Array 1 66797-67740 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLN01000003.1 Gilliamella apis strain ESL0169 Ga0133555_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66797 29 100.0 32 ............................. TTTTACTGTCAAGTTCGGATAAACTCAAATCG 66858 29 100.0 32 ............................. ACGGTTTTAAATGGCATATCATTATTGGAAAC 66919 29 100.0 32 ............................. ATAAAGAAAATCAGATTGAGGGATGTTAAGTC 66980 29 100.0 32 ............................. AAAAAAGGTTTAATTCCTGAGCAAACTTTATA 67041 29 100.0 32 ............................. ATTTTTTAACGTTTGGCTTTAAAATTCCGCTA 67102 29 100.0 32 ............................. CGGTATGCATAGTTCCTGCCGTGTTATTAACC 67163 29 100.0 32 ............................. AAAAAATACTTAATTCATTTTATAGCGAATTA 67224 29 100.0 32 ............................. TGATTTCGTCAAATAATTCGAAAATTGCATTA 67285 29 100.0 32 ............................. CAGAGATTGATCATGCGAATTACTAGAACCTA 67346 29 100.0 32 ............................. TCTAAATTTTTATCGATAGTATGAAAACCTAG 67407 29 100.0 32 ............................. AAAATCTAAAAATTTATCAATAGGTGGGATAA 67468 29 100.0 32 ............................. GACAGTGTGATGAATGATGCTAAAGCGCGATT 67529 29 100.0 32 ............................. CATTTGATTTAAAATGGAATATCGTCATCAAA 67590 29 100.0 32 ............................. ACTCGCCCTTAACTAAGATTTTTACAGAATAT 67651 29 100.0 32 ............................. ATATATTTTTTTATTTAACACAGTTATTTCCT 67712 29 93.1 0 ..........................A.T | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GAGTTCCCTGTAGGTACAGGGATATACCG # Left flank : CTTATCGAAGAAGTTTTGTCTGCTGGTGGTATTGAACCGCCACTAGCTCCAGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTCTTGCTGACAGTGGCTTTAGGAGTCGCTAAAAATGAGTATGTGTGTTGTAGTAACTGAAAATGTCCCGCCTAGGTTACGAGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGGGTTTACATCGGTGATATATCAAGACCAATAAGAGAAATGCTATGGCAACAAATCACTAAACTTGCTGAGGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACTGAGTCAGGATTTGACTTTCAAACTTATGGTGCAAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGGTTGGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAATGTTCTTTAAAAATTAGAAAAATTTGGTAGATTTTAACTAACTAAAAAATATTATATAAAACAAATATCTATATTTAGA # Right flank : TTTATTAGCTAATAAAATTACATCCAAATGGTTTTAAATTATCTACCTTTATGTGAGTAGATGGTATACACTCCTCAATATTTTTTACAAGGCTCTAATGATAGCTATTTATAAAAATAAAAGTTAATAATCATATGTATAGATAATATGAAATAGAGGTTTTTTAGTTAAACTAAAATAATTATTAAAAATAGCGTACAATACTCAACATTAATCGTAAATTCATGATCAATCATTTAGGAATTTTGTATGACAGGTAAATTTATTGTCATCGAAGGTTTAGAAGGTGCTGGCAAAACAACAGCCATCAATACTGTTGCACGTATTTTAAAACAACATCATATTTCTGATTTACAATTTACCCGTGAACCTGGAGGTACACCAATTGCAGAAGCATTACGAAATATTATTAAAAATGGTTTAGATAATGAGCCGCTAACTGATAAAGCGGAATTGCTAATGCTTTATGCTGCTCGTATTCAATTGGTTGATAATGTAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTAGGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 70369-69912 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLN01000004.1 Gilliamella apis strain ESL0169 Ga0133555_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 70368 29 100.0 32 ............................. AAAATTAAGAGAAGTTGAAAATTTTTGTGAAA 70307 29 100.0 33 ............................. ATATATTACTTTTACATATAGCGTTTTACGAAC 70245 29 100.0 32 ............................. CCTTTTTTGGTTGCGCATAACGCTCTCAATAA 70184 29 100.0 32 ............................. GAACTGGTAATCCTAATGAGATAGCCAAGGTT 70123 29 100.0 32 ............................. CCACGCCCGTCAGAGGAAAATGCTGTCGGTAC 70062 29 100.0 32 ............................. CGGTCGAGAGTATGCTCGATAATGTGATTGCT 70001 29 100.0 32 ............................. ATATTTTGTCAGTTTCGTTTTTAACATTGTGC 69940 29 82.8 0 .....................C..TTGA. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 97.8 32 GTGTTCCCTATACACATAGGGATAAACCG # Left flank : TTCAACGATGATGGTGAACCAACCAGCACAGCCGGCCGCCCTATTCTATCGGCCATTGAAGGTCAAGATTGTGATCAGGTGGTAGTGGTGGTCACCCGCTACTTTGGTGGCATCAAATTAGGTACAGGAGGACTCATTCGGGCTTACGGTGGTTCGGCTAGTCACTGCTTACAACAAGCAGAATTGATCGAACTTATTGCTAGAACATCATTACAATTTCACTGCTATTACAATGAATGGCCAATTATTGAAAACCGCTTAAAAGAACTAGATGCAGTCATTGAACAACAAGATTTTGATGCTGAAGGTGTAACTGTCATTATTGCTATAACACAGGATAATGTAGTCATACTTAAAAAAAATATTAGCGATATTACTCGCGGTAGAGTGATTATCAAGACTTAAAACACCTGTGTAAATATCCATCCAAATACAGCAAAAAAATTGGTAGAATTTGTAGACTGCGTATTTTAATTATAAAACAAACGGTTATAATTAGA # Right flank : TTCCCTGTGTGTACAGGAATTAACTTCAAATTCAAACAAACCACCTTCGGGTGGTTTTTTATTGCCCAAACCTTTTAAATAACATACCATTACCCTAAAAAGGAGATGGCATGAAAAGAATTACTTTATTTGGGATAGCTTGTTTTGCTTTGTATGGTTGCGGTAACGATAGTGATGGGCAAAAGGTCACTGAGGAGATGTTACTTGGTGAGTGGAACTGCAAAGTTAGCTCGCAAGAAGCAGAATCAAGGAATGGTAAGTTACAAGATTTTGGTGATCCAGAGTTCGAGGAAAATAAATACATTTTTACCAAAAAAGATGGAAAGCTTTTTGTAAGTTTATCTTTATATAAAGAAGATTTAATGCCTTTTAATCTAGAGGATATTTACAAAAGACCTGAGTATACGGAATATGATAGACAAAGAACTCAAAAGATTAAATACCTATCAAAAGATAGTTTTAGTCTAAACGGTACATATACAATCATCGATAAAAACAAC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 471741-471413 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLN01000004.1 Gilliamella apis strain ESL0169 Ga0133555_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 471740 28 100.0 32 ............................ CGTCAAAACGTGGGCGGTTGGCACGCATGGGG 471680 28 100.0 32 ............................ AACGGGCAGAGTTCTATCTCTAACAAACTGAT 471620 28 100.0 32 ............................ CGAACACAGAAAAACAAAAATGTTCGCAGCAG 471560 28 100.0 32 ............................ TATTATCACAATGCCCGTAATGACTATGAAAG 471500 28 100.0 32 ............................ TGATAAGAAGAAAACTAAGAAAACCAAGAAAA 471440 28 78.6 0 .................CTTT....TT. | ========== ====== ====== ====== ============================ ================================ ================== 6 28 96.4 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : AGGTATTAAGCTGAGGATAAGAAAAATAACGTTAGGGCGATAAAAGCGATTTTGTGGTGCGACATTAGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAAGCTGTGTTTTTTTGGAACAAATTACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATGGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCGCCGTATAGAACTAGCCACCAAACAACAAAACGTCCGAAACTCAAACAACCAAAAAAAAATTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACCTTAAAATAAAATATTTAAAAATCAATATTTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACAACATTTATAGTATATCGGGTTCTA # Right flank : GTAATTAAAATGGATTTTTAGTATTTAAAACTCGCTGTTCTCAAATTTATCTATGAAATAATTAAAACGCTTATATAAGCGTTTTAACTCTGATTAATATCATTATATATACTATAAACTATTAGAACATTAATAGTTGTACAATTAAATTGCAGTCATATAGACCTGATTATTCAGTAAGTTTTTAGGATCAAACTGTTGTTTAATTGCACGCATTAATTGGCGATTTGCTTCAGGAATGGCAGCATTGTAATAATTTACTTTCGCCGTTCCGATGCCATGTTCTGCTGAAGGCAATCCTCCTAATTCAAGACATTTTTGATAAAGCGCTTGGTGAACGTTTTGCAGATCAGATTGCCATTGTTTGTCATCACGATTATCACGCAAAATGCATAGATGAATGTTACCATCACCAGCATGACCAAAGGCTAACATACGCATTTGAGTTTGTGCTTCTAGCTGTTTGGTGAAATTGATAAAATCGCTAATGCGATTTATTG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 248688-248481 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLN01000005.1 Gilliamella apis strain ESL0169 Ga0133555_106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 248687 28 100.0 32 ............................ TTGTTGTGAATCATCAAAAAGTGAGGAATTAG 248627 28 100.0 32 ............................ AGTCAAATTAAAATGTAAAAAGGTTGGGATCA 248567 28 100.0 32 ............................ TTGCCCATATCCAATAATATGGTGCGGATCAT 248507 27 89.3 0 .......A............C...-... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : ATTAGCTCGCTATAAACATAAGAGTTTATTTTGGCAAATAAGTTTGGCGTATTTAATTTAGCGACATTCGCAAAGAGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTAGTCGCCGCGGGAGATAGTAAAGAGGGTTGGCGGCAACCCTCTTAACTCGGACGTATTCACCGTATAGAACTAGTCACCAAACAACAAAACGTCCGAAACTCATCGAACCCAAAAAATTGAGGAACGGGGTTTTTGAACCTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATGATTAAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTATTGGTAAAAATAGACTTTGCCTTTTTACCAACAACATTTATAGTATGTGAGATTCTA # Right flank : TTAATTAAAATTATAACACTCGAAATCCACCAAACTAAAAAAGTTTAGCAAAGGAGTTTTTTAGGTGAATAAATTCACCACATGTTATAATTATGTTTAATTATAATTAACTCTGTAAATATGATGAATAATAGTACAATTGATAACCAATTAAATGAAAAAATGGTGCTTATTTTCAAAGCATTATCTGATCCGGTTAGAATAGAAATCATTAAATATTTAAAAAGTATAGAAACAGAGGTTATCTGTGGTGAAATTGGTCAAGCAGTTGGTATTAGTAAACCTTCAGGAACTTATCATTTTAGGTTATTACAACAAGCAGAATTAATTAATGTAAGAAAGAGTGCTAGGGAAAAATATGTATGGCTTAATAAATCAACATTTGATAAATATGTTACCGGTTTTTTTGATAATCTTTAAAATACTCAAATATTGATTTATTGTTGAATTTATCGCTTTGATTTTATCAAATATTATTTTTTATCCTTTGCTGTTAACCT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 258879-258611 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLN01000005.1 Gilliamella apis strain ESL0169 Ga0133555_106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 258878 28 100.0 32 ............................ ACTAGCTTTACATAAAGCTATCGCCGAGGAAT 258818 28 100.0 32 ............................ TCAGTAAAAAAACAAAATGATGAATTAATTGA 258758 28 100.0 32 ............................ CACGTCCGCAGGCATTTAGTTCTAATACGATA 258698 28 96.4 32 ....................T....... TATATAAGTGGCAGTATAGGTAACATCAAGTA 258638 27 75.0 0 ..A......T-.A.T.....G...A... | A [258623] ========== ====== ====== ====== ============================ ================================ ================== 5 28 94.3 32 GTTCACTGCCGTGTAGGTAGCTTAGAAA # Left flank : TGTCTATCCTTAGCTATTATTTTTTAGTTCTTAGGTATTGAAGCCGAGGATAAGAAAAATAATGTTAGGGCGATAAAAGCGATTTTGTGGTGCGACATTCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAAGACCGAACGAAGGCGGCAGGCAGTCACATAGTGACTACTTGCGTAGTCGCCGCGGGAGATTGTAAAGAGGGGTGGCGCCAACCCTCTTAACTCGGACGTAATCACCATATAGAAACAACCGCAAAACAACAAACGTCCGAAACTCAAACAACCAAAAAAATTTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATTATTAAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGTCTTTTTGCCAACTGCATTTATAGTATATTCGATTCTA # Right flank : TAGAATTTTAAAAGCGATTGATGCAATCTGTTTAATATTTATATCGTATGTTATACCCAAAAGTTGAAAAATACATTTTTAAAAATTAAAACTATATTTTAATGATATAACTTTATAATAATATTTACAAAATTTAACAATTAAACTATTAAATGCAGTTGCGTCGATTTTTTTCAGACACTATACTTTACAGATAATTTTAATCGCAATATTTGGTGGTGATTTAGTCGGTTAAGATGAAATAAAGTAAAATAAAACATGAGATTACTTGACAAAGGATGTTAAAATGCATTATAATTTACAACACCCAACACCCAACACCCAACCTGCCCAACTTATAATTTAAATTCATCAAAGTTAAGCTCTCAATATTCATTTTTTGCTATAAGCGAGATCCCACGAAATTTTGCGCGATCCTTGCTTCAATCATTTTTGTCTCGGCAGATCTTTTTATGGTTATCGTTTAGCTTGTTGCTAATAACTTCCTATACCAGCCACGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //