTAGTCCTAAAGCTTTCGCA 72756 32 96.9 34 ....................A........... CCGGTTCCAGTGATTAGCAACTTTTCCTTCTTCA 72690 32 71.9 0 ..T..A.......C....A..CTAC......A | ========== ====== ====== ====== ================================ ====================================== ================== 30 32 98.9 35 GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Left flank : | # Right flank : GAATACTAATTTTCAGAAGAAGGAATGTTAACTAAAAAGAGTTTGCATGTAAAAATGTATATAGTATATTTGAAGTAAAGAAATTATGAAAGGGTTAACAAGCTCTCAATGACTTCTTCGTTTGATAGAAAATTATTGTGGTGTCTTGGTGTATAAAAAGTAATTCTTAGTTTATGTTCTAACGTTATATGATGTTTTAACAATTTAAAGGAGATGTTGACTTAATGGATATAACAAAAGCAGTAAAAGAAATTTTGAGGAAAAATCAAAGAGTAATATCTAGTATTTATTTTGTTGCCTGTGGTGGTTCTTTAGTGGATATGTATGTGGCGGATTACTTTATAAAAGCAGAGTCAGCGAAAACTTTTACCGGCTTATACACAGCCAATGAATTCTGTCATGTTCCTCCAAAAGCCTTAGGAGAACAATCGGTGGTTGTCCTTTGTTCTCATGGCGGAAATACCAAAGAAACAGTAGAAGCTGGTCGTCTAGCTAAACAG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 698-1671 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCPY01000078.1 Tetragenococcus solitarius NBRC 100494, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 698 32 100.0 36 ................................ GGTAGGTACAACAATGCGCATACGACTGTCAATTGT 766 32 100.0 36 ................................ CGCATCAAGCATTCGATGATTACGCATGTGCTACCT 834 32 100.0 35 ................................ TGGTGTGCCTGTCGATGGTACAACAGACTTGATGA 901 32 100.0 35 ................................ AAGGAGGTGTTGTAGTTTATTAAATAACATACATA 968 32 100.0 34 ................................ TGTTGGTGGAAAACTTAGCAATACATTTAAATCA 1034 32 100.0 38 ................................ TGTTTTTGCCGGCGATCCTAAGCTACTCAAACACGTAG 1104 32 100.0 35 ................................ CAGTGATTGAAATAAAAGCAGGGTTCGTACACAAA 1171 32 100.0 35 ................................ CCGAACCCGCTGGGCTTACAATTAATGCGGATTTA 1238 32 100.0 34 ................................ ATCATTTACAATGACTAATCGTCCTACAATAGGT 1304 32 100.0 36 ................................ ATTAGAAACCTTGATACCCATTGGATTTTCAATTGC 1372 32 100.0 35 ................................ TCTACTGCCTCTACGGCAATTCGTGCAGATTTTTC 1439 32 100.0 36 ................................ GTCTATACTGTAGCTAGCTTCATCTGCCTTGCTTTG 1507 32 100.0 34 ................................ CATCCACATAGTAATCACTCCTATTATTTGTTAT 1573 32 100.0 35 ................................ CTTCAGTGTCTGTACGAGCATCGGTTACTTCATTT 1640 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 15 32 100.0 35 GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Left flank : AAGCAATTCGCGATGATTTACCCAGTTACCCACCTTTTATGACCTAAGGAGGTATGCCTATGATGGTTTTAGTTACTTATGATGTCAATACGGAAACGAAACAAGGAAGAAAACGTTTGAGACATGTAGCTAATTTATGCGTTGATTATGGACAACGGGTGCAAAATTCTGTTTTTGAATGTTCAGTTGTTCCAGCAGAATTTGTCGAACTAAAAGGAAAATTAGCCAATATTATTAACCCAGAGCTTGATAGTATTCGTTTTTATTTGTTAGGAAAAAATTGGCAGAACAGAGTAGAACAAATCGGAAATAATGATAGTTACGATCCAGATAAAGATGTTTTATTGTTGTAAATTAATTTTGTGCGAGTCGATGTCACACATAAATTACTAAGCTGACTCGCGCGAAATTGTTGTTATTTTGTAGAAATGAGCTCTATTTTTACTGTTTATTAATAAATTTTTTCGTTTAAAACGGAGAAAAGCCGCATGATTTCCGCG # Right flank : TCCAAAAAGCCAGGCGGTTTTTTTAAGCCCTGGCAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTTCATGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //