Array 1 30140-30588 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHA01000032.1 Gilliamella apicola strain Gris1-4 Gilliamella_apicola_Gris1-4_contig38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 30140 29 100.0 31 ............................. ATCAGTACCACATGGTGGTGCACAAAAAAGA 30200 29 100.0 31 ............................. GCACGATGTCGCTTACTGAAATAACAGAAAA 30260 29 100.0 31 ............................. CATATCGCCAACGAACGGGAATATATCTCTT 30320 29 96.6 31 T............................ CGTATAACTGGGCGAGTTGGCTATACTGCCG 30380 29 96.6 31 C............................ TTTAGATGAGCATTTGAAAACAAACGACAGA 30440 29 100.0 31 ............................. AATTAAGTCAATCAGTGATACAGGTGCGTTT 30500 29 100.0 31 ............................. ATTCCCAAGCCTTTTTCGATCATTACTGAAT 30560 29 79.3 0 G.................T.CCA..T... | ========== ====== ====== ====== ============================= =============================== ================== 8 29 96.6 31 AGTTTACCGCCGAGTAGGCGGTTTAGAAA # Left flank : GCATCCAATAGCTCTTCTGAAAGCCCATCGGTTTTATAATTATGAAATTGATAGCTTACATGATGATCATCAAGCCAAGTAAAAGCTTTTTTCATTGTGTTGCAGTTTTTGATACCGTAGATGATATACATAGTAGGTGATCCAACATTGAAAATAATAGCAAAGATTATAACAGTTATCGGCTTGAAGCGGCAAACTAAAGGGATTTATTTGTATTAATTCATATTAATACTCATATTTAATCTTAGTTGTTAAAGCCAAATGGTTATTAGTGAAAGTTTGAAAATTTTAAATAATTTGGATGGTGAGTTAAGAAATGAATTTTTGAACAGATAATTTCACTCATTTTAAAAAGATCAAACTATTGCTAACCCTTTTTTTTAACAATAAATAAAATCAAATAAAAACAACACACTAAAAAAGCTCTAAAAAAAAGGGTTTTCAAAAGCAAAAATCCTATTTGTCTTTTGCGAAACAAGGTTTATATTATATCGGTTTCT # Right flank : ATTAAAAAAGCCCTCAGACGAGAGCAATAGGTGTCTACTGACAGAATAGCTGGCTATGGTTATTAGCTGTGTTCAAAAATTTTATTGAACGCTTAAGCTAGTTGTCATTATCAATAGTATAAAATGATTATTAATTAACTAATTGCAGCATTTTTCAACAAAATAACTCATAATTCGATTATCGACGGTTAGTTCGGGATGAAATGAGCAAGTCAAAATGTTATCTTGCTGCGCCATTACACAATGATTATCAATAAAAGCTAGCTGATTGACTTGCTCACCAGCTTTTGCAATATATGGAGCACGAATAAATACTGCTGGAATTTGCTCACCAATAGTTGGTATATCTAACATTGTCTCAAAGCTGTTAATTTGCCGACCAAAACCATTGCGTTCAACGCAAATATCCATCAAATCTAATAATTCGACTTCGTTATGAGTTGTCGTTTTGCCACAAAGCACTTGCCCAGCACAAGTACCTAAAATTCCTTTGCCTTGTT # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTACCGCCGAGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 44-372 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHA01000037.1 Gilliamella apicola strain Gris1-4 Gilliamella_apicola_Gris1-4_contig42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 44 28 100.0 32 ............................ ACTTTATGCCAAAAGTAGCGCAACAATTCCCT 104 28 100.0 32 ............................ ACGACAACGTGGACATGGTACAGGATGCGGTA 164 28 100.0 32 ............................ TACTAAGTGATCAAATAACTAAACATACGAAA 224 28 100.0 32 ............................ TGTAACGCAATCAACTAGCTTAGAAGAAATGC 284 28 100.0 32 ............................ AATATAACTTGTAGTTTTAGAGGAGTACGCGA 344 28 89.3 0 ....................AA..A... | C [364] ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.2 32 CCTTAACGCCGTATAGGCGGTTTAGAAA # Left flank : TGTTTATCTTTATATAACAAGATTTATCAAATCTTGAGTTCTAC # Right flank : ATAGAATTAATCATATAATTACAAAAAAAACAATCGGCTGTACTGTCTGACTTACTCTGGCGTCGGGGAGCCGAAGGCCACATTCTGCAGCCAAAGCGTGGGTTGTTAGGGAATTCGCTTAAATTCCCTAACTCGGACGTGGGCACTGAGGCTATTTTATTCACCAAAGCTAAAACGTCCGAAACCACCACACCCAACCCACTCTATCCACCAACAAAAAAAAACTATTTTGACAAAAAAACGCTCTGGTAGACTATTGATTTTATTAATGTTTTTAGCTATTTTTAACAAAAACAGCCTTATAAAAACACAATAACTTATCCCTCGATATAAATATTTTTTATAACCTCAAAAAAAAGATTGAAATCGTTTGGTTGTTAAGTAACCATATGAGTGTAATGCCCATTTTTGCTAACGATAAAGCAAAATCTGACAAACTAAATAATTGATGATAAGGATCTAACATGTTTAGTAAAGATATGACTATTGCCGATTATGAT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTAACGCCGTATAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 508-1015 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHA01000045.1 Gilliamella apicola strain Gris1-4 Gilliamella_apicola_Gris1-4_contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 508 28 100.0 32 ............................ TGAGCTTCGGATACTTGCGCTGCTGTCGTTGC 568 28 100.0 32 ............................ ACTGCATCATCTCACGACGCCCCTCCAAATAT 628 28 100.0 32 ............................ TTCTAAATCAGGCAATACCTCTGCTTGTCCAC 688 28 100.0 32 ............................ AGTCACGATTAAAACCATGCTCATTTAATACA 748 28 100.0 32 ............................ ATGATGATTTATATTATACTGCTGATCAAAAT 808 28 100.0 32 ............................ TTTTTAAATTTCAGTTCAGCATCATTTGCGTG 868 28 100.0 32 ............................ TAACAGTAAACATTATGGTAGATTGAGCGTTA 928 28 100.0 32 ............................ TTTTGTTGCAACGTCACGACGTTGATGAAACA 988 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 CCTTAACGCCGTATAGGCGGCAATAAAA # Left flank : AATCCCCTAAAAACCCCTCGCAAGGCTACAGAATGTGGCCTACGGCAATACTCGTATCATCCTGATACTCGCCTCTACGAGGCCATCTTCGCTATGCTCAGATGTTCAAATTTGTTCCAGACAAATTTGTCTAACGCCGTAATAAGACAGACAACATAACCTTAAGTGGCTTTTATGAGTCACTTTTTTATAAAAAACACTGCAAAAACCACAAAAAATCGCTCCGGTAGACTATTGATTTTATTGAAGTTTTTGTCTTGTCGTTTTCAAGCTAAATCAATCACTTACACAACCTAAGCAAAGCGCCAACATAAAACAAACCAACAAAACCACGAACAGCGCCCTAATAACAACAAATTAACCGCTCTAAACCCTTTTTTTAACGAAAATTTAAAATCAAATAAAATCAACATATTAAAAAACAGCTTAAAAAAAGGGTTTTTAAAGCCAAAATTGTTGTTTATCTTTATATAACAAGATTTATCAAATCTTGAGTTCTA # Right flank : AACGCTGTTAAAACCCAATTCTGAGTTTGATTCTTGGGGCGGTGAAAAATGGGTGTTAGATGAAAATAAACAGCATCAGCACTATGTAGCTGTAGCAGCAGCACAGAAAAGACAGTTATTAAGCGAAGCTAGCTCACAGATTGATTATCTACAAGATGCAATCGACACAGAAATAGTAACTGATGAAGAAAAAGCATTGTATGCGACGTGGAAAAAATATCGTGCGTTATTAAATCGTATTGATGTTGATGCTGCGCCAGAAATTGATTGGCCAGAAAAACCATAGCAAAAATCAATTATTCTGGATAATTGTATTTGTTTTTTGCGTATAAACAGTGCAGTTATCTGGAATATCTTTATTTACAAATGACATTGCACCAATTTTTACATTATTACCTATTTTTATTTCACCACCCAAAATCACGGAATTGGCACCAATAGAAACATTATCACCAATTATTATTTTAATCGGTTCATTTGCACCACCAATTGTTATATTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTAACGCCGTATAGGCGGCAATAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 63884-63433 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHA01000040.1 Gilliamella apicola strain Gris1-4 Gilliamella_apicola_Gris1-4_contig45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63883 28 100.0 33 ............................ AGATGCACCCCTTGGGTTGAAATGGGGTATGAC 63822 28 100.0 32 ............................ GTTATCAGGTGTATCTGCCGGAAGAATGCTTA 63762 28 100.0 32 ............................ GCATACCACTGCATCATCTCACGACGCCCCTC 63702 28 100.0 32 ............................ ATTAGAGTTAGATAGTCAACCATGATCATGCC 63642 28 100.0 32 ............................ GCATATCAGGAGTTATTAAGACATTTTTATAT 63582 28 100.0 32 ............................ AAGCTGATGATGTTGAACTTTGCTTTTAATTC 63522 28 100.0 32 ............................ AAAGCGTGAGTACATTTTACAAATGCAATGGC 63462 27 85.7 0 .........A..GC.....-........ | C,TA [63436,63438] ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.2 32 CCTTAACGCCGTATAGGCGGTTTAGAAA # Left flank : TGTTCCAGACAAATTTGTCCTCCGCCGTCGCTCGGTCTTAACGCACCGTTTGTGGACGCGTTCCCGACGCACCACAAACTCGCCAAACATCCCTGTTTGGCGTGCTAACCTCGCTCTGTTGTCGGCACATTCTGACGCCGTAACAAGACAACAACATAACCTTGAGTGGCTTTTATGAGTCACTTTTTTATAAAAAACACTGCAAAAACCACAAAAAATTGCTCCGGTAGATTATTGATTTTATTGAGTTTTTTATTTTGCCGTTTTCAAAAAAAATCAATCACTTACACAACCTAAGCAAAGCACCAACATAAAACAAACCAACAAAATCACGAACAGCGCCCTAATAACAGCAAATTAACCGCTCTAAACCCTTTTTTTAACAAAAATTTAAAATCAAATAAAATCAATACATTAAAAAACAGTTCAAAAAAAGGGTTTTCAAAGCCAAAATTGTTGTTTATCTTTATATAACAAGATTTATCAAATCTTGAGTTCTA # Right flank : TAAAATAAACAAGATAATTATAAAAACATAATATCTTCCCAAAAAAGAGGGTTATGTTGTTTGTCTTGTTCCGGCGTCAGAATGTGCCGACAACAGAGCGAGGTTAGCACGCCAAACAGGGAAGTTTGGCGAGTTTGTGGTGCGTCGGGAACGCGTCCACAAACGGTGCGTTAAGACCGAGCGACGGCGGAGGGGCGCCGAAGGCCACATTCTGCAGCCAAAGCGTGGGTTGTCAGGGAATTCGCTTTAATTCCCTGACTCGGACGTGGGCACTGTAGCCATTTTGTTCCCCCAAAGCCCAAACGTCCGAAACTACTGCACCCAACCTATTTTATCCACCAACAAAAAACCCCCTATTTTGACAAAAAATCGCTCCGGTAGACTATTGATTTTATTAAAGTTTTGTGCGGTGTTTTTATCAAATAAAAACACCCCCAAAAAAACATTATTTAGCCAAATTTAAAATAGTAGCAATGACCTGCTTGCTATAAATGTCACTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTAACGCCGTATAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 1425-1096 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHA01000006.1 Gilliamella apicola strain Gris1-4 Gilliamella_apicola_Gris1-4_contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1424 28 100.0 32 ............................ ACTTTATGCCAAAAGTAGCGCAACAATTCCCT 1364 28 100.0 32 ............................ ACGACAACGTGGACATGGTACAGGATGCGGTA 1304 28 100.0 32 ............................ TACTAAGTGATCAAATAACTAAACATACGAAA 1244 28 100.0 32 ............................ TGTAACGCAATCAACTAGCTTAGAAGAAATGC 1184 28 100.0 32 ............................ AATATAACTTGTAGTTTTAGAGGAGTACGCGA 1124 28 89.3 0 ....................CA..A... | A [1102] ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.2 32 CCTTAACGCCGTATAGGCGGTTTAGAAA # Left flank : AGTGACAACGTCCGAGCAAAGGGAATTAAAGCGAATTCCCTTTGCAATTACTCGTATCATCCTGATACTCGCCTCTACGAGGCCATCTTCGCTATGCTCAGATGTTCAAATTTGTTCCAGACAAATTTGTCTAACGCCGTAATAAGACAGACAACATAACCTTGAGTGGCTTTTATGAGTCACTTTTTTATAAAAAGCACTGCAAAAACCACAAAAAATCGCTCCGGTAGAGTATTGATTTTATTGAAGTTTTTATCTTGTCGTTTTCAAGCTAAATCAATCACTTACACAACCTAAGCAAAGCACCAACATAAAACAAACCAACAAAACCACGAACAGCGCCCTAATAACAGCAAATTAACCGCTCTAAACCCTTTTTTTAACGAAAATTTAAAATCAAATAAAATCAACATATTAAAAAACAGCTTAAAAAAAGGGTTTTCAAAGCCAAAATTGTTGTTTATCTTTATATAACAAGATTTATCAAATCTTGAGTTCTA # Right flank : TAGAATTAATCATATAATTACAAAAAAAACAATCGGCTGTACTGTCTGACTTACTCTGGCGTCGGGGAGCCGAAGGCCACATTCTGCAGCCAAAGCGTGGGTTGTTAGGGAATTCGCTTAAATTCCCTAACTCGGACGTGGGCACTGAGGCTATTTTATTCACCAAAGCTAAAACGTCCGAAACCACCACACCCAACCCACTCTATCCACCAACAAAAAAAAACTATTTTGACAAAAAAACGCTCTGGTAGACTATTGATTTTATTAATGTTTTTAGCTATTTTTAACAAAAACAGCCTTATAAAAACACAATAACTTATCCCTCGATATAAATATTTTTTATAACCTCAAAAAAAAGATTGAAATCGTTTGGTTGTTAAGTAACCATATGAGTGTAATGCCCATTTTTGCTAACGATAAAGCAAAATCTGACAAACTAAATAATTGATGATAAGGATCTAACATGTTTAGTAAAGATATGACTATTGCCGATTATGATG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTAACGCCGTATAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 1609-1340 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHA01000057.1 Gilliamella apicola strain Gris1-4 Gilliamella_apicola_Gris1-4_contig60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1608 28 100.0 32 ............................ TAATGGCTTTAGCTTTGGGTCAAGCTAACTTT 1548 28 100.0 32 ............................ ACCCTAGATAATACTATCACCATAAATAGATC 1488 28 100.0 32 ............................ CGCCCACAACTGAACTGGATGGCTCTATGATG 1428 28 100.0 32 ............................ ACTATTAGTACGATTTAGGGCGTCTATATAAG 1368 28 85.7 0 ............A.......CA..A... | A [1346] ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.1 32 CCTTAACGCCGTGTAGGCGGTTTAGAAA # Left flank : CAAATTTGTCTAACGCCGTAATAAGACAGACAACATAACCTTAAGTGGCTTTTATGAGTCACTTTTTTATAAAAAACACTGCAAAAACCACAAAAAATCGCTCCGGTAGACTATTGATTTTATTGAGGTTTTTATTTTGTCGTTTTCAAGCTAAATCAATCACTTACACAACCTAAGCAAAGCGCCAACATAAAACAAACCAACAAAACCACGAACAGCGCCCTAATAACAACAAATTAACCGCTCTAAACCCTTTTTTTAACGAAAATTTAAAATCAAATAAAATCAACATATTAAAAAACAGCTTAAAAAAAGGGTTTTCAAAGCCAAAATTGTTGTTTATCTTTATATAACAAGATTTATCAAATCTTGAGTTCT # Right flank : TAGAATTAATCATATAATTACAAAAAAACAATCAGCTGTACTGTCTGACTTACTCCGGCGTCAGAATGTGCCGACAACAGAGTGAGGTTAGCACGCCAAACAGGACGTTTGGCGAGGCTATGCTTCGCTGGGAGCGAATCATAGCCGGTGCGTTAAGACCGAGCGCCGGCGTCGGGGCAGCCGAAGGCCACATTCTGCAGCCAAAGCGAGGGTTATTAGGGAATTCGCTTTAATTCCCTGACTCGGACGTGGGCACGATAGCTATTTTGTTCACAAAAAGCCCAAACGTCCGAAACCACCGCACCCAACCCACTCTATCCACCAACAAAAAAACTATTTTGATAAAAAATCTCTCCGGTAGGTCATTGATTTTATTGGAGTTTTTGTTTTACCGTTTTCAAACAAAATCAATCACTTACACAACCTAAGCAAAGCACCAACATAAAACAAACCAACAAAACTACGAACAGCGCCCTAATAACAGCAAATTAACCGCTCTA # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTAACGCCGTGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 1010-620 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHA01000081.1 Gilliamella apicola strain Gris1-4 Gilliamella_apicola_Gris1-4_contig82, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1009 28 100.0 32 ............................ ATAAAGCCATTTTTTATGATAGCTTATTAGGC 949 28 100.0 32 ............................ ATTGAATCTGGATCAGCGGTTAAAGTCGAAAC 889 28 100.0 32 ............................ GTATTTGGCATTGATGGCAGGTGAAGTAAAAA 829 28 100.0 32 ............................ ATAAATTGCAACGTACCACGTAAACGTCCATC 769 28 100.0 32 ............................ TCGCCATTCTCCTTTACACTGTTGGTGTTACT 709 28 100.0 32 ............................ TCACGCACTCAAAATTATCAAGCTGAACTAGT 649 28 96.4 0 ........................A... | AA [627] ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACTGCCGTGTAGGCAGTTTAGAAA # Left flank : AACAAAGAACCAAGTACATACTGTTTAAAATCCCAACCATCGACAGCACCACGGACTTCGTCGGCAATTTTCCAAATTTGTCGTTGTAGTTGATCGCGTTGTTGCGTTTCGGTAATTGATTTAGCGTTACTAGATGTCATATTTTTCAAATTTCCTAAATAAAAAATAGGTGCTGCCTAATTAGAAAGTAACTGATTTTTACTTTCATATTAGTCATTTTATAGCTACCTTTTATAGGTGTTATAGCATAGCTGATTTGTTGTTATTTTTCCATCTGGGGTGTTTATTAAAAACTCAGCCAATGGGTATTTTGAACTTTAAGGCTGGAAAATCTTAAAAAATAACAAAGCAACAAAATCTAAAAACAAAACCCTTTTTTTAGCTATATTTTAAAAGTTAATAAAATCAATAAATTAAATTTATCTCTAAAAAAAGGGTTTTTAAAACCTAAATACCTATTTGCCTTTTTACATACTATGTTGATAGTATATTAGCTTCTA # Right flank : ATAAAATTAATCAGATATTATAAAAAACAATGGGCTATTTTATCTGCCTTATTTCTGCGTCAGACAAATTTGTCTGGAACAAATTTGAACATCTGAGCACAGCGAAGGTGACCTCGTAGAGGGCGAGCATCAGGATGATACGAGTAGTGCCGAAGGCCTCATATTGCAGCCTTGCGAGGGGTTTTTAGGGAATTTCGCAAAAAATCCCCTAAATCGGACGTGACCACAATAGCTATTTTTATCACCCAAAGCCCAAACGTCCGAAACCACCGGACCCAACCCACTTTATGCATCAACAAAAAAACAAAGCAACGCACCCCACACCCCTAACAATTCTTTACAATAAATTAACAAAAAAAGTGGCGTATTATTTATCATCAAGTTATAATTTTTAAGATTATTCAAGCAATGAATCGCTCAAAAATAAAGCGAACGGATATAAAAATCGAGAAAAAACAGTAAAATACTTGACAAGGAAATAAAAATGCATTACCATGTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 13228-13675 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHA01000058.1 Gilliamella apicola strain Gris1-4 Gilliamella_apicola_Gris1-4_contig61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13228 28 100.0 32 ............................ TTAACGGTATTGCACAAATCAAATCTGGAATC 13288 28 100.0 32 ............................ AGTATTTTGTATGCGATCTTCTAGTTCGTTCC 13348 28 100.0 32 ............................ ATACGGAGATCTTGGTCGAATTATCAAGCGGT 13408 28 100.0 32 ............................ GATGCCTCATTCAATAGTTCGGCTAATTCGAT 13468 28 100.0 32 ............................ GTTCACAATCCATGTCGCAACAAAATCACCAT 13528 28 100.0 32 ............................ TCCGTATGTGATGCCTTTCAAAGTTGATAAAA 13588 28 100.0 32 ............................ TCGTAAGCGTCCTCCGCCGTATGTAATACCCA 13648 28 71.4 0 ...C.....T.C...A.......TTTT. | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.4 32 GTTTACCGCCGAATAGGCGGTTTAGAAA # Left flank : TAGGGTTAACGAAAGCGGAGAACCTGAATTATTTGTTGCTCATGGAAAACAGTACATGATACCGAACAAAAATGGTGAAGTTATTCCGTCCAACAAACTAAGAGGCTCAGCAGGCAGAACAATCATAAATAATATTACGCAAAATATCTCTTTCGGTGAAGGGCAAGACAATAAAGAAGCCGCTAACGAGACAGCTAGAATGCTGAAACAAGCACTAAGAAGTGTAATTCAAGAAGAACAAAGACCAGGAGGGCTGCTAAATCGGCGTTGATTTTATAGATGAATTTTCATATTTTCACCCAAAAAACTTGTCAGAAAAGGTATTGATTTTATTAATGTTTTTTTGGGCGTTTTTGGAGTTAAACTCAAAAACCCTTTTTTTAATCGCTTTTTTAATCCATTGAAAAATATAGATTAATTTAAGCACTGGAAAAAAGGGTTATTTTCGAAAAAATGGTTAAATTCTAGTTAAAACAAAAGGCTATATTTGATATAATCTA # Right flank : ATTGCACTTGGTTAATAAATTTCATACTATTAATCAATAATTATTTAATAAAATTATAGGAGATGGTATGAAAAAAATAATATTATTTTTACTGATAGCGTGTATGGGTATAACAGGGTGTCAATCGGCAAAAAGAACTACAAACATAAGTTCTAATGTCAAAGGTCTTATTTATAATTCAGTATCATCAAGTTATTTACCTAGATTAACAACTGTATCTTTATCTGAGTTCGCAGATGGAAGTGAGTTTTTAACATACAAAACGGAAACATACGAATCATTGTATGGAGTTCCTCAATTTATCGTTTTCTCAATTCCTATTAACAATATTGATGATCACAGAGTTTTACTTGAAAAGTTTTTGGAATGGGATAAGAAAGCTTTAAGCCGAGGGGATATGTTTACGAAAGAGCTCGGAAGAGCTAAGGCTTATAATGGCTATTCAAATTACACATTTCATTCAGGAAATAAAAGCAATAATTATCTGGATATTTGTTTCT # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGAATAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 14376-14704 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHA01000058.1 Gilliamella apicola strain Gris1-4 Gilliamella_apicola_Gris1-4_contig61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 14376 29 96.6 31 ............................T CTGGATATTGCAATCTAAACTGTGCTAACAC 14436 29 96.6 31 ............................T TTGATCGCATAGACCCGAAACTTGTTTAAAG 14496 29 100.0 31 ............................. TTCAAGGTAAACAAGGCGATTGTGAATACAC 14556 29 100.0 31 ............................. TTTTTGATTCTCGAACTCTTGAATTAAAGCG 14616 29 96.6 31 ............................G GTTACAGTGCCCGCAAGCCATGCGTCAATAT 14676 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= =============================== ================== 6 29 97.7 31 GTTCACCGCTGCATAAGCGGTTTAGAAAA # Left flank : TAGATTAACAACTGTATCTTTATCTGAGTTCGCAGATGGAAGTGAGTTTTTAACATACAAAACGGAAACATACGAATCATTGTATGGAGTTCCTCAATTTATCGTTTTCTCAATTCCTATTAACAATATTGATGATCACAGAGTTTTACTTGAAAAGTTTTTGGAATGGGATAAGAAAGCTTTAAGCCGAGGGGATATGTTTACGAAAGAGCTCGGAAGAGCTAAGGCTTATAATGGCTATTCAAATTACACATTTCATTCAGGAAATAAAAGCAATAATTATCTGGATATTTGTTTCTCTATGGTCGATAGTTCTGGATGTAGTGTAGAAAGCGTAGCATTTGATACAGAGAATGTAAAAAATATCCTCAATGATATTGATAGAATTAAATCAGGGAAGATAAAACATCTAGATGATTCAGTTTATAAATAAAACCCATTAGGGCTTATTTATTTGTTATTGACTACCAAAGCAATTCAAACCCTCTAAGAGGTTTTTT # Right flank : GGGCTCAGTGACAGAAAAAGATATAGCAGACGGATTACCGCCGAGTAGGCGGTTTTTTATTGCTCTTAACATAATGATCAAATAATATTAACGTAAAATTTAATATAAAATAGGATTATTATATGTCTAGCATTGAAGAAGATTTGCTTGAAGAGTGTTATTTTCCTAGTTCAATAGAAATAACGGAAGAAATTCCTAAGGGGATAAAGCTTGAAATAAAAAAAATTCAAGACAGGCAAAAATTAATGATTCGCCAAAAGTCTGCTTGTGATGTAAATCTGAGTGAGCCTTATGAAATTTTTAATGTAGAAGATGATTTCATTGATAGGTTGTGCATTTTGTTAATAAGAGCATTTAATTGTGATTGTCACATTATTATGTCCAAAATAAAGCAGATCAATATACATGTCTTGGGTGAAATGATAGAAAAATCATTTTATGAATTAAACGGATTGGGTGAATTTAAACAAAACTTTTTCAGTGTATCTATTTCGTTTGAG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCTGCATAAGCGGTTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16973-16583 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHA01000085.1 Gilliamella apicola strain Gris1-4 Gilliamella_apicola_Gris1-4_contig86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16972 28 100.0 32 ............................ CCTCAGGTGCTGGAATACCGCATCCTGTACCA 16912 28 100.0 32 ............................ AGATCCTTTGCACCGCTTGCATTCAACGTATA 16852 28 100.0 32 ............................ TTTAGCGTGTTTTTTTGCTCTATCCAAACAAT 16792 28 100.0 32 ............................ TCAACAAAAAAGGCAAATTTAACGCCGTTCAA 16732 28 100.0 33 ............................ TGCAACAATTTGACAGCTCTCAAAATCAAACTT 16671 28 100.0 32 ............................ ACTATTAGTACGATTTAGGGCGTCTATATAAG 16611 28 85.7 0 ............A.......CA..A... | A [16589] ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.0 32 CCTTAACGCCGTGTAGGCGGTTTAGAAA # Left flank : CTCAGATGTTCAAATTTGCCTCCGCCGTCGCTCGGTCTTAACGCACCGTTTGTGGACGCGTTCCCGACGCACCACAAACTCGCCAAACTTTTCTGTTTGGCGTGCTAACCTCACTCTGTTGTCGGCACATTCTGACGCCGTAACAAGACAACAACATAACCTTGAGTGGCTTTTATGAGTCACTTTTTTATAAAAAACACTGCAAAAACCACAAAAAATCGCTCCGGTAGATTATTGATTTTATTGAAGTTTTTATTTTGCCGTTTTCAAACAAAATCAATCACTTACACAACCTAAGCAAAGCGCCAACATAAAACAAACCAACAAAACCACGAACAGCGCCCTAATAACAACAAATTAACCGCTCTAAACCCTTTTTTTAACGAAAATTTAAAATCAAATAAAATCAACATATTAAAAAACAGCTTAAAAAAAGGGTTTTCAAAGCCAAAATTGTTGTTTATCTTTATATAACAAGATTTATCAAATCTTGAGTTCTA # Right flank : TAGAATTAATCATATAATTACAAAAAAACAATCAGCTGTACTGTCTGACTTACTCCGGCGTCAGAATGTGCCGACAACAGAGCGAGGTTAGCACGCCAAACAGGACGTTTGGCGAGGCTATGCTTCGCTGGGAGCGAATCATAGCCGGTGCGTTAAGACCGAGCGCCGGCGTCGGGGCAGCCGAAGGCCACATTCTGTAGCCTTGCGAGGGGTTTTTTAGGGGATTTCGCAAAAAAATCCCCTAAATCGGACGTGAGCACTGAGGTTATTTTATTCACCAAAGCTAAAACGTCCGAAACCACCACACCCAACCCACTCTATCCACCAACAAAAAAAGAACTATCTTATAGCAACTACGTTGACTTTTTTTACAAAAAAGCAAGGTTATAAATCTTTTTATCAACTTTTTTGATTAGTACGTTAACGTTAAATTAACTTTTCACTAAAAATCTAAAAAATATCACTCGGTAGCCACAGTAAAGCGTTGTTTAATATGTTTA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTAACGCCGTGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //