Array 1 89370-89012 **** Predicted by CRISPRDetect 2.4 *** >NC_009776.1 Ignicoccus hospitalis KIN4/I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================== ================== 89369 26 100.0 46 .......................... CTAACAAGGTAATGTAGTACCAGGTGAGTCTCTCGCTTGTAGAACC 89297 26 100.0 38 .......................... ATGATCTCGGCTCCCACGCTCATCGCGAATACCTTTTT 89233 26 100.0 36 .......................... TCGACCACGTCTACGAGGACGTGAGGGAGGTGCAGA 89171 26 100.0 42 .......................... GGTTCGTGTGGCACACACAACGCGCCCCAGTATTGGTACAGC 89103 26 100.0 40 .......................... GCTGCCACGCCTCCTCTCATCGATCGACCGGGTGGTACCT 89037 26 88.5 0 ............A.......GA.... | ========== ====== ====== ====== ========================== ============================================== ================== 6 26 98.1 41 GTGGAGTCTCAAGAGAGGATAGAAAG # Left flank : GTCAACTATCATCTTGTCCATTCCTCTGGGACCCAAGCTGGTCTTCAACGCTTCGGCAATTATCCTAGCGGCTAGTATGTTGCTCCTCAGAGCCTCCCTGCCGTAGGTCCTGGTGGCGCCCTCCTTGAGTATCAGAACCGGTACACCGGCCGCCATCGCGCTCACCCACCGTGGGGTGTGGTGGAACCGGTTCTATATAAGTTTTTCGCCACCATGCTGGCCCCTTAGCCTCTCAGCATTACAAATCGCCAAACTTTTGTATTTAATCATTGCCTCTTTCACCTTCACTCACATGGGAACATCCTATGTTCGAGAGCGCACCATTACTATTCACTCTCTCAGACCCCCTTATATCTTTTCATGGGAACGCTGAAGATCATGAAGGGAAGGGGAGAGGAAATTTTTCTCGAATAAAGGGAAAAGCTTGGGGAATTGTAAACTCTCGGTAGAACGCAATTCTTTTAAGGGAAAGACCTTGGGGCTTTATATGGAAGGGCTCG # Right flank : TCCTCATCGCTCAAGGCGTTTCCGTTGGACCAGAACTAAGTACGCTTTTTACCTATCCACTTTAAACTCCGAGAACTAATTCATGATTTCGGCGAATCCTATGTTAGGCGAAAACCCCCTCAAGATCCCTAAAGATAGAAAGTTTAAGAAGGTAGAAGTGGCCCAAGCCCTTCGCTGGGGAATCATAGCCGAGCTAGACGCGATAAACTTCTACGAACAACTGGCGGAAGCTATCGAAGACGAACGCGTAAAGAAAGTTTTCCTCAACGTAGCGCGTGAGGAAAAGGAACACGTAGGCGAGTTCCTCGCGATGTTGCTGGAGTACGACGAAGAGCTTAAGGAGATGATCGCCAAAGGGTACAAAGAAGTAGAAGAGGAAGTAGGCGTCGTGCCCAAGAGCATCCCGTAAGAGACAAACCCATTAAGGCTGCTTCCGAAGCGCACGCGGGCCTAAGCGTTGAAGACTAAACCTAACGTAAGGTACTTGCTAATGTCCGTCT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGAGTCTCAAGAGAGGATAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 261008-260379 **** Predicted by CRISPRDetect 2.4 *** >NC_009776.1 Ignicoccus hospitalis KIN4/I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 261007 26 100.0 43 .......................... ACGAGGTAGTCGAGTAGCCTCGCGAGCTTTACTATATATTCAT 260938 26 100.0 42 .......................... ATTGTTTGCTCAGTCGAAACATAAATCACTTTCCTATCGTTC 260870 26 100.0 41 .......................... CCTGCCAAGCACGGCACTCCCCTTGCCAAGCTCTCCAGGCA 260803 26 100.0 40 .......................... GATCATCGGGGCGACCTCTCCGGGGTTATCGTCGGCTGCC 260737 26 92.3 41 .C..........G............. CCCAACCACTTCCTGAGCAGTTCCTCTTGGCGAGGGGTGGG 260670 26 92.3 41 .C..........G............. ACGCCCGCCAGCGCCCCTAGCTCCGCGTACTTCTTGCCTCT 260603 26 96.2 42 ............G............. ATCGGCCTTCCCTCTTTCAGGGCCCTGAATAGATCCCAGGCC 260535 26 96.2 37 ............G............. GTGACTAAGCGGTGGCACAATTATGCAGGAGATATTG 260472 26 96.2 42 ..A....................... ACGTCTTTATTTCCAATCTCTTGGGATCGAACTGGTAGTACA 260404 26 88.5 0 ..A.........G.......G..... | ========== ====== ====== ====== ========================== =========================================== ================== 10 26 96.2 41 GTGGAGTCTCAAAAGAGGATAGAAAG # Left flank : TCCACGCGAAGTGGATGCTGAAGACCGTCTTCCCCGTGCCGGGCTCCCCGACGACCGCCACCAAGAAGCCCTTGGGTATCCCGCCGGCTATCAGGTCGTCGAAGCCCTCCACGCCGGTTCTGAGCCTCACTTTCGTCACCGCTTCAGCTACATAGCTTGACCCCCGTTTTAAGTTCAGGGCGATGAGCGCCACTCCCCGGCCGGAGCGGTGACGACGAATTCCGTAAGCGAGCCCGCATAACTCATTACCAAACTTTTATATTTGTTAATTTCCTTTTTCATATTTGCCCACATGGGAACATCCTATATTCGAAAGCGCACCATTACTATTCACTCTCTCAAACCCCCTTATATCTTTTCATGGGAACGCTGAAGATCGTGGAGGGAAGGGCAGAGGAAAAATTTCTCGAATAAAGGGAAAAACGTGGAGAATTGTAAACTCGCAGTAGAACGCAATTCTTTTAAGGGAAAGACCTTGGAGCTTTATATGGAAGGCTTCG # Right flank : AAAGACCACGTTCCATTTCCATCCGGTGAACTTCCTCATATAGAATTCATTGAGGCGCGAAGAACAAAGATAATGCTCCAAAACGAAATACAAGAGCGAAGAGCTTATACTCCTCCAACATTGTGATGATCGACACAAAATTCTTCATGGGGAAGCGACCTCGAGTTCTGTTGTATAACCCCTACAGCCCCAATTGCGCTCCCAAAACCCAAGCGCCCACGGATTAGGGGTTCGAGCGGCGAAGGGCTCCGCGCTAAGGAGCTTATCACGCTCGAGGCCTTCTGAACCTTACGGTAGGGGAGCGTGAAGGTCGCGGTCGCCGCTTGTGGTTGCGAGGGACCGGGGAGCCTCGCTGAGTCCCTAGCCTCCAAGGCGGCCGAGCTCGGCGCGGAGCTCATGTTGGGCGGTTGTTGGGGACTCATGGGCAAGGTGGTGGACGAGGCCGCTAAGAGGGGAGTTAAGGTTTACATCTTCTTGCCCATAGGCTACCAGTGCCCGGC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGAGTCTCAAAAGAGGATAGAAAG # Alternate repeat : GCGGAGTCTCAAGAGAGGATAGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.69%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 290618-290976 **** Predicted by CRISPRDetect 2.4 *** >NC_009776.1 Ignicoccus hospitalis KIN4/I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================== ================== 290618 26 100.0 38 .......................... GCTCATCTTCGTGATTTGACAAACTATGGTCAAGTCGA 290682 26 92.3 43 ..A.........A............. TTCTCTAGCTTTACGATGTTTGAGAAGCTGAGGTAGTTGTCGT 290751 26 96.2 39 ............A............. GCATTAATTTCTATGTAATATTCCTCGTTATTCTCCTTG 290816 26 96.2 37 ......A................... AACAACATCACCTTAAGCAACTTGTCTATATCATCCT 290879 26 100.0 46 .......................... TTAGTAATTATTGTGACACTCTTTGTTTCAGGGTCTTTTATGAAGA 290951 26 92.3 0 ..A.........A............. | ========== ====== ====== ====== ========================== ============================================== ================== 6 26 96.2 41 GTGGAGTCTCAAGAGAGGATAGAAAG # Left flank : CCTTCTCAGCCTTGGTGCGCAAGCTGATAGACGGCACCTCCAACAAGTCCTTGGGCACCCTGTAGCCTAGGGCCTTCAGGGCCAAGGCTGCCTCGAGCTTGTAGGTTACCCCCAATACCTTGTCTATCAAGTCGTTGGGCTGTTGATCGCTGAGGGCGTGGGGCGGTCCTTCTGGCCCGCGCGACGTAAGCCTTTGTATGGCAGGCGCGTCGGTACTCTTACACGACCTTCTTCCAATATTACAAATCACCAAACCTTTGTATTTACTCATTTCCTTTTCATCTTTGCCCACATGGGAACATCCTATATTCGAAAACGCACCATTACTATTCACTCTCTCAAACCCCCTTATATCTTTTCATGGGAACGCTGAAGATCGTGGAGGGAAGGGCAGAGGAAAAATTTCTTGAATAAAGGGAAAAGTTTGGGGAATTGTAAACTCGCAGTAGAACGCAATTCTTTTAAGGGAAAGACCTTGGGGCCTTATATGGAAGGCTTCG # Right flank : GCCTTCACGGAGGGCCATTCGAGCAACGGGAGGAACGGGGTCAAGAGGAAGCAGAGAACTTGAGGGTCTTCAAGAAGCGCGTGTAGACCGGCGAGGGCTGCAACGGCCTGCTCTTGAACTCGGGGTGGTACTGGACCCCCCAGAACTCTTGGCCCTCCAGCTCCACCCCCTCCGGCACTCCCTCGCTCCACGCCGATACCCTTAGTCCCGCCTCCTCTAACTTGTCCAAGTACTTTGGGTTAACGTCGTACCTATGTCTATGCCTTTCTTTAACCAACGTCTTCTTGTAGGCCTCCCAGAGCTTGGTCCCTTTCATTATTATTACTGGCTTCGCTCCCAACCTCATGGTGCCGCCCAAGTACTTCAGCTTCCTCTGTTCGTCCAGCAAGGCCACTACGGGGTGGGGGGTGTTGGGGTCTACCTCCTCGCTGTTCGCGCCCTCCAGGCCGGCCAAGTGCCTAGCTACCTCAACCACCATCATCTGCATCCCGAAGCATATT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGAGTCTCAAGAGAGGATAGAAAG # Alternate repeat : GTAGAGTCTCAAAAGAGGATAGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 4 414304-413553 **** Predicted by CRISPRDetect 2.4 *** >NC_009776.1 Ignicoccus hospitalis KIN4/I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================ ================== 414303 26 100.0 43 .......................... TAACACCAGAAATCCCATGTCGGTCTCAGTATTATCTTTCCAT 414234 26 100.0 42 .......................... AGTACGATATCAAGAGTTCAGCTAACCCGAGAACCCCCTTCA 414166 26 100.0 36 .......................... TGTCATCAAAGGGAATGGAAGTTTAACATCGAAGGC 414104 26 100.0 42 .......................... TTACCATCTTCGCTTCTTATGACCACTCCTCCTCCGCATGCG 414036 26 96.2 37 ...G...................... TACGCGCGATACTGAACTTCGTCAACGTCGAGAAGCT 413973 26 96.2 35 ...G...................... TGCACTAGCGAGAACGCCTCCTGCGGTATGATGAA 413912 26 88.5 41 ...G........A.......A..... CTCAGCAGCTCCTCAAGTTCCTCAGGAGAGTAGACCCTGCC 413845 26 88.5 40 ...G........A.......A..... AGAACTTCTTGTAAGGCTCTTTTTATTTGTTCTAGGGTTT 413779 26 84.6 41 ...G........A....G..A..... GTCATATCGTCGCAGTGGAATATGTATATTTTTGTACATCT 413712 26 80.8 44 ...G........A...AG..A..... TAGATTCCATTCACTTCGGCCGGGAGGATCGCTGGCCCCTCTAT 413642 26 80.8 38 ...GG.......A....G..A..... CTGCCATCGCCGTCACGTTACGTACTCTTTTTTCACCC 413578 26 80.8 0 ...G........A....G..A.G... | ========== ====== ====== ====== ========================== ============================================ ================== 12 26 91.4 40 GTGAAGTCTCAAGAGAGAATGGAAAG # Left flank : GACCGGGGGAGAGGACTATCGCGGAGGGCCTCAACCTCTCAGCCGCCGAGGGCGAGAGCTCCTCCTGGCGCAAGGTGGCCACGGCGAAACCCTCTTCCATTATTATCTGTTCTACGTTGTGCACGAAGCTGTCCCTGTGGTCTACCAAGAGGACTGGCCTCAACGCGCGTTTCCTCCCGGACGGCTTCGGGGGCCCTTAACTCTGGCGCGACCGTTCTTGGCGGTTCAACAGAAGTATTATACAATTGTGAGCTCGAACTAAATAATCAAGGCTCTTTCCACCTTCACCCACATGGGAACATCCTATATTCGAAAGCGCACCATTACTATTCACTCTCTCAAACCCCCTTATATCTTTTCATGGGAACGCTGATGATCATGGAGGGAAGGGCAGAGGAAAAATTTCTCGAATAAAGGGAAAAATCAGAGGAATTGTGAACTCGGGGTAGAACGCAATTCTTTTAAGGGAAAGACCTTGGGGCTTTATATGGAAGGCTTCG # Right flank : AAAAGGAGAGACGACAAGGGCTTCAAGCTCTCCCTCTGAAGTTCCTCCCGGTGCGCGCTGTGGAGTGGTTGAACAAGATCGTCGACGAGATAATAAAGAAAAGGGGCGGTAGGGCCTTCGTAGTGGCGTCGGGGCTCACCACCTCCGGACCGGCCCACTTGGGGACCTTGAGCGAGTTCATCTACCCCTACTCCATAGTCCAAGAGCTCCGCCGGAGGGGCTACGACGCCGAGTTCGTCTTCGTGGCGGACATAATGGACGCTTTCGACGACATCCCCCAAACTCTGAAGGACAAGGAAGAGGAGCTGAAAAAGCACTTGGGCAAGCCCTTGGCGGAGGTGCCGGACCCCTACGGGTGTCACGAGAGCTACGGCGAGCACTTCCTCGCGGAGTTCTTGGAACTCATGGACAAGTTCGGCATAAAGCCGGACGAGGTGTTGAGGGCGAGCGAGCTCTATGCCCAAGGCTGGTACGACGACTACTTGAGGCTCTTCGTGGAG # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAAGTCTCAAGAGAGAATGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.69%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 5 557650-557086 **** Predicted by CRISPRDetect 2.4 *** >NC_009776.1 Ignicoccus hospitalis KIN4/I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================== ================== 557649 26 96.2 42 .....C.................... CCATGATCAGCTTTAACTACTAGGCATTTTAGTTCACCTCCG 557581 26 100.0 40 .......................... GCCACGAACGCTGGTATCGCTTCCACAAGCTTGTTCTTCT 557515 26 92.3 36 .....C.....A.............. GGTGTTCTTTCCTTCTTGGTTGAAACGCGAACTGGA 557453 26 100.0 38 .......................... GATCGTGCTCTTCTAATTAGAAGAACTTGACTAGGCAT 557389 26 88.5 46 ........C....T........T... GGGTGTTGGAGATGGAAGAGAGGAAGGTGCGCCTCTACACCGAATG 557317 26 92.3 41 ........C....T............ CTCAAGCTGCCTATCGCCATCCACCCCTTCTTCTACAACGC 557250 26 92.3 44 ........C..............T.. AGGTTAATGTAGTTGAATAGGACCAACCCGTACCACTTACTCTT 557180 26 92.3 43 ........C..............T.. AGGAGGAGAAGGTAGAAGGGCTGCCGGTAGGGGAGGAGAAGGA 557111 26 92.3 0 ........C....T............ | ========== ====== ====== ====== ========================== ============================================== ================== 9 26 94.0 41 CTTTCTATTCTCTCTTGAGACTCCAC # Left flank : TCTATTGGCGCTACGCCCTTGTTTACCTTCTCCACCTTCTTCTCGTCTATATCGATCCCCACGACTTCGAAGCCCTTGGAAGCTAGGGCGGTCGCCAAGGGTAGGCCGACGTAACCGAGACCAACGACGGCTATCCTCAAGCTCAGCGGCCTCCGGTAAGGGTTAGGAGGGGGAGGTAAAGTTGTAGGAGCCCTTGGCCGCCGTGTGGCGGGCCCGCCGGGATTTGAACCCGGGACTTCCGCGGCGGGAAACGGGCCAAGCCCCGCCTCTACGGGTTAAGAGCCCGCCGCTCTACCAGGCTGAGCTACGGGCCCGCTCCGTGGGCTTGGGGACCGGTGGGGGTTAATAAAATTTTAGCACACGTCTCGCACTTTCCTCAAGGCTTGTGGAATCTGAGGGCGAGTTCCTTATCGGGCCTTGGGAGCCTTTGTGTAGCTTGCTTTTTGTAAGCTTTATTAGGACCTTGAGTTGCGTTTCCTATTACCTTTTGAGAGAATTAT # Right flank : CGAGACCTTCCATATAAAGCTCCAAGGTCTTTCCCTTAAAAGAATTGCGTTCTACCCCAAACTTACAATTCCCCAAGCTTTTCCCTTTATTCAAGAAATTTTTCCTCTGGCCTTCTCTCCATGATCTTCAGCGTTCCCATGAAAAGATATAAGGGGGTCTGAGAGAGTGAATAGTAATGGTGCGCTTTCGAACATAGGATGTTCCCATGTGGGTGAATGTGGAAAGAGAAATGAGTAAATACAAAAGTTTGGTGATTTGTAATGCTAAGAGGCTAAGGAATCAACGTTACTCTGTATCTGAGAGTTAGTTTTGCGCGAAGGTGGAGAGCGTCGCCCGTCGAGAGCGTTAAGTAGCGCTTCACTGGGCGAAGAGTGAGAGCTTTGTAGTAATACAGAGAAGGAAGACAAGTTGATATTGAATGCTCTTAGAGCTTGGGGTAACCACGAGCCCAATCTTAGAGCTACGTAGTCGAACTTATGAAGGAACCTATGAATCGCTG # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTATTCTCTCTTGAGACTCCAC # Alternate repeat : CTTTCTATCCTCTCTTGAGACTCTAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.69%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 6 915468-915892 **** Predicted by CRISPRDetect 2.4 *** >NC_009776.1 Ignicoccus hospitalis KIN4/I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 915468 26 100.0 41 .......................... GTACTAATGCCGTATTACCAAATCTAAACGATAGGCGAGAT 915535 26 100.0 38 .......................... TGTACTTGTGCTACTGATGAAGAAGATGGGGTGAGAGC 915599 26 100.0 43 .......................... AACAGGGTCAGTATCTTCGGCAGGAACGTGTCCGTCACCTTCT 915668 26 96.2 41 .................G........ ATCACCCGCCGGCCAGGCGGCACCTTCTTCCTAGCTCTTTT 915735 26 84.6 37 ..A.........A....G..A..... TGGTAAAATCATTCCGGTGGGAATAGAAATTCGGGAA 915798 26 88.5 43 ............A....G..A..... AAGACTAGTTTTATTATATCGTCTACGTCTATTCTTAACACTT 915867 26 88.5 0 ..A.................A.G... | ========== ====== ====== ====== ========================== =========================================== ================== 7 26 94.0 41 GTGGAGTCTCAAGAGAGAATGGAAAG # Left flank : TCCGTAACGCGCCCCTCGCTAAGCTCATCAGATTCAAAGTCGAGCCCCTCTCACATGCGCTGTTGGACCTAGACCGCTTTCGGCAAAGCGGAGAGCCGTTGCGCACTCCGAAGACGTCCCTCGCGGACCAACGCGGTCGAGTCTCCGGTTTCGTTCCTAAGAGGCAGACCTTGAAGCGGCCTGCTTCAAGCTTCACTGCGTTGCTTCTTTCGTTTTGTCTAGCTACGTAGATCTAGTATTACAAATCGCCAAACTTTTGTATTTGTTTATTTCTCTTTCCACATTCACCCACATGGGAACATCTTATATTCGAAAGCGCACCATTACTATTCACTCTCTCAAACCCCCTTATATCTTTTCATGGGAACGCTGAAGATCGTGGAGGGAAGGGCAGAGGAAAAATTTCTTGAATAAAGGGAAAAGTTTGGGGAATTGTAAACTCGCAGTAGAATGCAATTCTTTTAAGGGAAAGACCTTGGAGCTTTATATGGAAGGCTTCG # Right flank : GCGAGCAAGCGTCACAAAAATAGAACCAAAATCCCTTAAGGGAATAATCAAGAAGTAACGTTCCTTAAGCTCTACACCGACGTGTCCTTGCGAACCCCTAACGTACACTTAAAGACAAATAAAGCACCTCCGTTCCTTCTCGCGAAGCAACTAAAGGGGATGCGGGGCGGAGGGGACCAAAACTTAGTACGCCTTTGGTCCAAGGCCTCACGTGAAGTTCGAAATGCTCGAAAGGGGCTCCGCGCCGACGCTGCTACTCATAGGGATTGCCTTATTCATACTTGCCATCATATCCTCGATTATATTTGAATTGCTCAGGGTCCACGAGACGCACTCAATTAAGGTCGTCCAAGGCTTGGAGAACTTCGTGCCCTTGAAGGGCTGCGACCTCCACCTCAAGAGTTACAAGTATACAACCTTGAAAAAGGTAGGAAAGGGGCTCTTGATTTTAACCTTCCTAAAGCCTTCGACTCACATAATAGTAACTGAGAGGTGCCCCC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGAGTCTCAAGAGAGAATGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 7 952490-952925 **** Predicted by CRISPRDetect 2.4 *** >NC_009776.1 Ignicoccus hospitalis KIN4/I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =============================================== ================== 952490 26 100.0 39 .......................... TGTTAAACCTAGTTCTAGCTCTCGACACAATTATGTTTT 952555 26 100.0 37 .......................... GATATCGCCGATTTACGGGAGGGAAGGAGAATTCCTA 952618 26 100.0 46 .......................... GTGAGGTGAAGGTACTGCCTGTTGGCGGAGGCCATCAGCATGTCCT 952690 26 100.0 43 .......................... TTGACGTTATATACTGTACAGAGGTGTTTAGCATGAGCTTCAC 952759 26 92.3 42 .................A..G..... TGATCAACGAGAATGTACAAAAGAGCATATAACTGTTCTAAA 952827 26 80.8 47 .......T...G..A..A..G..... TTACTTAACTATCTTTGTCTCGTTCATTTCAATGTTGCTTACCTTCT 952900 26 76.9 0 A.A...C..T...G.........G.. | ========== ====== ====== ====== ========================== =============================================== ================== 7 26 92.9 42 GTGGAGTCTCAAGAGAGGATAGAAAG # Left flank : GTCCGCCGACCGTTGCTAATCTGTAAAATATCGAATGCTTTTCAGCTTCCCTCTGGGACTCTTGACGCGTTTTCGGATTTTGTTCTGACCGTAGTGGGTCCAAAGTCCGGTACCTCAAAGCCCCGTTCCCTACGAAGCCTCTCCTCTGTCCGGTGTGGTCCTCGAGGTCCCTTACTTACTGCGTCTACCCAAGAACTTGCTCTCCTTAATTTAATATTTCACAAACATACTTTCTGTATAACTCATTACCAAACTTTTTCACTTACTCATTTCCTTTTCAACCTTCACCCACATGGGAACATCTTATATTCGAAAGCGCACCATTACTATTCACTCTCTCAAACCCCCTTATATCTTTTCATGGGAACGCTGAAGATCATGGAGGGAAGGGCAGAGGAAATTTTTCTTGAATAAAGGGAAAAGCTTGGGGAATTGTAAACTCGTGGTAGAACGCAATTCTTTTAAGGGAAAGACCTTGGGGCTTTATATGGAAGGGCTCG # Right flank : GGAAACTACGAACGCACGTGAGGCCCTCGTACGAAATTCATCACTACGTCCCCGAAGCCCGCGGCCCTCCCGCTCCCCACGCCGAAGAGCGCTGCGTGCGCTATTACCTTCTTCACGTCCTCGTCCGCCTCCCTCACCCAGAACAGCGCCGAGCCGCTGAGGGCGGGCAACCACTTACGGTCGTAGTAGTACCAGACCTTCCCGGCGCTGTGTAAGGCAGAGTGGTCCTCCACCAGCGAGCGCTCGAGCTTCCACAAAACTTCTAGATATTTATCCTTAAACAAGGAGTAGGCGTTGACTGAGAAGAGGTGGGAGGGGGAAGGCAAGAAGCGGGTCCTAAGCTCCTCTCCGGGCCCCCTCCAAGGGTCCCTTAACACTGCCGGCCCCCTGAACTTCACCCACAAGCCGCTCCCCTCCCCCAAGTCCAAGTCCACCTCTTCCACCGCCACGGTCTCTATTTCTATTACCTTCCTGCCGAACTCGAGCTTACAGTAGTCGAA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGAGTCTCAAGAGAGGATAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 8 955649-957104 **** Predicted by CRISPRDetect 2.4 *** >NC_009776.1 Ignicoccus hospitalis KIN4/I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 955649 24 100.0 39 ........................ CTTGTACTGTGCTAGCTGGGCCGGAGAGCTCAGTTGCTC 955712 24 100.0 38 ........................ ACTTGGTTGACGACCTCGTCGAGCTTGTCGTACGCTTG 955774 24 100.0 39 ........................ ATGTCGTCACAGTGAAATACATACACCTTCTGCAAATCT 955837 24 100.0 39 ........................ ATGTCGTCACAGTGAAATACATACACCTTCTGCAAATCT 955900 24 100.0 39 ........................ ATGTCGTCACAGTGAAATACATACACCTTCTGCAAATCT 955963 24 100.0 39 ........................ GTTCTTTATCATTCCATTCCTGCCATACTCTGAGAAACA 956026 24 100.0 38 ........................ CCGGTGCACCACACGTTTTCGCCTTCGACCTCGTCCCC 956088 24 100.0 37 ........................ CTGGCGTGATGACGGTCGTACGATGACTATCCTAGAA 956149 24 100.0 37 ........................ AGAGCACTATCGAACAGATAGACCTCAACGTTTTCAG 956210 24 95.8 39 ........A............... TGCTAATCTGTTCCAAGGGAACGTCGACGCCATGGCGAA 956273 24 100.0 38 ........................ TGGGTTCTTTCTGCCACCACCGCACACACCTCATGAGC 956335 24 100.0 38 ........................ CTAGTGTACGCTTCACCGTGTGAAGACATAATGAGCAG 956397 24 100.0 36 ........................ CTTTGCATTTCCTTCGGCAATGTAGCTCGCTATCGC 956457 24 100.0 38 ........................ CGAGGGAATGAGCGGAGGGAAGCGGGATGAGGAGCGAG 956519 24 100.0 38 ........................ ATTAGAAGCACCACATGAACGAATCGGTGTGCATCAGG 956581 24 100.0 37 ........................ TATGAATAACGGGTCCTCGATTACTTCTGGGTTGTCT 956642 24 100.0 39 ........................ CAATGGCTTACCCAACACGGCCTGAGCGAAGAGGTCCTT 956705 24 100.0 37 ........................ TTTGTCGAGCTCTTGCCAGGATAGACTAGGACAACCG 956766 24 100.0 38 ........................ GGGTCTGCTGGCAGATCGGCGATGTCATCGCAATGGTA 956828 24 100.0 42 ........................ TGAATGGCGGGTGCGGGAGATGGTTGAGGAGAAGATGGTAGT 956894 24 95.8 37 ......................G. TAAGTAATATTCTATTAGCATCTTCTTCAAGTTTTCA 956955 24 100.0 37 ........................ TATAAGGGCTATGGCATGATGGTAATGATGATAATGA 957016 24 95.8 41 ............A........... TCCATATCTACGCCCTTGTCATACATTTCCAAGGCCTTGAA 957081 24 79.2 0 ..........T...A..GC.T... | ========== ====== ====== ====== ======================== ========================================== ================== 24 24 98.6 38 GATTAAACGAAAGAGAACTGCAAG # Left flank : GGCAGGGAAGTTGAGCTTTGTTTACGATTTTAGTGAAATGTTCAAGCCTATGGCAATTTATGTCATGGCAACCGCGATAAGGACGTATAAAATAGAGCTTGAGGGAGACTTCTTAAACAAGGAAAGCTTACAAAAGGTTACTCAACTGTTCTACTCTATTTTCGAGAGTAAGAAGTACTCCGTCAGAAAGTGGGTCTACGCGAAGGCGTGGCAGCTCAGAGATGCAATCGAATCTGGGAAAGAGTTCAAGGCTTTCGTCTTCCGACCCTAAGGTTCGTTTAAGAAACTTTTAGGGCTCTCATCGACCCCGGCGTAGTTACTTTTTAACACTATGTTTTTCTATTCGATTTCATATATCTGGTCCGAATTCGAATCTTCGAGGGTCCCCTCTTCAAATTACATGCGTGGGAGATCCTCGACCATCAACCGCTCGGTAGACGGCGTCCCGAAGCAGTAAACTAAATAAACTCTAACTTTAGGGTGACCATGGAAGGCCAGAG # Right flank : GGCGGCTAACCCTACTAAAGCAGATTTTAAGACGACGTCACCGATCGTCTAAAAGTAAGTTAAGGGCGAACCGACCTATCGTTTTCCACGCTGTAACGCCCGTTTGTGGTTCGTACGCTCAGTTAGGTCTTTGGAACGACCTCAGAGCTCTAAAATAGTCGCGCTCACTGGTTACTTAGATGCTATCTCCTTCACCATTTCCTCGAGCTCGTTCAATTCGGCCTTTATTTGTTCAATTTTCCTCAAGAGTTCGTTAAGGTTCGGTTCCTCCTTCTTGCTGACCCTTCCTTTGAGCAAGCTCGCCAGAACCTCCTCAGCGTTAAGTTTTCCTTTAACGCTAACGCTTACCGCGTTCCCGCTGTCCGCGTCGACGAACTCAACGCTTACCAATCCCCTGGAGTCAGAGGTAGTTACCGAGAGCTTCCAATAGAAGGTCGAGTTAATTGTTGTGGGGAGGGGCTCTTGGACTTTGAGCGAGTCCCAAGCCCAGTTGGGATGAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAAACGAAAGAGAACTGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 9 1009879-1010307 **** Predicted by CRISPRDetect 2.4 *** >NC_009776.1 Ignicoccus hospitalis KIN4/I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================ ================== 1009879 26 96.2 37 ........T................. ATTCTCTTTCCTCTTTTGGGTGTCTGGGAGTCCTGCG 1009942 26 96.2 44 .............C............ AGTGTTAGAAGGTAAAGAGATAGAGATATTGAACGTTAGAGAAT 1010012 26 100.0 40 .......................... AGGAAGTGGCGAACGAGGAGGAGGCCAAGAGACTGTGTGA 1010078 26 100.0 40 .......................... TTGTGAACCCCGTTCTGGTGGTACAGGCCGAGAGCGAGGT 1010144 26 100.0 44 .......................... AACTTACGAACGGTGACTTAGGTACAACAGGAAGTCTAAGTCTA 1010214 26 96.2 42 ....................G..... AACACCACGAAGAAGTTATTGCGTAAAAAACATTACCGAAAG 1010282 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ============================================ ================== 7 26 98.4 41 CTTTCTATCCTCTTTTGAGACTTCAC # Left flank : CCCGACCCGGTGGAGGGCGAGGTAATAGTCTACGCAAGGCCCGTGGGAGACGAGAGCGACGGCAAGATCTACCCCTTCAGGGAGCACGTTGCCTACGTACCTTTCGACGAGAACAAGAAGATACCGATACCCATAAAGGTGGGGATAGTGTTCGCCTTAGGAGATATCAACAAGGCCGTGCAAGCGGGAGCGAAAGTTGCGAACCTAACCTTCACTGGGAAGTTCATCAAGATGGTTCGATACATGAACGTGGACCACGGGGTGGTCCCCGCGAGTAAGGCGTTGAAGTGCGTGGACTGCCACAGCCCGTGGAGCGCGCTGCCGCTGGAGGAGCTCGGCTACTGGTACCCGCCGATAATCTACTACGGCGCCCCCGTTATAGCCTTGATTGGCGTTGCGCTGTTGGCGCTCTCGCTTAGGAAGAAGTGAGCTTCATTATTTTTTATTTTCTTTTAAGTGGTCATTCCTTTGTTCCATTCTTGTTGCCTTTGAACGTATAT # Right flank : CCGAAGCCTTCCATATAAAGCCCCAAGGTCTTTCCCTTAAAAGAATTGCATTCTACTGCGAGTTTACAATTCCCCAAACTTTTCCCTTTATTCAAGAAATTTTTCCTCTGCCCTTCCCTCCACGATCTTCAGCGTTCCCATGAAAAGATATAAGGGGGTTTGAGAGAGTGAATAGTAATGGTGCGCTTTCGAATATAAGATGTTCCCATGTGGGCAAAGATGAGAAAGGAAATTAACAAATATAAAAGTTTGGTAATGAGTTATACAGAAGCATCAATGGGCGTCCCGTGCCCTATATTTCCGCCCGGGACCGCGGGCTGGGGAGAGAGTGGAAGTAAGGGAAGGCGACCTGGTTCTGATATACATAGACAAGAGGAGGAAGAAGTTAGTGAAAGCGATTAAAGGAAAGGTATTTGGGAGTGACTTAGGAGTGTTGAAGCTTGACGACGTAATTGGTAAGAGGTACGGCGAGAGCGTGGAGTTCAGCACGGGGGCTAGGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTATCCTCTTTTGAGACTTCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 10 1057459-1057229 **** Predicted by CRISPRDetect 2.4 *** >NC_009776.1 Ignicoccus hospitalis KIN4/I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================== ================== 1057458 27 100.0 40 ........................... TCTTCAGTCTCTCATTTATAAAGTACCAATTGTTCTTCGT 1057391 27 100.0 40 ........................... TCACGCCTACCCCCGCCGTTGATAAACCGCATTAACCCTG 1057324 27 92.6 42 .................A..G...... AGTAGTTGTCGAGGACCTCCTCTATCTTGTTCACCGCCTCCT 1057255 27 77.8 0 ..A..........G...AT.G.....A | ========== ====== ====== ====== =========================== ========================================== ================== 4 27 92.6 41 GTGGAGTCTCAAGAGAGGATAGAAAGG # Left flank : TCTCCCACAAGGCTTCGAAGTACTTGGTGTAGCGGTCGTCCACCCTGAGGACGTACAAGTCTTCAGTGACTTTGGCCACGTGGTACATTACCAACTCGTCTCTCCTCCTAGACAACGGCCTCCCGCGAGAAATTTGTTTTCATGTAACGACCCCTCGACCCGAGCCCTTCGCGGGGTTCGGAGAAAGCGTACTTCTCCGCGTTTAGTTGTAAGACAACTCCTAATTCAAATTAGTGTGTAACTCATCACCAAACTTTTCCACTTACTCATTTCCTTTTCAACCTTCACCCATATGGGAACATTCTATGTTCGAAAGCGCACCATTACTATTCACTCTCTCAAACCCCCTTATATCTTTTCATGGGAACGCTGAAGATCATGGAGGGAAGGGCAGAGGAAATTTTTCTTGAATAAAGGGAAAAGCTTGGGGAATTGTAAGTTTGGGGTAGAACGCAATTCTTTTAAGGGAAAGACCTTGGAGCTTTATATGGAAGGGCTCG # Right flank : TAGTTCTCCTAAAAGATAACGAAAAACACAACCCGAGGTTCTAATAAAGACAAAGACCACAAAAAGCGCGTTACGCAAAAGCTCCTAAGGTCCGATAAGTAACTCGCCCTCAGATTTCCACAAGCCTTGAGGAAAGTGCGAGACGTGTGCTAAAATTTTATTAACCCCCACCGGTCTCCAAGCCCACGGAGCGGGCCCGTAGCTCAGCCTGGTAGAGCGGCGGGCTCTTAACCCGTAGAGGCGGGGCTTGGCCCGTTTCCCGCCGCGGAAGTCCCGGGTTCAAATCCCGGCGGGCCCGCCACACGGCGGCCAAGGGCTCCTACGTCACCACCTCCCTCAACTCGTACACTATGCTCGGAAGCGGCGTTACGAACAACAAGGTCATGATTGCGTAAGTAGCTAAGGACACGGGCCAAGGTAAGCTGAAGGCGAGGGAGGAGCTCGCCAGCCCGCTGCCGGCGCCGTAGAGGGCGAAGGCGAGCGAGGCCTTCCCCTTCAAC # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGAGTCTCAAGAGAGGATAGAAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //