Array 1 51010-49904 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPN010000008.1 Kineothrix sp. MSJ-39 L-50_ctg008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 51009 36 100.0 35 .................................... GGTAGAAACTGATTGTTACGTTATTTTTGGTCCCA 50938 36 100.0 38 .................................... GTATTTGAACAGAATTCTTTACACATAACTTTGCTGTT 50864 36 100.0 35 .................................... TGGTAGATCCTGTTCAAACTATTTCTGTGCAGGAA 50793 36 100.0 34 .................................... GTGATGCATTACTCCAGTTTATTTTCTTTTTGTT 50723 36 100.0 34 .................................... TCAACTTTGCGACCTTTAAAGAACATACGAACAA 50653 36 100.0 37 .................................... TTTGCTGTGCCAGCATTCATAGTATCTTTTTCTACGA 50580 36 100.0 34 .................................... GCACTGCTCTTTTTTGAGAGCAAAGATTTAGCAG 50510 36 100.0 36 .................................... ATTCTTCTAGAAAGGTCTCATCGGTTCCCCACATAT 50438 36 100.0 33 .................................... ATTTGTCGGTATTTTTAAAGTTAATAGTTGTCA 50369 36 100.0 34 .................................... CCTACGTAAGTTTTGTTGATAGTTACTTTCTTTG 50299 36 100.0 33 .................................... TGTTGGTAGAATCTTCGACGACTTCTGCTTCGT 50230 36 100.0 34 .................................... TTGTAGGAATACCGAATGCCCAAATTTCTGTAGG 50160 36 100.0 41 .................................... CATTAACGATAATTTTCTGTCCATAAACAGGCATTTTGTAA 50083 36 100.0 37 .................................... ACCAGGATTCTGGTAGACTCTGCGCAAACTATCTCTG 50010 36 100.0 35 .................................... AGGAATTTCAGCATCCGACGGAACCATTGAAATAT 49939 36 88.9 0 ............................A.T..TG. | ========== ====== ====== ====== ==================================== ========================================= ================== 16 36 99.3 35 ATTTCATGAAAAAAGCCCGAGATATCGGGCATTAAC # Left flank : TCACAAATGATGATGATGATTTTATCAGCTATGATCGGACAACCCAGCTTCTGAAGGACCATCCTGAGATCAATGCCCTTTTCTTTGCTGCAGGCGGTGTTTACGGTGGCTGCCGTGCAGCCCTTGCCATGCGCGGACAGAAAAAGGACATGACGATCATTACTTTTGACAAGGTTGCTACCACTAAGGAAATGGTCGCAAAGGATGTGATCTCTGCCACGATCTGTCAGGAACCGTTCGTACAGGGAAGCAAACCGCTCGATATTCTGTTTTCTTACCTTGCAACGGGTGATCTGCCAAAATCAGAGTACAATTACACAGCGGTAGATATCCGGATCAAGGAAAATATGGATTAGTTTTGCCACGCATTCCGAAAAACCGCATATTTACTGCATTTTCTGTATTTATCTATTGAAAAAATATATTATATCGTGCTAAAATATTTTTAACACGCAAATCGCCTGTTCATCCCTCTTTTTTACTAGGGTTGAGCGGGTAGG # Right flank : TTTTTTATACAGCTCCGAACCAATTTCATAAAAATAGAAAAGACAGACTGTCTACGCTTTTAACAAATGTAGTCAGTCTGTCTTTTTCAGGAAAAATAACAACTAATCATACATGATACTCTTTTTATATAGAAAACAAGTAACCGGTATTGGTCTATGAGAGGAGGGCTCTGTATGAGCTTATTGTATGTAGTTGAAAATGGTACAACACTCGGAGTCAATGGTGGATGTTTTGTTTTAAAACATACTGATCAGCACGAAGAAGCTATCCCTAAGGAAACGATCAGTAGCATCTGTATCTTTGGCAAGACACAGATCACAACACAATGCACGGAGTTCTGTCTCAAAAAAGGAATACGTATCAGCTACTTTTCACAAAGTGGCTCCTTCTATGGCACACTTCTGTCTCCCGGTCAGACAAATATCAAAAGATTGCGCAAACAGCTTCAACTAACTGACGATCCTGCCTTTTCTCTCGCTATGGCAAAAAAGATAATTGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCATGAAAAAAGCCCGAGATATCGGGCATTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.70,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 13737-15691 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPN010000012.1 Kineothrix sp. MSJ-39 L-50_ctg012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 13737 32 100.0 36 ................................ ATTTTGTGTCCTCCTTAATCAAAAAGAGCCCCGGGA 13805 32 100.0 33 ................................ CGCAATGCTTGGCGGCCACTTGCTCGTCTGCAC 13870 32 100.0 35 ................................ GATCAGGAACATGATGCAGGCGATTGAGCAGGGCA 13937 32 100.0 34 ................................ TGTGCAGCTGAGCACAATGCGCGGTATACTGCAG 14003 32 100.0 33 ................................ CTGAATTTGGCTTTGAAGCGCAGCAGGAATACA 14068 32 100.0 33 ................................ TCTTTGATTTTGGTCACTATAGGTTCAAACACC 14133 32 100.0 35 ................................ AGAAAAGAAGGCTTTTGCAAGAAAAGGTCAGGCAT 14200 32 100.0 33 ................................ AATCGAAAAATCATGAAGCTGCCCTAACCTGAT 14265 32 100.0 34 ................................ GTTTCAACATCATATAAAGAAGCAAAGAATCTGA 14331 32 100.0 35 ................................ GCTTTATAAAGGCGGTAATTTTAAGACTAACAGCC 14398 32 100.0 34 ................................ TCACAAGGATATAATTGATAAGCTATCTAATATT 14464 32 100.0 33 ................................ TTCTCTGAGCGATTTAATGATATTTCCGGTTAA 14529 32 96.9 35 ...................T............ TGTGAAATCACGATACCGAAAATACGGTGAAGAAC 14596 32 96.9 34 ...................T............ TGTTACAATCTCAACTATTGTCGCTCTTGCTGCT 14662 32 96.9 36 ...................T............ AAACGCAAAAGCAGCGCTCTCGACCTGGTAAGTTAA 14730 32 96.9 34 ...................T............ ATTGTTTACATTATCCATGTCATTCTCCCAACCA 14796 32 96.9 34 ...................T............ TGCATCAGGAGCGTAACCAGTATAAGAAATATTA 14862 32 93.8 33 ..........A..........A.......... AGAAATCTATTATCGTCTTTGTAAATATTATGC 14927 32 100.0 33 ................................ AAGGCTTTTGCGGTTGACAGATGTAATGTAAAT CC [14933] 14994 32 96.9 36 ..........A..................... AGGTAAGCCACCTGTGTCCGGAACCACGATGTGACA 15062 32 93.8 35 ..........A.....A............... TTATGTACTCGATCAGATTCCGAACGGAGTAGATC 15129 32 93.8 36 ..........A........T............ TGTGTTGCTGCATGAACTGACTCATGCCACAGGAGC 15197 32 87.5 34 ...A......A........T....G....... TGCCAGTGCCTTATTTAAATCAAGCGTACGGATG 15263 32 93.8 34 ........T.......A............... TGATTGTCGCCGGTCGTACGCTTCTGCCGGATGT 15329 32 90.6 34 ..........AT.......T............ CATCTGTTTGATCTCACAAAGGCTGTTTGTAAAT 15395 32 93.8 33 ..........A..........C.......... AGCACTGCTATATACTTTGCGATCCACGCTGGT 15460 32 90.6 35 ........T.A........T............ TTTCACTGCCATATACACTACTGCTGCAGGATAGA 15527 32 87.5 34 ..........A.A......T.A.......... AGTTCAGATGCTAATGGCGCGCAGTAAGCAGTTA 15593 32 84.4 34 ..........AT..AA...T............ TGATTGTCGCCGGTCGTATGCTTCTGCCGGATGT A [15602] 15660 32 81.2 0 .......T..AT.A.....TA........... | ========== ====== ====== ====== ================================ ==================================== ================== 30 32 95.7 34 GTCGCTCCCCTCGCGGGAGCGTGGATTGAAAT # Left flank : TGATATAGAGGAATATCCACCATTTTTATGGAAGTAGGTGATAGAATGTTGGTCTTGGTTACATATGATGTATCAACGCAGGATAAAGCTGGAAGAACACGGCTTAGAAAAGTGGCAAAAGAATGTATCAATTATGGTCAAAGGGTACAAAATTCAGTTTTTGAATGCTGTTTAGATGCATCACAGGCTTTACTATTAAAGGACAAATTAGTTCACTTAATTAAAGAAGATGAGGATAGCTTACGTTTTTATTATTTGGGAAATAAGTATGATACCAAGATTGAGCATTTTGGTGCGAAATCAACTTATGAACCGGAGGGGATATTGATCATATGATTGGAGTGCGAAGGTAGAGCAATCATAAAATACCGGAGGGTTCGCACCAATTTTTTGATGATGGTAGTGTATTAAAATAGTTAACATTATGATAAAGAATCAAAATGTATGTAGAAATGCATAAAAAATTACTTTAGTCAAAATTGCTTTTGTGCAATTTTGCA # Right flank : TAATAAGATGATTGTCAGCATGGCAAATGTTGAGGGCGATTCCACTCACAGAAGTGTAAAATAAAATTGAGGTAGCTTTTGACCTATATTATAGAAGACTTGGTCGCAATACCAATAGTGTGGTAATATATAAAAAATTATATTATTTTACAGGAGTTTCCATTGATACAAAGCGATTTTCTCACCCACCTCACCCAACTGAATATTACCCTCAGCCCACAGCAGCTTACGGCAGTACAGGCAGTAGAAGGTCCTGTACTGCTTTTGGCGGTTCCGGGAAGTGGAAAGACGACCGTGCTGGTGGCGCGTCTTGGATACATGGTAAAGTGCTGCTCGGTATACCCGGAGGAAATACTGACGCTGACCTATACAGTGGCAGCGACAAAGGACATGGCGGAGCGTTTCCGGTATCTTTTTGGCAGTGAGCTGGCTTCGCGGATGGAGTTTCGTACCATTAACGGAATTTGCTCAAAGGTAATCTATGAGTATGGCAGAAGGAT # Questionable array : NO Score: 8.68 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTCGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-35] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //