Array 1 101594-100284 **** Predicted by CRISPRDetect 2.4 *** >NZ_UDGN01000003.1 Escherichia coli strain VREC0513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101593 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 101532 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 101471 29 100.0 32 ............................. GGGGATTCGCGTACCTGCGCGCCAGTTCCCCG 101410 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 101349 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 101288 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 101227 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 101166 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 101105 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 101044 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 100983 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 100922 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 100861 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 100800 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 100739 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 100678 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 100617 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 100556 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 100495 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 100434 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 100373 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 100312 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 118283-117095 **** Predicted by CRISPRDetect 2.4 *** >NZ_UDGN01000003.1 Escherichia coli strain VREC0513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 118282 29 100.0 32 ............................. CCTCCCCGCTCACGCCAACGTTAAACGTTATC 118221 29 100.0 32 ............................. ATCCCCCGGTTATTGACCCCAAAACTGGTGAG 118160 29 100.0 32 ............................. GAACGGCGGCTATACGGATTCGACAGGTCAGC 118099 29 100.0 32 ............................. TAACCCGGATAACTGGCAGAGTGCGAATAAAC 118038 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 117977 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 117916 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 117855 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 117794 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 117733 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 117672 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 117611 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 117550 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 117489 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 117428 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 117367 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 117306 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 117245 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 117184 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 117123 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //