Array 1 100442-99497 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOND01000207.1 Escherichia coli 3-267-03_S4_C1 e326703S4C1.contig.206_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 100441 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 100380 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 100319 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 100258 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 100197 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 100136 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 100075 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 100014 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 99952 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 99891 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 99830 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 99769 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 99708 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 99647 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 99586 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 99525 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 117497-115943 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOND01000207.1 Escherichia coli 3-267-03_S4_C1 e326703S4C1.contig.206_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 117496 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 117435 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 117374 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 117313 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 117252 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 117191 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 117130 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 117069 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 117008 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 116947 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 116886 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 116825 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 116764 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 116703 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 116642 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 116581 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 116520 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 116459 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 116398 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 116337 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 116276 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 116215 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 116154 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 116093 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 116032 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 115971 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //