Array 1 510229-509164 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXSW010000002.1 Escherichia fergusonii strain RHB32-C07 RHB32-C07_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 510228 29 100.0 32 ............................. TCTCTCTTAGTTGAGGGTTAATTGGGTGGTGC 510167 29 100.0 32 ............................. GGGATTAGCTTATATAGATGTGCAACACCCGG 510106 29 100.0 32 ............................. TGGGAGACAATCGCCATTCCCCGTTATAACGA 510045 29 100.0 32 ............................. GGACAACATCGTTGAACGTATCACTGCCACTC 509984 29 100.0 32 ............................. TGTGCATTTTCATCTTTAGTTCTGTGTGTTTT 509923 29 100.0 32 ............................. AATATGGACGATGAAAAAATAAGAGAGGTAAT 509862 29 100.0 32 ............................. ATACTCACAAAACATTTTAATTTGTGGGTAGC 509801 29 100.0 32 ............................. GATAATGCTGAAATTGGGGAGGTAATTTCTAA 509740 29 100.0 32 ............................. GAGAAAAACGCAACAAAAATGAGCTACGAAAC 509679 29 100.0 32 ............................. ATTGATTTAAAGCGGGTGCACGTGCACCAGCA 509618 29 100.0 32 ............................. CAACTGGCGAAATACAGGACGAGTGGAAATTC 509557 29 100.0 32 ............................. TACAGGTAACTCCCAGTCATTGCGACATGTCA 509496 29 100.0 32 ............................. GTAGTGGTCGTCATTAGACGAGTGACTGAGAT 509435 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 509374 29 100.0 32 ............................. TACCCCGAAATTAATGGCGATGGGGCGTTTAC 509313 29 100.0 32 ............................. ACATTGCTAACTACAGGCACCGTTTAAACAGA 509252 29 100.0 32 ............................. CGTGAGAAAGGGGGTCGATACATATATCTCGT 509191 28 86.2 0 ......................-.CT..C | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGGCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACATTGGGCGATATCGGTCACCGGGGGCGCGGCGGGTGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTCCTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAGTTTCAGACCTGGGGTGAGAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACTCCTCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 525965-525187 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXSW010000002.1 Escherichia fergusonii strain RHB32-C07 RHB32-C07_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================= ================== 525964 29 100.0 32 ............................. ATCGGCGAGGTTGTGCAGGGTATTTTATCGTG 525903 29 96.6 32 ............................T GGTGATTGGCGGTATTGGCTCAACGCGGGCAC 525842 29 100.0 32 ............................. CTTGGACGTATCAACTCTTCACCCAAGCCCAT 525781 29 100.0 32 ............................. AGGGATCGGTATATGCCTACGGCGCAACGCCG 525720 29 100.0 32 ............................. CTTTTATTACGTTCGGCGACCGTGCAATTGCC 525659 29 100.0 49 ............................. GTCTATATGCCGAAGTAAGCAATATGCCGAAGTAAGCAATTTAGTCGCA 525581 29 100.0 32 ............................. GGCAATATGTTTTACACGCCGCAGGTGATGCG 525520 29 100.0 32 ............................. CGCCGGTTTTAATAGCTGTTCACCCCAGCCCA 525459 29 100.0 32 ............................. ATGGCGCAGGGGTTCGTTCAGTCCAGTGTGCC 525398 29 100.0 32 ............................. CGTGTAGTAACCGTCTGAAGTACGTGGCGCAT 525337 29 96.6 32 ............................A TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 525276 29 93.1 32 ................T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 525215 29 75.9 0 ........A..T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================================= ================== 13 29 97.1 34 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTTGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAATAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATTA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 249666-250895 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXSW010000003.1 Escherichia fergusonii strain RHB32-C07 RHB32-C07_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 249666 28 96.4 32 ................A........... GAGGTTCGGGCTGTATCATTAAGTGGCGGCGT 249726 28 96.4 32 ................A........... GCCTGGTGATTGAACCGGTTGAGGCGCTCAAC 249786 28 96.4 32 ................A........... AGTACGGGTAGGATATTTTGCGGGCACCACTC 249846 28 96.4 32 ................A........... GCGCTGCGTCAATTGACAGGCTATAGCCAGAT 249906 28 96.4 32 ................A........... AGAAATAACAATTCATGATTGCTGGGGCGATA 249966 28 100.0 32 ............................ GGAACAGTGGCCCGTCACAACGGCCCGGTTGA 250026 28 100.0 32 ............................ AGGAACACAAACGAGCCGAAATTGTTTGAGAT 250086 28 100.0 32 ............................ TGGCTCAGGTAAAGGCGTCAGCGCGGTAGTCC 250146 28 100.0 32 ............................ AATTTCGGCATCCAGTTTCACACGAGCAGGTA 250206 28 100.0 32 ............................ TGTAGAACACCCTGCCGACAACGCCGACAATA 250266 28 100.0 32 ............................ AGATAAACCCCAACCTGGCTGGCGGTATTTTT 250326 28 100.0 32 ............................ GATACGAGCCAGAGGAAAAAATGGAACTTTTA 250386 28 100.0 32 ............................ GCAGCACAGGCCGAAACAATTGTATTCGCCTT 250446 28 100.0 32 ............................ TCATGACTTTAAAGGGGGTGACATATAAGGTT 250506 28 100.0 32 ............................ GGCATGTCCAACGCCGCCAGTGCTGTTAAATC 250566 28 100.0 33 ............................ GCAAAAAGAGCGGCCGGCCGTTGTCACATGAAT 250627 28 100.0 32 ............................ AACACAGACACCCGCCCCGGAAGCGGTGACAG 250687 28 100.0 32 ............................ TTTCCCCGGCATGTTGTCGCACCGCGTAAATC 250747 28 100.0 32 ............................ GTGATCCGGGCAACACCACCAGACGTTGAACG 250807 28 100.0 32 ............................ ATTAATGCTCATACTCGATGTAGGTAAAAGCT 250867 28 92.9 0 ....................T...C... | C [250890] ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGTTCATCGTCGAGTTACAGGTTCAGTTGGATCAGAAAGGGGTTTCCCTGGAAGTGAGTCAGGAAGCGCGTAACTGGCTTGCTGAGAAAGGTTACGACCGGGCGATGGGCGCACGTCCGATGGCACGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGTTCGCTGGTGGATGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGATGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGTTCTCAACTCCGAACAATTAGCTGTAACACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGGGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGAATGGGAACTTCCGTTACTCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGACAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 259956-260703 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXSW010000003.1 Escherichia fergusonii strain RHB32-C07 RHB32-C07_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 259956 28 100.0 32 ............................ GTCCCTCGATTCACACTCAAGATCGAGACTAA 260016 28 100.0 32 ............................ TGACACGTGTCAACAACGTGCTTACATAATTT 260076 28 100.0 32 ............................ GAACACCCACGCATCGCCGGACACCCGCGCAT 260136 28 100.0 32 ............................ AGAGCCATATGTAGCCATTCCCCGTCGTCCTG 260196 28 100.0 32 ............................ CTCAGCCATCCAGTAAATTCTGAACTCTGCAA 260256 28 100.0 32 ............................ GGCTTAAGGGCAAAATTTTTTGGGGGTCTTAT 260316 28 100.0 32 ............................ GTACGGATATTTCTCCGAACTGAATTTTAAGC 260376 28 100.0 32 ............................ AGTGCCGCCGCCCTGTTTTGAGCCGGCGAGAA 260436 28 100.0 32 ............................ GAATGTAACCAAGCCCACTCATGTTCATTGTT 260496 28 100.0 32 ............................ ATTCGCGCGATTTCTGTCGCCTGTTCAACTTT 260556 28 100.0 32 ............................ GAGGACGCTGTATTCGTCGGCAGTTGGCAGCA 260616 28 96.4 32 ..........................G. AGCAAGCTGTCTCGCCCCTTCGGGCTTCCAGC 260676 28 85.7 0 ..G.................T..TC... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTTATGTGCTCCGTGACTGACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAATCGACCCTTTTATTAGGGTGAAATGTAACTCATTGATTTTGTTTATTTCTTTTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAATACTCCATCCTGGAATATTTATTCCCCGTAACTCTCAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACGCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //