Array 1 21780-21324 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARY01000120.1 Gilliamella apicola strain AM4 NODE_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21779 29 100.0 32 ............................. TTTTTAATAATTTATTTGTCATGTTATGTCTC 21718 29 100.0 32 ............................. GGAAATCGTGGAGTACATAATTATGACGATTA 21657 29 100.0 32 ............................. CAGAATTAACAAAATCTAGGGCGCTGGTACCG 21596 29 100.0 32 ............................. ACGACAATCTCTGGAGTTTTGCGGGACGGTCA 21535 29 100.0 32 ............................. CCAGTTACACCAATAGAGACGTTTACGGCGTT 21474 29 100.0 32 ............................. TTATCAATGTTACCCGTACTAAAAAAGCCTTT 21413 29 100.0 32 ............................. CAACCTCAAGTAAGAATTCCAACCAATAAAGA 21352 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 ATGTTCCCTGTACACACAGGGATAAACCG # Left flank : TAACCGATTTTATATTTCCGAAACAAAATGTTCCCTGTATACACAGGGATAAACCGGCGGTTGTAATACACGCGTTACAAACCGACATATGTTCCCTGTACACACAGGGATAAACCGGCGGTTGTAATACACGCGTTACAAACCGACATATGTTCCCTGTATACACAGGGATAAACCGCGCCATGTTATTCTCACGTCGTCATATGCCTGATGTTCCCTACACACAGGGATAAATCGAGGATGCGTCAATATTACATAGTATTTTTTAGCTATTCAAATAATCACATTCTATATTTCATTGTTTACACGTTTTTAATTATATGAAAAATATAAACTTATCGGTAAAATTCCGTAGAATCTAACTTTAATTTCCATCAATTGTAATTAATCAAATAAAAACATAAGGTTATAAATACTGATTTTGATAAAAAATAACCTAAAAAATTGGTAGAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : GTAGGATACACTAGAGTATCGAAGATTGAACAGTGTACCCGTCTATACATGGATTCTTAATTAAGAAAGTTCTGACAAGTCAATTTTCATATCCCATGCCTACTCAGGGGGATTTTTATTCTGCAAACTTATTTTTGTGATCATATCGATTGTAATGGATAGCATCACTTATTAAGTAGTTGTAAATTTCATCTACAATTTCTATCCCATTTTTTAAGTAATCCGCTTCACGTTTTTTGCCACGTTCACCAGGAAAAAAGACTTCACTATTACCTTTAGCAGGTTTAACGTGTTTTAGTTGATCTAGCATGGCAGACATGTTCTTTTTGAACGTTTCAAGACCGATAAAATAATCGGGATTGATAACAATATGCAAATGTCCAAGATCGCGTCCTTTAGACAAGTCGGCATACATGGATGAGACGTTTTTACCAAATGGTACACCTAATAAAATGCCTGACAACACATCCACCATCATCATTAACCCATAACCTTTGGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22375-22043 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARY01000120.1 Gilliamella apicola strain AM4 NODE_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22374 29 96.6 32 ............................A CCATTAAATCCAATCATAATACGATTTAATGC 22313 29 100.0 32 ............................. AGATATAACCGATTTTATATTTCCGAAACAAA 22252 29 100.0 32 ............................. GCGGTTGTAATACACGCGTTACAAACCGACAT 22191 29 96.6 32 ............C................ GCGGTTGTAATACACGCGTTACAAACCGACAT 22130 29 100.0 32 ............................. CGCCATGTTATTCTCACGTCGTCATATGCCTG 22069 27 86.2 0 .........--.C.............T.. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : ATATTTTTTAGCTATTCAAATAATCGCAATTCTATATTTCATTGTTTATCATTTATTTAATTACATGAAAAATATAAGTTTATTGGTAGAATTTCGTAGAATCGAATTTTAATTTCCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATACAGATTTAGATAAAAAATAGCCAAAAAAATCGGTAGAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGG # Right flank : AGGATGCGTCAATATTACATAGTATTTTTTAGCTATTCAAATAATCACATTCTATATTTCATTGTTTACACGTTTTTAATTATATGAAAAATATAAACTTATCGGTAAAATTCCGTAGAATCTAACTTTAATTTCCATCAATTGTAATTAATCAAATAAAAACATAAGGTTATAAATACTGATTTTGATAAAAAATAACCTAAAAAATTGGTAGAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGTATGTTCCCTGTACACACAGGGATAAACCGTTTTTAATAATTTATTTGTCATGTTATGTCTCATGTTCCCTGTACACACAGGGATAAACCGGGAAATCGTGGAGTACATAATTATGACGATTAATGTTCCCTGTACACACAGGGATAAACCGCAGAATTAACAAAATCTAGGGCGCTGGTACCGATGTTCCCTGTACACACAGGGATAAACCGACGACAATCTCTGGAGTTTTGCGGG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13453-12999 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARY01000107.1 Gilliamella apicola strain AM4 NODE_60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 13452 26 100.0 35 .......................... CCGTTGTTTTTTATATGATTAGCATGTTTTTGCAA 13391 26 100.0 35 .......................... CCGAAATATCAAAAAAGTTTTGTTCCTCATCATTA 13330 26 100.0 35 .......................... CCGAAACGGGATTAGCAGAACTGGAACAAAAGGCA 13269 26 100.0 35 .......................... CCGCCCATTGAAGATAGATTTTCTGATTATAAATC 13208 26 100.0 35 .......................... CCGCAGGTTTGCCCTGATAATTTGCTACAAAATCA 13147 26 100.0 35 .......................... CCGGTCGATGGATTTAGAGAGCGTCAAGTTGACAT 13086 26 100.0 36 .......................... CCGCAGTGCTGATATCGTCGAAAGCGTTAACTTAAC 13024 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ==================================== ================== 8 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : ACATTTAAATTAAACTTAAGGTGAAGTTAATTTCACCAGAAGAGTAAATTATGATAACCATGGCGATACAATTACCAAAAAAGTTGATATTTGTATTGGTTGCCGAGAAAGTCAGGTATTTCCTCTATATAGGGGTAAAATATGTCAAAAAGTTTCAGGTTAACCATACGTTTCAGTATAAATATCAATAAACAATTTAGCTTAACCTTATGTTCCCTGTACACACAAGGATAAATCGGCGGGCATCAATATTACATAGCATTTTTTGCTATTCAAAAATCGCAATTATATATTTTATTGTTTACCATTTTTTTAATTATATGAAAAATATAAATTTATCGGTAGAATCCCGTAGAATGTAATTTTAATTTCTATTAATTTTAATTAATTAAATAAAAACATAGTGTTATAAAATGTGATTTTAATGAAAAATATCCCAAAAAATCGGTAGAAATTTGACAGTCAATATTTTAATTATAAAACAGTATGTTATAATTAGA # Right flank : CCAATATATTCTATAGATAAAACTCGTTATTATTAATAAGAACTATATTGCTAATTTAAGGATAATTTTTCAGGTAAGCGTTTGAGAATGATAACTTAAAAAAATTATAAAAAATCTTCTAAAAAAGGGATTTAATTATCATAAATCAAATGATATGGTTGATTTCTTGAAATTTCGGACTTTTCCCAAATCTTATTGGTCTCACGATAATTTTTTGTGTATCAAACAATTTATTTTGTTAGAAATGGTACTCAAATATGATTTATTGCCAATTTCGAAATTAACCAAGAAAAAACAATTATAATGATAAAACATTTAGAAATTACATCAAACTATTTGCTAAATCTAAAACGTCGAAATTGAGATAATGATTTTTAGTTGAATTAGTTAATGAAGTAAAAAATTCAATTAGTTCTGTTAACCAAATAATTACTACAATAATAATTCATGATGATAATAAATTACTTTTAGCAGAGAAAATAAGAGATTTGCTTAATAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 182-940 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARY01000097.1 Gilliamella apicola strain AM4 NODE_70, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 182 26 100.0 35 .......................... CCGGGTAATAATTATTTTTTTAAATTACTTTTAAA 243 26 100.0 35 .......................... CCTTATTCCAATGGTGACTCAAGGTGATATTATAC 304 26 100.0 35 .......................... CCGTTCGGGTTCTATATTCATTTTAGTTATGTCTG 365 26 100.0 35 .......................... CCGGAAACACTCATCATCTTTCATTCGATGAAAAG 426 26 100.0 35 .......................... CCGTTATTGACATATAACATTATGTGGTGATAATC 487 26 100.0 35 .......................... CCGCCCACGCCTCTATTGCTAGCTGCGCCTTTGGT 548 26 100.0 35 .......................... CCGGAATATGAGAATGAGAATTTTATTAGTTTTTA 609 26 100.0 35 .......................... CCGATTGCAGAATGTCGGTTTTCCACTCTAGCGTT 670 26 100.0 35 .......................... CCGTGTGTGGGCGCGCAATGGTAAGAGGTGGTGCA 731 26 100.0 35 .......................... CCGTTATACAACGCCCAGATTGGGCTAGGAGAAAA 792 26 100.0 36 .......................... CCGTTATTACTAATGTTTTAGCGTTAGCGTGCTCCC 854 26 100.0 35 .......................... CCGATTACTACAGAGATTACTGCAAAGAATACTAC 915 26 92.3 0 ......................A.G. | ========== ====== ====== ====== ========================== ==================================== ================== 13 26 99.4 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : CATCAAAAATATAAACTTATTGGTAGAGTCTCGTAGAATCTAATTTTAATTTCCATCAATTTTAATTAATCAAATAAAAACATAGTTTTATCGATTGTGATTTTAATGAAAAATAACCTAAAAAATCGGTAGAAATTTGACGGTCAATATTTTAATTATAAAACAATATGTTATAATTGGAG # Right flank : ACCGTATACTAAATTATTTATAATAGGATTTTATAAAGCTCTCGCTTGAGGGCTTTTTGTCTTAGGATACTTATCCGATTTATTATAAGTTTTGTTGAATTTGCTCTCCTGCTGTTCCTCCTTTTTGTTACTAATTCAGTTTAAAATTTTTAACAATGCTAAAACCCACTTGGTCCATATTTACTCATCAGACCTTGAACTAACCACGTTTTATTACGGTTGTGAATTTCTGTTTAATGGTAAAAAGGGTAATGTTGATTTTATTAGGTGCGGTTATATACTCAGAAAAATCAGGAACGGACATCTTGTATAGAATGGGAGTATGTCATGTTTGCTGAAAATTTTTGGATGTCATTTGCAGTGTTAGCGCAATGGTGGACGTAAAGAGTACAAAAAGCGTGTGACGTTTAATGAGAGAGGGCGATTTGCATCATCTCCAGCCGTCTATCGGTGAGGTTAATGGCGATTATTCTAATTTCCGTTACTTATAATTTACTAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 630-117 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARY01000095.1 Gilliamella apicola strain AM4 NODE_72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 629 26 80.8 35 A..........TCG.G.......... CTGAATTTGACGTAATACGTAGTGGTTTATCTCCT 568 24 84.6 35 A....T...--............... CCGTGTTTCATCAATTAATAATAGCCTAATATCAG 509 26 100.0 36 .......................... CCGACATTAATACATATGATTTAAGTTTATTCGGAA 447 26 100.0 35 .......................... CCGGCCAGGATGCGATGCGGTGAGGTTTTCAAATA 386 26 100.0 35 .......................... CCGTGTATAATGATTCTCATAGATAGGCGAGGAGG 325 26 100.0 35 .......................... CCGGTTGTTGTAACCAACATAAATAATTAGAACAA 264 26 100.0 35 .......................... CCGGCGACGGCGTCAGCAAATCTAATTTAGATGAT 203 26 100.0 35 .......................... CCGAAATACAGTTTATATATAAATGGTAATAACGA 142 26 84.6 0 A......T.....GG........... | ========== ====== ====== ====== ========================== ==================================== ================== 9 26 94.4 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GTAAAGATTAAGGAAATGGTATGAAGAAAATTTTGTTTTGCTTGTTGTTTATCCCCTTTTTTGTTTTTTGCGGCTCAGTAAAAACCGGTAACTGGATAGTTGATATCAATGAAGACCCTATTACTGATGAAAAAACAGTCAGAATCTTCACGATTGATAAAACAAAATTGAATAATGAAACTGCTACGTTTTTATTTACTTGTAATTCAGTTAGCCTCTTATCATTTGATATAAATGATTTACCAAAAATAAACGAGAGAGGAAATTCAACAAAAGTCGTATTAAGAGTGGACAAAAAAACTCCATTTGAAATGGATTGGACTAAAAAAGAGATAGGATATGAATTTTCTGATATTAATGAAATTAATAATTTGATAAAAAAAGGGAAAAAGTTAGTGGTTAGAGCTGAATATTCAAAAACTAAAGATTTTGAGTTCTCTCTAGCTGGCTTTGCAAAAGCATTTAAAAAATTGCAAAAAAATTGTTCTACTAACTAATCA # Right flank : ATCGGCGATGCGTCAATATTACATAACATTTTTTTTATTCAAAAAAATCACAATTTTATATTTTATTGTTTTTTATTTTTTAATTACATCAAAAATATAAACTTATTGGTAGAGTCT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2392-1997 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARY01000095.1 Gilliamella apicola strain AM4 NODE_72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2391 29 100.0 32 ............................. TGCCGGGAATAATTCGATGATCGCGTTCGACC 2330 29 100.0 32 ............................. CTCCTCCCGCTTTTTTATTGTAAATATCACTC 2269 29 100.0 32 ............................. AAAATAAATAAAGAATTTCGATTCATAGTTAT 2208 29 93.1 32 .T...........A............... GCAGGTGTCGCAGGTAAAGCATCGATGACTCT 2147 29 82.8 32 .T...........AT.....A.......A GATGACGACAAATCAGCTAGTGGTGCATTATC 2086 29 96.6 32 .A........................... CGTTACAAATCCCCCACATTTTTAATAGTTCA 2025 29 82.8 0 ............CA............ATA | ========== ====== ====== ====== ============================= ================================ ================== 7 29 93.6 32 GCGTTCCCTGTATGCACAGGGATAAACCG # Left flank : TTATGGTGGAGTTTATAACTTATTTGACAAAGATGTTTCAAACGCTGACTTTGGTAAAACTCTAGAAGGTCGACGTTACTTTGTAGGTACCGAGATTAACTTCTAAATAAATTGAATTAATAAATATTTTTCTGTGAAAAAAGATGGCTGCTTTAACAGCCATCTTTTTATTTATAGTAATCTAACTTATTTATAACCTAAATATAAAAGTCACTTGTTGAACCTGCCATAACGTAACCTAGTCCAATATCACATAGCATTTTTTTATTATTCAAAAAAATCACAATTCTACATTTTATTGTTTTTTATTTTTTAATCATATGAAAAATATAAACTTATCGGTGGAATCCCGTGGAACCTAATTTTAATTTCCATTAGTTTCAATTAATCAAATAAAAACATAGTGTTATAGAATGTGATTTTAATAAAAAATAACCTAAAAAATCGGTAGAAATTTGACGGTAAATATTTTAAATATAAAACAGTATGTTATAATTGGT # Right flank : CAAAATTACTACAAACCGCTCGCGTGGCGGTTTTTCATTGCCAAACTTTATTAAATAACATACCATTGCAAAAAAATAAAGAATAAGGAAATGGTATGGAAAAGATTATTTATTGTTTGTTGTTATTCCCATTTTTTGTATTTGCTGATGATTTCTATAATTGTAAATATGCAATGGGTATTGAAACAGAAGAAAATCTAAACTATTTGGCGAATGGAACAGTTCGGGTGACCAATGATAGATTTGTTGCTCAAGATTTAACACACAAGGAGCATAAATCGCCTAAATTTACAGAGTTTACAGAATTTGCAGATAATTTATCTATTGCAGAGGACTCAGAGAAAGTATATGTTCTTGCAAATGATAGAACAAAGTATGTGATTACGACTAAAAAAAGTAATCTTGTTTTTAAATGGGGTAATTGTACTCTTGATTTATCTATTGACTTCGAGAATGAAAAATTTGGCAACAAACCAGTAAATTTTTTTCCTAAGATAAAA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8365-7787 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARY01000152.1 Gilliamella apicola strain AM4 NODE_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 8364 26 100.0 35 .......................... CCGTTAGTAGAACTAAATGGTATGTTTTACAAAAC 8303 26 100.0 35 .......................... CCGTTAATAGGAAATTTAGGGCAGGATCCCGAAAT 8242 26 96.2 35 ..................A....... CCGCAACTAACAGAGCATTTTACACTAGACGAATT 8181 26 100.0 35 .......................... CCGCTGTTTCTATGTAATTTCTAACAGTTTTTCTG 8120 26 100.0 36 .......................... CCAGATGAGTTAGATCGTATTGCCTGGTGCGACAGC 8058 26 100.0 35 .......................... CCGGGCGAATGGGTAAAACTCCGGCGACTGGAGCT 7997 26 96.2 35 .............G............ CCGCTCTGCACTGCGTTTTTGATTGTATATTGTCG 7936 26 100.0 36 .......................... CCTGACGCTAATTGTGTTTGATTATATAAATATTTA 7874 26 100.0 36 .......................... CCGGTTATATATTTGTGCCAAGTTCCGCCGTTCAGT 7812 26 88.5 0 AA......................T. | ========== ====== ====== ====== ========================== ==================================== ================== 10 26 98.1 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GCTTATTGAAGAAGTTTTGTCCGCTGGTGGTATAGAACCGCCTCTACCACCTGATTATGTCCTGCCACCAGCTATCCCAGAACCTCAATCTTTAGCCGATAGTGGCTTTAGAAGCCGCTAATATGAGTATGTGTGTTGTGGTAACTGAAAATGTTCCACCTCGATTACGTGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGAGTTTATATCGGTGACATATCAAAACCAATAAGAGAAATGATATGGCAACAAATTGTTAAACTTGCAGAAGAAGGCAATGTAGTCCTTGCTTGGGCGACTAATACAGAATCAGGATTTGACTTCCAAACTTATGGCGCTAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGATTAGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAACGTTCTTTAAAAAATTAAAAAAATTGGTAGATTTTTGGGATGCCAATAAATCTAAATAAAACAACCATATATATTTAGA # Right flank : TAGTTAGATTAATTAGGTAAAGTAATGAAAGGCTTTTAGCTACAGGGTTATAAGCATATACTCTCCTTAAAGTCTTAATAACGTTTTAACTTTATTTCTTTACTAATATAGGCATATATTCACTTTTATATTTTTATGAATATAAAAAATCGAATGAGATTTATTAAAAATCTTAAATAGTTATGAAGTTCATTTTAAAACATGAAAATTGAAAGTAACTGTTAACTAAACTAATAATCAAAAATAGCGTACAATAGTGCGTTATTAAACATATGATCATCATAAATAGTTTAGGAATTTAGCATGACAGGCAAATTTATTGTCATTGAAGGTCTTGAAGGTGCGGGTAAAACGACAGCAGTTAATACCGTTGCTCGTATTTTGAATCAATATAACATTTGCGATTTACAATTTACTCGTGAACCAGGTGGTACACCCATTGCTGAAGCATTACGCAATCTTATTAAAAATGGTTTGGATGATGAACCTTTGACGGATAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2313-3014 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARY01000086.1 Gilliamella apicola strain AM4 NODE_81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2313 29 100.0 33 ............................. TGCTTCCCACTTTTCTAAAAAATGCCTGCGCAA 2375 29 100.0 32 ............................. CGGTTATGTTTAGTTAACTATTTGATTTAAAA 2436 29 100.0 32 ............................. CGCACCATACAGAAAATCGCATTCTGCACGTT 2497 29 100.0 33 ............................. GAGTAAAGGAAAATAAAATGAAATGAAAAAAAC 2559 29 100.0 32 ............................. CCAATCTGCCGGCTTTTTAAAATAAATCGATA 2620 29 93.1 32 ............TG............... ACACAGCAACAGGTACGAGCTGATTAGCACAA 2681 29 93.1 32 ............TG............... CCTGAATTTAAAGACGGTTTTCATCCGTGCGC 2742 29 93.1 32 ............TG............... GGCGCCTCTGAATCTATAGAATCATGCCACTA 2803 29 93.1 32 ............TG............... TGTGCATTGAGTTATGTTCTATGTCTCGTTTT 2864 29 93.1 32 A...........T................ TAATGAAATGTTGGCAAGTGCAGGAATTCATA 2925 29 96.6 32 ............T................ TCAACTGGACATGGTGATAATAGATTATTAAA 2986 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 96.6 32 GTGTTCCCTGTACACACAGGGATAAACCG # Left flank : TTAGTATAAAAAATCAATAAACAATTTATTTTAACTTCATGTTTATAAACAAAATACTATGTTGAGCTAACATAAACGTTTATTTTTAATATTGAGTAATAGATCACAAATAACAGCGTTTATAAAATTATTTCAATTCAAAAAAATATATTGGATTACGCAAAATTACAGAAATGCACTTACAAAAAACGAGTACTTGAGATTAATTTGTAAAAATTTTATAACCAAACTACATCCGCAAACAACTTAAAAAGTAGAGTTATTTTGATAACAGTAAAGTATTAAAAACATCTCAATAAAAATTACTGTTTTTTAACTACATGAAAAATATAAATTTATCGGTAGAATTCCGTAGAATCTAATTTCAATTTCCATCAATTTTAATTAATCCAATAAAAACATAGTGTTATAAATGCTAATTTTGATAAAAAATAGCCTAAAAAATCGGTAGAAATTTGGTGGTAAATATTTTAATTATAAAACAGTATGTTATAATTGGG # Right flank : GGGGATGCGTCAATATTACATAGCATTTTTTGGCTATTCAAAAAATCGCAATTTTATATTTCATTGTTTATCATTTATTTAATTTCATGAAAAATATAAATTTATTGGTAGAATTCCGTAGAATCGAATTTTAATTCCCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATACAGATTTTGGTAAAAAATAGCCTAAAAAATCGGTAGAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGGGTGTTCCCTGTATGCACAGGGATAAACCGCCATGAAAGAAGAAGAAGTTTCTCTTGTTTACGTGTTCCCTGTATGCACAGGGATAAACCGCGAGGCTATTTGGAAAAAGTGGCTTGAGCTAGGTGTTCCCTGTATGCACAGGGATAAACCGTCGTGGTAATTACAATTGCGTAGATTTAGAAAGTGTTCCCTGTATGCACAGGGATAAACCGGCGTCATTGATTTGAATTTCAA # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : GTGTTCCCTGTATGCACAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3280-4224 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARY01000086.1 Gilliamella apicola strain AM4 NODE_81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3280 29 100.0 32 ............................. CCATGAAAGAAGAAGAAGTTTCTCTTGTTTAC 3341 29 100.0 32 ............................. CGAGGCTATTTGGAAAAAGTGGCTTGAGCTAG 3402 29 100.0 32 ............................. TCGTGGTAATTACAATTGCGTAGATTTAGAAA 3463 29 100.0 32 ............................. GCGTCATTGATTTGAATTTCAATCATTTTGAA 3524 29 100.0 32 ............................. GAACAAAACTAAACGTTCTCCACTAAAATTGA 3585 29 100.0 32 ............................. TAAACTTGCTTTTTTTGGTGTGAATTAACTGT 3646 29 100.0 32 ............................. GCGTTTGGTAATAGTATCAAACCTAATTTGAA 3707 29 100.0 32 ............................. ATTTTATCAGAACATTTTAAACGTTCGGAATT 3768 29 100.0 32 ............................. GAGGCATTGATTAGTAGTATACTGAAATCGCC 3829 29 100.0 32 ............................. TGAGCTTCGGGAATTAGGCACGCTTCCATTTC 3890 29 100.0 33 ............................. TTTTATCTCAGGGATTGGAAACGTTGGATGAGG 3952 29 100.0 32 ............................. GGTTAAACGAGCCAAGGAGGCCGCTGATCATG 4013 29 100.0 32 ............................. TAAAAAAAATAATAAAAAACGAAATTTTAGCC 4074 29 96.6 32 .....................G....... TTAGCGCTAGGTAGATTAAAATCAGGTCAGAT 4135 29 100.0 32 ............................. ATTGCTCGTGCAAGGATTTAAGCTGATTCATC 4196 29 79.3 0 A............T.....A...T..T.A | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.5 32 GTGTTCCCTGTATGCACAGGGATAAACCG # Left flank : GAATCTATAGAATCATGCCACTAGTGTTCCCTGTATGCACAGGGATAAACCGTGTGCATTGAGTTATGTTCTATGTCTCGTTTTATGTTCCCTGTATACACAGGGATAAACCGTAATGAAATGTTGGCAAGTGCAGGAATTCATAGTGTTCCCTGTATACACAGGGATAAACCGTCAACTGGACATGGTGATAATAGATTATTAAAGTGTTCCCTGTACACACAGGGATAAATCGGGGATGCGTCAATATTACATAGCATTTTTTGGCTATTCAAAAAATCGCAATTTTATATTTCATTGTTTATCATTTATTTAATTTCATGAAAAATATAAATTTATTGGTAGAATTCCGTAGAATCGAATTTTAATTCCCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATACAGATTTTGGTAAAAAATAGCCTAAAAAATCGGTAGAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGG # Right flank : AATTGTAGACATGAACTTTAACCTTACTGAGTTACAGTTGTTTCGTATTTGTAAACAAACATTAGCCATTGCCATAGACCCGTTTAATGATTTGCGAGAAAAAACAGAATCGCCAGTATTAAAACGGTTATGCTTTATCACCATTAAAGAATTACAGGCGCACAAATGTGATTCGTCAAAACTCTTACTTTCTCAGATATCCGTTCATAACCAAATATCTATTTACATTCATTAATATAAAAAATAGGATTTATATAGTTATATTGTATAAAATATTTCCATATTAAAAATGAATATAAAGCACTTGAGAATATAGCATGATTCAACAAATAGCTGTTTTGGGTGATGTAACCAATTATGGTGGTAGGATTATTACAGCCTCAGGGAACGGTTATTGTGGTATTGATGGTATCGCCTTATTGGGTGATTTAGCATCTTGTCCCAAATGTAGAAGTACAGGAAGAATTATAGAGGGAGCAAACGATTTTGTTATCGACGGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //