Array 1 1536539-1537848 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCVF01000001.1 Escherichia coli strain VREC0418, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1536539 29 100.0 32 ............................. TTGCCCGGCGCACAGGTGCACATCCCGGAAAA 1536600 29 100.0 32 ............................. CCTCAACTGGCGTTTGAGTTGTAGATGTCTGA 1536661 29 100.0 32 ............................. CTGCCGACAAATCCCTGCTCGTTGGCTACTCG 1536722 29 100.0 32 ............................. AATAGTGCCTAGGTTGTACCATTTTTGATGTT 1536783 29 100.0 32 ............................. ATTCAGAAAATTTAAAAATGTGGGCGCGTGGC 1536844 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 1536905 29 100.0 32 ............................. GTGTATGCGGGTGTGTGTGGCTGCCAGTGCCG 1536966 29 100.0 32 ............................. GCTCATTTTCCGGTGAAGTGAAAGCGTCTACC 1537027 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 1537088 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 1537149 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 1537210 29 100.0 32 ............................. TCTTCACCGGTTTTGATTTCAAGTTTTTTGAG 1537271 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 1537332 29 100.0 32 ............................. CGATCTTCAATTCTGCAAACGTCCAGGTAATA 1537393 29 100.0 32 ............................. TCGCTGGCTACCCTGGGGGTATTCAGTGACTA 1537454 29 96.6 32 ............................T TGAGATGCCGTTTGCCGTTTTTCTGTTTTTTC 1537515 29 100.0 32 ............................. TTCTCAGGCTTTACCCACTCTTTTACAGTGTC 1537576 29 96.6 32 ............................A GAAGTTCGGCATTGCCCGCAAAGATTTGTCAC 1537637 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 1537698 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 1537759 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 1537820 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1560760-1561766 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCVF01000001.1 Escherichia coli strain VREC0418, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1560760 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 1560821 29 96.6 32 ................T............ CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 1560882 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 1560943 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 1561004 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 1561065 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 1561126 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 1561187 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 1561249 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 1561310 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 1561371 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 1561432 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 1561493 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 1561555 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 1561616 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 1561677 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 1561738 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //