Array 1 775-120 **** Predicted by CRISPRDetect 2.4 *** >NZ_UXER01000162.1 Flavobacterium psychrophilum isolate 15-SE027_S5_R1.fastq.gz, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 774 46 91.3 30 T.G..T...G.................................... TAACTTAAAATAAATAAACGCCATGACACA 698 46 100.0 30 .............................................. TCACGATCTAATGACGAAAACAATACAAGT 622 46 100.0 30 .............................................. CCAAAATGGTTGTATGATTCTGAACTAATA 546 46 100.0 30 .............................................. CAGTAGGAAAAAAAACAATTGATGAGTATT 470 46 100.0 30 .............................................. TTCAAATTTACATGCACTTAACAGGTTTCA 394 46 100.0 30 .............................................. AGACCCCTGTAAACGATTGTTTAGATATTA 318 46 100.0 30 .............................................. ACACAGCTGAAGCACTTGACGAAATGATGC 242 46 100.0 30 .............................................. CGTTGTTGGTTTGCGACTCTTGCGGATTTG 166 46 93.5 0 .......................................G...T.T | A [123] ========== ====== ====== ====== ============================================== ============================== ================== 9 46 98.3 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : TAAAAATGGCATGTTTTGGTGGTTCTTCTAATGTTTTCAAAAAAGCATTAAATGCTGCAGATGATAACATGTGAACCTCATCGATAATATAAACTTTATATTGTCCCGTTTGTGGGGGGATACGAACTTGATCGATTAGATTACGAATATCATCGACCGAATTGTTTGAAGCCGCATCGAGTTCGAAAACATTGAAAGCAAAATCTTCGTTCGGGTCGTCGTAACCTGGTTGGTTTATTTTTCTGGCTAAAATTCTGGCACAAGTTGTTTTTCCTACGCCACGAGGACCAGTAAATAATAGGGCTGATGCCAAATGATTTGTTTCTATCGCATTTAGTAACGTATTGGTAATGGCTTGCTGCCCCACCACGTCTTTAAACGTTTGCGGACGATATTTACGAGCCGATACTACAAATTGTTCCATAAAAAAATATTCGAAAGCAAATATAATGGTAATAAGTGAAAATGCAAAAGTGAAAAGTGAAAAGTTTTAAAATGTT # Right flank : TCCCGCAAAGTGTGTAAGTTAAAAAGTTAGGCTTGAATTTTATAATCTGAGCCTTTTGTCAAATATAAGATTAAATTGATTTAAAACAATACCCCAATTTTGTATTGGCATTGACCATTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 9993-6382 **** Predicted by CRISPRDetect 2.4 *** >NZ_UXER01000230.1 Flavobacterium psychrophilum isolate 15-SE027_S5_R1.fastq.gz, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 9992 46 100.0 31 .............................................. TTACTCTGAATAAGGTTGTTTTGATGGCGTG 9915 46 100.0 30 .............................................. TTTACAGACGAAAAGGATAGTGCATTACTA 9839 46 100.0 30 .............................................. AGATTATTTTGATTACATCAACGAAATTAA 9763 46 100.0 30 .............................................. GCTCTACAATTCCAGCATCATATAGTTCAA 9687 46 100.0 30 .............................................. TGGCGGAATTAAAAGACCAAATGGGTTTCG 9611 46 100.0 30 .............................................. ATAATTTTTTCAAAAGAAACTCAAGAAATT 9535 46 100.0 30 .............................................. GCCATCTTTTTTTTATTAAAACCCGCCTAG 9459 46 100.0 29 .............................................. TGAATTTAAAAAAGGATACAATTGGGCTT 9384 46 100.0 29 .............................................. TTGGAATTTTATCGAATAATAAAGAAATT 9309 46 100.0 29 .............................................. AACAAATTCCTTAAATGATGAGTTTCCAA 9234 46 100.0 29 .............................................. AGGCAAAATAACTGGGTAAACCAACGAGC 9159 46 100.0 30 .............................................. AAATTGCAGAATTACAAGCAGTAATAGACG 9083 46 100.0 30 .............................................. CTGCTGGTATGGCGTTATTTGGCGACCAAT 9007 46 97.8 30 ..........................................A... TTTTTGCGCTTACCTGTTTCTCATAGCCAT 8931 46 100.0 30 .............................................. CTTATGAGAATACAAAACAATATTCAACAT 8855 46 100.0 30 .............................................. AATTAAAAGAGACCGCATTGGCACCGTGCC 8779 46 100.0 30 .............................................. AAATTGAATTAGAAAACACCGAAAAAACAG 8703 46 100.0 30 .............................................. GTATCGTGTTAAAAGCAGTTGCGATTATTG 8627 46 100.0 29 .............................................. CATCTGTCAATAACTTGTTGAATGCAAAC 8552 46 100.0 30 .............................................. TGCCGTTGTTTCGGGTTGCCGTCCCTTTTT 8476 46 100.0 30 .............................................. ACGATGCTGATAGAGTAGCGAAGCAATACT 8400 46 100.0 30 .............................................. TCAGGTATTCGGACAAGATTATAGCGTTAG 8324 46 100.0 30 .............................................. GCAAACACGAAGGAATACTTTGCAAACTAC 8248 46 100.0 29 .............................................. ATGTTTAGCCAAATAGATGAAGAAGATGG 8173 46 100.0 30 .............................................. TTGAAAAATATTACGATGAAAGATTCCTTG 8097 46 100.0 31 .............................................. TTGCGATTTTCTGCGATGATTTCAGCATCTT 8020 46 100.0 30 .............................................. AAAAAGAAAAGATTTGACATACACGATGGA 7944 46 100.0 30 .............................................. AGTTACTGCTCCAATTTTCATTGACAACAG 7868 46 100.0 30 .............................................. CGCTGTTTTCTGAAAGCCATCTTCTTACCA 7792 46 100.0 30 .............................................. TTATAGGCAAGTATTACATTATGGGTTCAA 7716 46 100.0 30 .............................................. CAATAATCTTTTTTAATATATTCATTTACT 7640 46 100.0 30 .............................................. CACTATCGAATAACTCTTTATGAGAATCGC 7564 46 100.0 29 .............................................. TAGATGATGATAGCGAGCTATGTCCTTGG 7489 46 100.0 30 .............................................. CTACAGCGCGTTGCAAATGTTGGTGGTATA 7413 46 100.0 30 .............................................. ATCAAGGAGATATTATAGATATGGTTTCAG 7337 46 100.0 30 .............................................. TGGGGCTTATTATGTAACGCCCGAGAAGAC 7261 46 100.0 30 .............................................. TTGCAATTACGCCTCGTAAATAAGGCAATA 7185 46 100.0 30 .............................................. AAAAAAAAGCCTGACACATACGCTTTCACG 7109 46 100.0 29 .............................................. AATACACCTAATAAATTAAGTAACCAAGT 7034 46 100.0 30 .............................................. TGCGAATCTCTTGGGAGCTACCTACAGAAT 6958 46 100.0 30 .............................................. GAGAAAAACTAGCATACGAGATTAGAGATG 6882 46 100.0 30 .............................................. CTAAATCTGTTCGTATATCGTCAAATGATA 6806 46 100.0 30 .............................................. AAGAAGACAAGGCAATGAAAGAAATACTAA 6730 46 100.0 29 .............................................. ATAACAGATGGCGCACCATTAATCTACAC 6655 46 100.0 30 .............................................. TACTTTGCAAAGTCAAATGATAAGCCATAT 6579 46 100.0 30 .............................................. TTAATGGGATATTTGCGCACACATGCCTCG 6503 46 100.0 30 .............................................. ATAACGACAATGCAAAACTTGTTGAAAATG 6427 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 48 46 100.0 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : CTTCATCTTCACCAAAGGAAGTTTTTATTTTCTTGGTTCCGTGTCCATTACGGTAATTACCATTGAAGGTTTTTTGATGTTTTTCATTGTCTAAATGTGCATCAAGTTCTGCTTCAAGCATATGTTCAACTGCTCGTTTGTGCATTTGTTTAAAAAATGAAGTTAAATCTTCTCCATTTTTAAAGGATTTGTAGAATTCCTTGTTGTTTAATAAGTTGTCTTTGTCTATCATAACTATGTAAATATATAAAATGTTAAAAAGTTATTTCCGAAAATTTTTGAGCTTTTTGAATTAGCTCAAATTTTCAGAATAACTTTTTAACTTACACACTTTGTGTTATACTGCCTATTTTAGCTTATAATTACCAACCAAAAAAAGATATATCTTGTTCAGGTAAT # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGCTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTGTGTACTTCGGCATTTTCTCTGCTGGCACAAAACCGCATATAGATCGAAAATTGAAACATAGAAAAACCATCGTCCAATAATTTCTTTCGAAATTCACTGGCAATTTTACGCTCTTTTCGCGTTTCGGTGGGCAGGTCAAAAAATACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //