Array 1 60349-58754 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMVA010000006.1 Flavonifractor plautii strain D31t1_170403_E8 NODE_6_length_195171_cov_14.668, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 60348 33 100.0 37 ................................. GGTTATGTCAAGATTATCCGTTGACCAATGGCAAATG 60278 33 100.0 36 ................................. GATTCCACCCCTTGAGCTTCCACAGGACAAGCAGGC 60209 33 100.0 34 ................................. AACGGCGTCCAGTCTCAGATGTGCAACATGGCCG 60142 33 100.0 37 ................................. AGCCCTGGCAATACGGTCACGGGGAAACAAAGGCAAC 60072 33 100.0 34 ................................. ATAGACGGCCCGGTCAGAGGCCAAGCGGAAGTCG 60005 33 100.0 35 ................................. CGCCCGCCTGGCCTGGAACACCCGCACGCCGATTC 59937 33 100.0 35 ................................. AGAGGTCTGAGCGTCCAGAGTGGCGGTCAGATAAC 59869 33 100.0 35 ................................. AGAGAAGGGGATTATGGCCGGCCGGGATGCCGATG 59801 33 100.0 34 ................................. CTTTGGGGTATCCCCAAATACACACCCGTTGTCC 59734 33 100.0 33 ................................. TTGCGTTGGCAATAAAAGCATCCATAATAAGCG 59668 33 100.0 37 ................................. GTTTGGCGTCATCTTGCGCCCTCCTCCCAATTTGCAC 59598 33 100.0 34 ................................. GGCCCCGTGCCGATTTTGAACCATGCGGCGGGGC 59531 33 100.0 34 ................................. TTCAGCGACGCCCATCCTGTGGGTGACGGCACCG 59464 33 100.0 36 ................................. GTAAGGAGGCCCTGCTCCTGCTCAATGATGACATTG 59395 33 100.0 37 ................................. CCGGAGGAGGGCGAGGACGGCAAGATCTATGTGGCCG 59325 33 100.0 34 ................................. TAGAGCTTTGCTTTATGAACCTCGTACCGGGCTA 59258 33 100.0 34 ................................. TCCAGGATGGCGCTCTGGCCCTCTGCGAGCAAAT 59191 33 100.0 37 ................................. AATGGCGTCCAGTCTCAGATGTGCAACATGGCCGCTC 59121 33 100.0 33 ................................. CGCCACCCCTCATTGGTGCAGACATACCGCCGC 59055 33 100.0 33 ................................. CCAAAGAGCGGTTTTTTGTCAAGACACCGAAAA 58989 33 100.0 33 ................................. TGGTCAACAGTGGGAGTCAGGAAGCCGCTGCGG 58923 33 100.0 38 ................................. AGTGAGAAATACGACATCACCAAGCATCCCCGGTATAA 58852 33 93.9 34 ............A............G....... CAGCGGCTGGACCGCGGCCACATGGAGTATGTCT 58785 32 93.9 0 .................-.............C. | ========== ====== ====== ====== ================================= ====================================== ================== 24 33 99.5 35 GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Left flank : TTGGACATTCTCTTGAAATGCTTTTATGGTGGATTTGGTGGAAGGCCGCAAATCCAAGCGAAGCGGGGGAATTGGGCGATTCTTGCATAATTCCAACTGCCTGATCAGACTATTGGATTTTGTCACCTGATTCAACATGATTTCAGCCTTTGTGAGTTCTGCCATACTATTACCGCCCTTCCATAGTAGACAACAGCCCTTCCAGCTCCACCAGCTTCTTTTCATATTCGTCTGTCTTAATGGCCGCAAGAGCGGCATTACAGGCATAAAGAAGGGTGTTGGCTCTCTTGGGGTCAATCTCATTGTTCAGGGCCATATTTGCAACCCTTGAAATGGCCCGGCGTATATCTGCCGGGGTAGATAGTTTTAGCGTTTTGCGCCGGGGCATAGTGTTTCACTCCCTTTCTAAAAGATCAAGGCCATCCACAGAAGCAAAGATTTCTATAATTCTTTCTTCATCTGGATTTCCATAGCGGAGGACCGGCGTGCATCTGCGGGGA # Right flank : GTCTTACAGGGGCGCCTGGTCAGTTTGCAGGAGACGCCGCATAGGGGCGCGGGTCGATTCAAATTTTCACCCCGCGCCCCTGCTGTTTGCGTTTCTTTTCGTTGACTGGTATAGTAGGGAATGATATAATAGGATGATTATGACAAAAACTATGGTGGGAAGATCATATTATGTGGATTTCAAGTGACTGGAAGGACTATGAGCTGCTGGACTGCGGCGGCGGCGAGCGTCTGGAGCGCTGGGGCAAGTATCTGTTGGTGCGGCCCGATCCTCAGGCCATCTGGCGTCCGGAGGGGCGGCATCCCGGATGGCGGAGGCACGACGCCCGGTACCAGCGCGCCTCCACCGGAGGGGGCCAGTGGGTCAAGAAGGAACTGCCCCAGCGCTGGACATTGGGTTACAAGGGGCTGACCCTCAACATCAAGCCTATGAACTTCAAGCACACCGGCGTCTTTCCGGAGCAGGCGGCCAACTGGGATTTCGCCATGGAGCGCATCCGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 62757-62252 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMVA010000006.1 Flavonifractor plautii strain D31t1_170403_E8 NODE_6_length_195171_cov_14.668, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 62756 33 100.0 35 ................................. CGCAAGAGTTCGAACAGGATAATTCGAACCACCAG 62688 33 100.0 35 ................................. ATTCTTGGCGAATGGGCATTTTCAGATGGTGTGAT 62620 33 100.0 34 ................................. TGCTCAGTGTTGAGACCGAAGAAGCCAGAACGCA 62553 33 100.0 35 ................................. CCACACCCTCCACCTGACAGCCTCAGTCGTTAGCG 62485 33 100.0 33 ................................. AGAATAGGCTGCTCACCGATATTAGCGAAGACG 62419 33 100.0 33 ................................. TAGGGATAAAAGAGAACCCACCAAAGTGGACAT 62353 33 100.0 36 ................................. GCCGAGCGTCATTATATCATACCTCCTTAGTGGTGG 62284 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 8 33 100.0 35 GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Left flank : GGACGCCTATCCACCCTTTTTGTGGAAGTGAGGCCATTATGCTGGTTTTGATTACCTACGATGTCAATACAGCGGATGCCGCCGGGCGCAAACGCCTGCGGCAGATCGCCAGGCAGTGCGTCAACTACGGCCAGCGGGTTCAGAACTCCGTCTTTGAGTGCAAGCTGGATCCGGCCCAGTACAAGCTGCTTCAAGCCAAGCTGTGTGCGATCATGGATCCCGAACGGGACAGCCTCCGCTTTTATTCCCTGGGAAATCGCTATGAGCAGAAGATCGAACACTTTGGCTGTAAGCAGACCTACCTTCCAGACGAACCTTTGATTTTGTAGCGTGCGAAGTCCAAGATGACACGCCTTCTCCGGCCGGTTCGCACCCAAAAAGCATAAAGGAAAGCTTAATGGAGCATAGGCGCGTTTGTTTTTGTATGCTCAGCCTTCTTCCCCTTGTGCAAATAAGCAAATTGAGCCAAGCAAACTCTCTGCTCTTTAGTAAAGTTTGCT # Right flank : GCCGAGCGTCATTATATCATGAATTGTTCAGTTTTTCACTGAATTTTTGAGCGTTATTCAGCGCCGCTAACGCTTGCAGTTCAAGGAAGTTCAGTATTTTAGCGTTTGTGGGAACCGCCCCGTTTTAGGGGGTATTAGTAACACAAAAGCAACACAGTTTTTCCCTTGAAAATTAACTTTCAATCCCACCGAACAACGGCCATAACATCTGTTTTCTTCAGGGGTTCCCGGCAAGCTGGGCAAAGTATATCTTTCCCGCTCCTGATCCGGTGCATGGTGGCCCCACAATCACACCGCTGAAGGATTGGGACACGGACAGGGGCCTTCACAGTAACCGCCAGACGGCTTTCCAGCTTGCCGCAAGCCCTGCATTGGTACACTGACCGTTGAACGCTCACAGGGGCTTCAGGATGGGCTACAAGGGCCGCTTGTGCCTTGGGGGCCATAGATACCCGTCAGAATACTTTCCCGCTCCATATCGGCTTCCACAGGGGACATGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //