Array 1 2905-2270 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABGRU010000099.1 Klebsiella pneumoniae strain 4928STDY7071551, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2904 28 96.6 32 ..........-.................. GCCATGCAACGTCTGAACGTCCGAAACATCCC 2844 29 100.0 32 ............................. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 2783 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 2722 29 96.6 32 .............T............... TCGAAGGCAACCACCAGGAACAATAAAACCCC 2661 29 89.7 32 .A..........TG............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 2600 28 89.7 31 ..........-..G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 2541 29 96.6 32 ..........................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 2480 29 93.1 32 ............TC............... TTACGCATTGTGATCAGGATTCGCTTCAGACG 2419 29 96.6 32 ............T................ TCGCCCAGTCCAAAGGGGATGATGCAGGATTG 2358 29 96.6 32 .............T............... GGCATGAGCGCGAACCACTGCGAGAGTGTGGT 2297 28 89.7 0 ..........A............-....A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.0 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : TGAGCGTATTGCCGGAGTGGCCCATCAACAAAGTGGCCGAACTGCTGCCATGGAACGTAGATCTCACCAATAAATAGCCGTCAATACGGCGCTCACTTAACGCTTACGGTCACTTTTGCGTCGAGCCAAGTTATTATCTC # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGCTAGCGTTAAAGGAACATTTAGCCGTGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTATTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACATGATCGGCTTTTCCGTCACATTCATTCAGCTCAGCACCAAAATCACCGCAAACTTCACCTGCATACTGATTTACTTTTTCCAGATGTAACTCACCGAAAAC # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCTTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 105-1164 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABGRU010000047.1 Klebsiella pneumoniae strain 4928STDY7071551, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 105 28 92.9 32 ................CG.......... CTGCACTGCCTGTCACTATTCCTCGAACTGCT T [120] 166 28 89.3 32 ...............GA.........T. AGGGTTCTATTGTTCCTGGTGGTTGCCATCGA A [186] 227 28 89.3 32 A............T.C............ AATTTTTATCGACAAAATCTCATCAAAAGTCA G [244] 288 28 92.9 32 ................CG.......... TGACTCAACCTAAAAGGTGAAATCCCACTGTT G [303] 349 28 100.0 32 ............................ CCTGACGACATCGGATCACATTTGCGTTACCG G [367] 410 28 89.3 32 ..............GT........G... GAAAATGCGTCCGTCAACGCCCTAGCCGAACG 470 28 96.4 32 ...............G............ TTCACCACACTTATAAATTAACAAAACATTAA A [489] 531 27 85.7 32 .......-....A.GT............ AGTTTTTTAAGAAAAAAATTTCACAAAAGTCA T [549] 591 28 96.4 32 .............A.............. TCCCGCTTCGCATTACGGCAACGATCAGCTTA G [609] 652 28 100.0 32 ............................ GAACAGGTCCCAATTCTCCGTCAGCAGCCTCA G [670] 713 28 96.4 32 ...............T............ AGATTCAATTTTAGAATTCATTTCCTAAATTA 773 28 92.9 32 ................CG.......... TGAGATAATAACTTGGCTCGACGCAAAAGTGA C [788] 834 28 92.9 32 ...............TA........... CAATACGCTGATTGATCCACTCGTCAATTTCA 894 28 92.9 32 ...........T...T............ GCCGTTCATATCGATCATCGTCAGGCCGCTGC G [912] 955 28 100.0 32 ............................ CCCTCCGGCATCACACTGCCCGGCGGAGAGAA G [978] 1016 28 100.0 33 ............................ GGGCGTCACATTTCTCGTCCGGGAGCTGGCCCC 1077 28 100.0 32 ............................ TATGATTATCACCCGAAATGTCATCATCCGGA 1137 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 94.9 32 CCGATAACCCCCGCAAGCGGGGGAATAC # Left flank : AGTGTTTGACATTGATAGAGTCCATTAACGTTAATAAGAGGACTCTATCATCGTCAATCGTTAGTAATCGCAACAGGCGGCAGTGGCTTGACGCTTACAAGTGAC # Right flank : CTCTAAAAATAACCGGTTGATTATAAAATAATAAATAGCACCACTAAAATCCACCAGCTTTTGGAGTTAGCGGGCAGTGAAATCAAAAGATTGATTTTCATTGAATGCCTTCACCATAGCAAACAACTCGTCCCCGGTAATCTCAACACCATTCGGTGTGATGACGATTTCTCCAAGTGTAACTGGTACCAGTTCACCCGGCTTCCAGGTCGTAACTGTCCAGTGAGCCTCCACCAGACCGCAGTTATGATTCGCATGACCGCCAAAACGTGGCTCGGCTGCAAAGCGGATTAATGTAGAAATGAAAAGCCCTGCTTCCTCATCAGTCGCATTTTTAATACTCATGCGATGGCTGAGTTCTGCGCCGGTGATAAACGCTTCGTACGGGTCAATCGGGCGGCGAATTGACTCGCGAGATTCCTGCTTCTGATCTTTGCGGGCCTGAATTTTTTCATCGAGCTCCCGTACTTTGATTTGAAGCTCAGCTTTGGTGTCTTTAT # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATAACCCCCGCAAGCGGGGGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.20,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA //