Array 1 103213-103547 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIFN01000006.1 Halomonas sp. B1.N12 6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 103213 29 93.1 33 .........A......T............ CACGGCATGTCTCCTGCTGTAGCTCTACGTGCC 103275 29 100.0 32 ............................. CGTAACTAATGATATCCATATGGGCAGCCTGA 103336 29 100.0 32 ............................. TAGCTAAAAGCATTCTGGATGGCCGCAGTGTC 103397 29 100.0 32 ............................. CCTAATATCGTGCTGCCTGCCCGCATGGAGGG 103458 29 93.1 32 ...........................TC AAGTCCTGAACGTCCTAATGGCTCATGGAGAT 103519 29 79.3 0 A......T.A.T....T...........A | ========== ====== ====== ====== ============================= ================================= ================== 6 29 94.2 32 CCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : CTAGCTGATTGCCCGAAAAAGGCTGATCGGTAAATACGTCCAGCAGGTAATATTCAGCGGTTTTCATACTGTTCTCCTTCTCATAATGTGTGCTTCCAAAAGGATTTACGGCCCTCCTTTTGTGCCTGGGCACGGGTGATGCCAATATCTCTTAGCAGCCGGTCATCATGTGTCAGCAACTGGCGGCGGCTACGTTCGCGGTGGGCGCATATTTGAGAGCGTAGCTGAGCCAATGAATCATCCAATACGCACTACTAACGAGTGCCCTCTACGAGTAACCCGCCGTTGGCGAATGTATATGCCATAAGAGAGGTCGCTCTTCATAAAAACGATGCATACTTATACCTTTGACCGAGGCTTGGTGCGATTTTTATAGATTCCTGCAACGTTCTGATTTTACTGTTCTTTAAGAATATCTTTCTGATCAAAAATTGACCTAAATCGCTGGTGGATTTTCTACTGCCTATTTTTATCTTGCAGAACAGTCATCTACAATTAGA # Right flank : AAACTCAAGATAAGACGGAAATCACTGAAAATGATGGGTTTTGATGCTGATTGAAACGCTGATCGCGGCGTATGCTATACCTGTATATCAAATCTCCAGGAGAGACCATCATGTTGGCAATACGACTGCCCAGCGACATCGAAGCGCGCCTGGAGGCCTTGGCCAAGGCCTCCGGCCGCACCAAGACCTATTACGCCCGTGAAGCTATTCTCAAGCACCTCGATGACCTTGAGGACGTTTACCTGGCCGAGCAGACCCTGGAGCGTCTGCGTCGTGGCGAGGAAACCACGCACTCCCTGGATGACGTGGAGCGTGATCTTGGGCTGGAAAATTGAGCTGACGGGGGCCGCCCACAAGCAGCTGAAGAAGTTGGGTCATGTTGAGGCCAAGCGCATCCGTGGCTACCTGCGCGAGCGGGTACAGCCGCTTGAGGATCCGCGACAGCTCGCCGAGCAGGGCGTGACCCAGAGCATGTCACGCAAGGGGAATTGTCTAGATAA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 163304-157451 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIFN01000005.1 Halomonas sp. B1.N12 5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 163303 28 100.0 32 ............................ ATCGCCGCGCTGCTTGCGTTAACAAAATACTG 163243 28 100.0 32 ............................ ACTACGACATAAACGATAACCCTGCACAGGTT 163183 28 100.0 32 ............................ ACTTGATGCACGCGCCGGCGGCGCTGGTCGAG 163123 28 100.0 32 ............................ ATGAAGACATGGACACCCAGCGCAGCTACCGG 163063 28 100.0 32 ............................ GCCCTCATTGGCTGCAAAAGGAAAACCGAAAT 163003 28 100.0 32 ............................ ATATAGCGCACATAATGCTTTTCACGAAGCGT 162943 28 100.0 32 ............................ TAGCGTAATTCCCGACCCGATATGGCAGTCAA 162883 28 100.0 32 ............................ TCGCCGAACGTAAGGCGCGGTTAGTCGCCCTG 162823 28 100.0 32 ............................ GAGTATCACCGCTGCGCAACCCGTCATAACGG 162763 28 100.0 32 ............................ GCACTGCACGGCCAACAGCATGGCCACATGCT 162703 28 100.0 32 ............................ AGCGCAGGGAGCTTGGATTCCCGGTCGCCTAC 162643 28 100.0 32 ............................ GCTTCGATGGGGCTGGCGCCCAGCATATCGTT 162583 28 100.0 32 ............................ ATTAAGCACCATCACTGGCCGAGGCACCCAGC 162523 28 100.0 33 ............................ CATAAGCATTAAGGGCTTCAGTCAACGCTTCAT 162462 28 100.0 32 ............................ AGCACACGGTCGCCTTGCTCAAACGCGGCGCC 162402 28 100.0 32 ............................ TGGAAGTGGGTCTGGATCGGCTGCCTGCCCCA 162342 28 100.0 32 ............................ GCCAATCAAAGCAGGGGCATCCACGCGACTCA 162282 28 100.0 32 ............................ AATGTTTTTGCTCAGATTGGAACCGGCAAAGC 162222 28 100.0 32 ............................ TCAGTGCTGCCCGGCAAGATCTCGACCGTGCT 162162 28 100.0 32 ............................ AGAGTTGATCGACTGCTCACGCGCCCGCTGAC 162102 28 100.0 32 ............................ AAACCAATCTTCATAAAAGTTACCGTTCACAG 162042 28 100.0 32 ............................ TCGACCCACTTGAACGCCGGGAAGCTCGACAG 161982 28 100.0 32 ............................ GTCAAAAGGAGAGCTGGACGTCATATTCAACG 161922 28 100.0 32 ............................ ATTCATGTACTGGCTGACAGCGCTTTGCCCAG 161862 28 100.0 32 ............................ TTGTTGATGGCTCAGGCATGAGCAAGAAGCGC 161802 28 100.0 32 ............................ ATCTGGGGCGCGAAGTACGCGACGCCCTAGCC 161742 28 100.0 32 ............................ GTAAAGAAGCGTTCAGCATCGCCCGCAAAGCA 161682 28 100.0 32 ............................ TGCTCGGCGGGGCGCTCGAACGTGTCGCCTGG 161622 28 100.0 32 ............................ CGAGAGCGTGCTTCAAAAGCTCAAGCGCCCGG 161562 28 100.0 32 ............................ AGCTTCCGCAGTGGACCGCACCAGATCCGCGA 161502 28 100.0 32 ............................ GGTGAGCGTGGGTGTCGCCGTAACGCCGGTTG 161442 28 100.0 32 ............................ AGATGATATTAAACATCGGTCGCGCTAACTCG 161382 28 100.0 32 ............................ AGATGATATTAAACATCGGTCGCGCTAACTCG 161322 28 100.0 32 ............................ GAACGAAAACCGTATTCGATGAGATGTTCCTC 161262 28 100.0 32 ............................ GACACGTGGAATCCGCAATACCACGCGCTTTT 161202 28 100.0 32 ............................ ATCGGCGTTGCTAACGCGATGAGTGACGAAAA 161142 28 100.0 32 ............................ CACGCTCGACGAACGCCGCATGGAGTACCGGG 161082 28 100.0 32 ............................ CATTCGTCAGATCGACGAGCGATGGCAGGTGA 161022 28 100.0 32 ............................ TGATTTTCGGCGGCAACGTCAGCAGCATCACT 160962 28 100.0 32 ............................ TCTGCAGAGCCGTCCAGAGCGGAATTGAATAC 160902 28 100.0 32 ............................ ATGCCGTCTATCGGGTCGATCACCTCTAACGT 160842 28 100.0 32 ............................ AAACCACTCCCCAGTCATCAACGGTACGCGTC 160782 28 100.0 32 ............................ AAACTCATCATCTTCAATGCGGCTATAGTCAC 160722 28 100.0 32 ............................ ATTAACGGCAAGCAATGGGTCAATAACGGCAC 160662 28 100.0 32 ............................ ACCATCGCCGAATATGACAAGGTGCGCTGGGA 160602 28 100.0 32 ............................ TTGAATAACGTCATGGATGATCATGGGGCCAC 160542 28 100.0 32 ............................ ATCCCTCGCAAAGAGTACGACCGCTTGCTTGA 160482 28 100.0 32 ............................ ACTGTGCGGCCACCACGGCCAGCATGGATATT 160422 28 100.0 32 ............................ GATTTGCGCGATTGGTTTAAAGGCGCCAAAGA 160362 28 100.0 32 ............................ TGCCAACCACTGCCACTATTCTGGCTGACGAA 160302 28 100.0 32 ............................ ATCACAAAGCGGCCAACATTACCCCAAAGCTG 160242 28 100.0 32 ............................ ACCATGCCCGATGAAATATTCATGCCCTCAAC 160182 28 100.0 33 ............................ ATCAGGAATTGAGACGGTTACAAAGGCATGCAA 160121 28 100.0 32 ............................ ACCCATTACGCTCGTTCCTCGCTACAGGGTTC 160061 28 100.0 32 ............................ ATATTATTGTCACGCTCAGCGTTAGTTTTTAC 160001 28 100.0 32 ............................ GCTAACACTCTCTAACCGCCGATCAATCAGTG 159941 28 100.0 32 ............................ CAAAAAGCCTTATTACACCGACCAGTTAGGCG 159881 28 100.0 32 ............................ TTAAGGCTAACCGTGACGATGCGCGAATTGAC 159821 28 100.0 32 ............................ TTCATCGCCCGAGCGGATCGGTCAAACTCAGT 159761 28 100.0 32 ............................ TACTCCCCGCGCGCCGAGGCTAGTAGCTCACC 159701 28 100.0 32 ............................ ATGACCCGAGTCGCGGACACTCTCTCGGGAAC 159641 28 100.0 32 ............................ TACAGCGCCGGTAGTTAATGATACAGCGGTGG 159581 28 100.0 32 ............................ GTTGCTCGATCGGGATGCCGCGCGCCGCTTGC 159521 28 100.0 32 ............................ TCCACGCATCGGGAATCGCTCGCCCTCCAGAT 159461 28 100.0 33 ............................ ATGACTTCACGCTGGCCGAAGCCTTCGCGGTAC 159400 28 100.0 32 ............................ CTCGTCGACATCATGAATCTGGATGTCGCAGC 159340 28 100.0 32 ............................ ACTGGTCGCCTTCAGTACGAATGGTTCGGACC 159280 28 100.0 32 ............................ ACATCGCCAACGGGCCTACATCCGGGCCGAAT 159220 28 100.0 32 ............................ AAACGTCACCAGCTGCTTAAGGGATTCGTTCG 159160 28 100.0 32 ............................ ACGGCGATAATGGATTCATAGCGGCGCTATCG 159100 28 100.0 33 ............................ CGAGATTGCGGCAACTTTCGACCGTTACTTCAT 159039 28 100.0 32 ............................ TGATTTTGAACGTGCTGGCCGATGGTGGCCAA 158979 28 100.0 32 ............................ GATAAGCAGATCAAGGCTTTCAAGCCCAAAGA 158919 28 100.0 32 ............................ AAATGCGAGGGTAGCGATCTGTAAGCTACTGA 158859 28 100.0 32 ............................ GGCCTCGCGCCGTCGTTTACCGAGAACGACAT 158799 28 100.0 32 ............................ GCAATGACCTAAAGCGCGAGCATTTAACACAG 158739 28 100.0 32 ............................ AGAACCCTTCGCCACCAGCGCCGCGAATTTTC 158679 28 100.0 33 ............................ CAAGAGAAATACGGCGGATCGATTATCCCGGTT 158618 28 100.0 32 ............................ TGGGGGACGGCCTCCGAGAAAATATTGATGAT 158558 28 100.0 32 ............................ ATACCAGTACCGGCCTACAGCTTGAAATCAAG 158498 28 100.0 32 ............................ AAGTGGTTCGATAGTTGATGAGTTCCATGAGC 158438 28 100.0 32 ............................ ATGCACCCCGGCTCGATAGGCTTCATACCTCA 158378 28 100.0 32 ............................ GCATCCAGATTACGAGCTCGAATAAGCACCGA 158318 28 100.0 32 ............................ GTGGCAATACCAGCTTGAGTATTCAAATGCGA 158258 28 100.0 32 ............................ CTACGGCATTAGCTATTACGCCCGCACTTCAA 158198 28 100.0 32 ............................ GCGTGAGCCTGACCAGCTACGAACCGGCAATC 158138 28 100.0 32 ............................ ACCTCGACCCCGTTAATCGAAGCGACCCCTAC 158078 28 100.0 33 ............................ CGCAAGGCCGCGGGCGTCATGGTTCGCCGCCGC 158017 28 100.0 32 ............................ TGGAAGTGGACGCGGCCAACGACCACGTGCGC 157957 28 100.0 32 ............................ CCACCCTCGCCAAAGGCGAACGCCACCGCGTC 157897 28 100.0 32 ............................ TCGATCGCGCGCCGTCCGGTGGCCAGCGCCAG 157837 28 100.0 32 ............................ GCCACGAACGGCCACGGTGTATTTTTTGAACT 157777 28 100.0 32 ............................ CTGCTGGATGATCTGGACGCCGGTATCTTCCG 157717 28 100.0 32 ............................ GTAACAAAGCAGACGCGCTGTACGAGGTGCTG 157657 28 100.0 32 ............................ GTGCAAGGGATGCAGTAAATCAGCTAGGAAAT 157597 28 96.4 31 ......................C..... CACCACAGGTTTACTCCCCGGCGATTTGCAG 157538 28 96.4 32 ......................C..... TCACGTATTGCGTCGAAAAGATCGCTGGGCTG 157478 28 96.4 0 ......................G..... | ========== ====== ====== ====== ============================ ================================= ================== 98 28 99.9 32 GTTCGCTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGCCTTGAACAACTGATGGCTGTTCAGTGGCTAACCGGTATGCGTGATCACGTTAGTGTTAGCGACGCGTTGGCGACCCCGGCCAATGCTAAGCATACCAACGTAGCGCGCAAGCAGTTCAACACAGGAAGCCCCAGCCGCGCGAAGCGCTATGCCAAGCGGCATGACATTTCAGAAGAAGCAGCGCGTGATATCTACGCAAAAGTAGCGGAAAAGCGTATTGAGCTGCCGTTTGTGCAGATCAATAGCCGCTCTACACAGCAGCGCTTTTGCTTATTCATTGAACATGGAAAGCCGCAGGAAAAAGCGGTGGCAGGCACATTTAACCATTATGGCTTAAGCAGTAACGCCACCGTGCCCTGGTTTTGACCCTTTTTCTTTGTATGAATAAGGACCGCGATTAATCAACCACTTAGCGGTATCTCCCAGGAAAGGGTGATACCGCTTTTTTTGGGCAAAGTTCTTTAACAATCAGTAGATTATTTTTGGTAAGCTCTA # Right flank : TAGACAAGCGTTACTATCTTTTGGTGCTGTCTTGAAATTAACGCTAGCGTTCAGCTTTAAGCAAAAGAGCCTCAATGGAGGCTCTTTGAAATAGCGGTGTTGGAACCGCTTATTTATCCTTGTCCCAGTGTTCAAAGGCGCGCTTGTCATCGGGGAGCCGGACGATGTCACCGATGTTTAGATCAGGCAGGCCTTTAATATGGTGCCCTTTGGTATCCATGATGGCGGCAACGCTGCCAATGCTCACGGCGTCTTCTTCTCGGTAGGCTTCCACTTTTACGTGAACAATGTGGCCTTGGTAGCGAGCGGATAAAATATCGCCGGTGCCAATGCGGGCGTGTTCATGGTGATCATTAGCAAATAATTTGGATACGCTGTCTTTGCCGGGGTCTTCCCATTCGATATGTCGATGCATCGTGGTTTCCTTGTAAGTGGGCCGAAAAACACAAGTGTAGTTTGGTTTTTATTAGTTTTGCTAGTTATTGGTTAATGGGACCTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //