Array 1 131724-131456 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGQ01000006.1 Gilliamella apis strain M1-2G Gilliamella_apicola_M1-2G_contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 131723 28 100.0 32 ............................ ACTCAGGTATGCACCACTCAGGTATGCATCCC 131663 28 100.0 32 ............................ AATCATCGATAAACGGCGAGCCAGTTAATTTT 131603 28 100.0 32 ............................ CGATGATGTCGCCTGGTAAATGTCTGATACCC 131543 28 100.0 32 ............................ ATCACTAATAAAAATGCCAGAACAATAGCAAT 131483 28 92.9 0 ....................TA...... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : CTGAGTGAGGTTAGCATGGCAAACATGGATGTTTGCCAAGGCTGTGTTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAAAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAAAAATAACCGCAAAACAACAAAACGTCCGAAACTAAAACAACCAAAAAATTTTGAGGAAAGGGGTTTTTTAAAGCCAAAATCCCACCAATAAATCGTTAACGCTAGTTATAACATCAGCTAGTAACCAAAAAATTTGAGGAACGGGGTTTTTGAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTGACTTAAAATAAAATATTTAAAAATCAATATATTAAAAAATAGCTCAAAAAAAGGGTTTTTATTGGTAAAAATAGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATCGGATTCTA # Right flank : TATATAAGTGGCGGTATAGGTAATATCAAGTAGTACACCGCTTATTGAGTAGGTTAAAAATAGTGATTTTTAAAGAGGGGGAATAAAGGGTCTATTATTTCTAATAAGCAGCAAATAACCGATAATATAGCCAAGTCTCCAGCCAGTTATCGAATAGGTTTTCGATAGTGAGCTACAGCAAATTGTTCGCTCTTTCATATTAGGGAAACTGGCTAAATAAAGATGTTGATGTGGTGCATAAACCATATGCTCATAAACTTCATCGGTAATCCTTGTGACAAATTGATTGCTTGATATTGATTAGCGATCCGAGTCATCCGACGGATAACTGAATCAGAAAAGTGATCGAGTCGATTGGCTAATTTATGCATTGTTTTTTTTGTTTATTAAAATTATGAAGCAAGTGATTATAATATAAAAACTTAATTTAGCTGTTAAATAATATATTTATATAGAGTTATATTTTTTTCTTATATCAAAGTTAATAATTGATATTAGTT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 137204-136754 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGQ01000006.1 Gilliamella apis strain M1-2G Gilliamella_apicola_M1-2G_contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 137203 28 100.0 33 ............................ ACTCCCCAGTTATTGTGCCCGCTAGCCACGCAT 137142 28 100.0 32 ............................ TATAGCTAGAATGTTATATGAAGATTTGTATT 137082 28 100.0 32 ............................ ACCAAAAATATCTAAACGCGCGTGCGCGCGAG 137022 28 100.0 33 ............................ AGCAATATTGATTACCTTTAAATTATTTTCATT 136961 28 100.0 32 ............................ TCTGTGGCGTGTGGGCAAAAATTAGGGCTAAA 136901 28 100.0 32 ............................ TTTGGATGAACTTAGACCGCTATTATTCAGCT 136841 28 100.0 32 ............................ TCTAAAAAAATTACTACCAGATTACAAAAAAA 136781 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : AAATTAGCTTGCTATAAACATAAACGTTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACATTCGCAACGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAAGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGACCGAACGCAGGCGGAAGGCAGTCACATCATGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCGCCGTATAGACATAACCGCAAAACAACAAACGTCCGAAACACAAACAACCAAAAATTTTGAGGAGAGGGGTTTTTGAAATCTAAAAACATCCTATTACTAACCCTTTTTTTTGACATAAAATAAAGTATTTAAAAATCAATATATTAAAAAATAGCTCAAAAAAAGGGTTTTTATTGGTAAAAATAGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATCGGATTCTA # Right flank : TACACCGCTTATTGAGTAGGTTAAAATGGTGATTTTTAAAGAGGGGGATAAAGGGGATATTATTTCTAATAAACAGCAAATAACCGATGCTGTTTTCGAGCTATCAGTGTTCTTCTTTACAAAAGTTAACAATTAAACCGCCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTATGCCATTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACGCAACACGCAACACGCAACCTGCCCAACCTATAAATTCACCTCTCTAAAGTTAAGCGCACATCGTTCATTATTTAACCGTAGTTTATTCTTTCAGCAATTTCCGCAATTCCGGCAAAATTTTTCAAAATTTCTTGGTTTAACCTTTTTATCTCGGCCGATGGTTTTGGTATTAACTGTGATTGTTTTACAGTCTATCTCTTTCTCTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 691-897 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGQ01000001.1 Gilliamella apis strain M1-2G Gilliamella_apicola_M1-2G_contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 691 28 100.0 32 ............................ GTTCGCGTCAGCAAACGAAAGCCCCAATTCTT 751 28 100.0 32 ............................ GCTAACGCATATTTAGATGCACCAAAAAGCGT 811 28 100.0 32 ............................ ATGATAGAAAGCCATTGGTTAAGCTCCTTTTT 871 27 92.9 0 ....................A..-.... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTTCACTACCGTGTAGGTAGCTTAGAAA # Left flank : ATCAGCTATTACTGATAATAAACGTTTATTTTTATAAATTAGTTTAGTGCTTCTTATTTAGCGACATTCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGCCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAACAACCACAAAACAACAAACGTCCGAAACTCAAAGAATAAAAAAATTTGAGGAGAGGGGTTTTTGAACCTTAAATTCCTACTTATTGCTAACCCTTTTTTTTTAACTTAAAATAAAGTATTTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTATTGGTAAAAATGGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATGGGATTCTA # Right flank : ATATTAATTATTTCTAAAAAGATTAGGAAAAATGAAGTGACCCCATAAAGTTGGTCACTTCACTAATTATGAACGGTTTTTTATTATTGGTTAGATAATTTTACAATTATCCTTGGTATTTTTTCATGACAATTGACGCATTAGTACCGCCGAAACCAAAGCTATTAGACATTACTGTGGTTAATTCACGTTCGGTTGGCTCGGTAATAATATTCATGCCTACTGCTTCATCTGCAAGTTCGTCAATATTGATACTTGGTGTAATAAAGCCGTGTTCAAGCATAAGTAGTGAATAAATCAATTCTTGTGCACCGGTGGCACTTAATGAGTGACCAGTCATGGATTTAGTTGAGGAGATAGCCGGGATATTATCACCAAATACTTGTTTGATTGCCCATAACTCTTTGACATCACCAACTGGCGTTGAGGTACCATGAGTATTGATATAATCAACTGGTCCATCAAGATCTTGAATAGCAAGCTGCATACAACGCATTGCC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTACCGTGTAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 308574-308426 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGQ01000001.1 Gilliamella apis strain M1-2G Gilliamella_apicola_M1-2G_contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 308573 28 100.0 32 ............................ CTCAAATATCAATCATTCTATGTAAATCCAAA 308513 28 100.0 32 ............................ ATACGAAATGACATGGAATGAAGCAAATCAAA 308453 28 92.9 0 ....................TA...... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 97.6 32 GTTCACTGCCGTGTAGGTAGCTTAGAAA # Left flank : TTTAATTTAGCGACATTCGCAACGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGAGCGTTAAAAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGATTGTAAAGAGGGTTGGCGCCAACCCTCTTAACTCGGACGTATTCACCGTATAGAAATAACCACAAAACAACAAACGTCCGAAACTCAAACAACCAAAAAAATTGAGGAACGGGGTTTTTAAAACCTAAATCCCGCCAATAAATCGCTAACGCTAGTTATAACATCAGCTAGTAACCAAAAAAATTTGAGGAACGGGGTTTTTAAAACTTAAATTCCTACTTATTACTAACCCTTTTTTTTAACTTAAAATAAAATTATTAAAAATCAATATGTTGAAAAATGGCTCAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTTTCTTTTTGCCAACTGCATTTATAGTATACTGGATTCTA # Right flank : TATAGTAAGTGGCGGTATAGGTAACATCAAGAAGTACACTGCTTATTGAGTAGGTTAAAAATGGTGATTTTTTAAGAGGGGATAAAGGGGATATTATTTCTAATAAACAGCAAATAACCGATGCTGTTTTCGGGCTAGCAGTATTCATCTTTACAAAAGTTAACAATTAAACCGCCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTGTGCCATTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACACAACACACAACACACAACCTGCCCAACCTATAATTTCACCTCTCTAAAGTTAAGCTCACACCGTTTATTATTTCACAGTAGTTTATTATTTCAGCAATTTCCAAAATTTCCGCAATTCCGGCAAAATTTTTCAAAATTTCTTGGTTTAGCCTTTTTATCTCGGCCGATGGTTT # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 477683-477415 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGQ01000001.1 Gilliamella apis strain M1-2G Gilliamella_apicola_M1-2G_contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 477682 28 100.0 32 ............................ GACCAGGATAGGCACCATGTCGGCCTTAATAC 477622 28 100.0 32 ............................ AGTGCTCATACTAAAGGGTTAGCCGTTGATTT 477562 28 100.0 32 ............................ TAATTATAAAGATTTGGCAACCATGACTAATA 477502 28 100.0 32 ............................ AAACAAGAAATTAACAACAATCCAAATTTTAA 477442 28 89.3 0 ...C...A....G............... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTTTACTGCCGTATAGGTAGTTTAGAAA # Left flank : ATTAGCTTGCTATAAACATAAGAGTTTATTTTGGCAAATAAGTATGGTGTATTTAATTTAGCGACATTAGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTAGTCGCCGCGGGAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACAGTATAGAAACAACCACAAAACAGCAAACGTCTGAAACTCAAACAACCAAAAAAATTTGAGGAACGGGGTTTTTGAAAATTAAATTCCTACTTATTGTTAACCCTTTTTTTTAACTTAAAATAAAGTATTTAAAAATCAATATGTTGAAAAATAGCTCAAAAAAAGGGTTTTTATTGGCAAAAATAGACTTTGCCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : TACACTGCTTATTGAGTAGGTTAAAATGGTGATTTTTTTAAGAGGGGATAAAGGGTCTATTATTTCTAATAAACAACAAATAACCAATGCTGTTTTCGAGCTATCAGTGTTCTTCTTTACAAAAGTTAACAATTAAACCACCAAAAAAAGTTGCATGGTTTTTTGCAATCACTATACTTTTATAGCATATTTATACGAATGGATAAATTTTGTGCCGTTAGGCTTAAAATTTTAAATAAATCATAAAATTGGATTGACAAGGATATCTGATATGGATTATAATTTTCAACACACAACACACAACACACAACCTGCCCAACCTATAATTTCACCTTTCTAAAGTTAAGCTCAAATCGTTTATTATTTCACAGTAGTTTATTCTTTCCGCAATTTCAGCAAAATTTTTCAAAATTTCTTAATTTAGTCTTTTTATCTCGGCCGATGGTTTTGGTATTAACTATGGTTGTATTACAGTCTATCTCTTTTTCTAACTATGCATT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: R [matched GTTTACTACCGTATAGGTAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 337904-338171 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGQ01000008.1 Gilliamella apis strain M1-2G Gilliamella_apicola_M1-2G_contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 337904 28 100.0 32 ............................ ACACGTTAAATCCGAGGTGACAGAGTGAATTT 337964 28 100.0 32 ............................ TATAGCTTCCCACGCACGCTACAACGCCAATA 338024 28 100.0 32 ............................ CATCCGACTCTAATTGTATTTTTTTAAATACA 338084 28 100.0 32 ............................ AGCAAAAGGAGGGATGACTAATGTATTTATTA 338144 28 75.0 0 .................C..CAA.ATC. | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.0 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : TTAGCTTGCTATAAACATAAGAGTTTATTTTGGCAAATAAGTTTGGTGTATTTAATTTAGCGACATCCGCAATGTGCTGACAACTGAGTGAGGTTAGCATGACAAACAAGGATGTTTGGCAAGGCGGTGCTTTGTCAGGAACAAATCACAGCCGGTGCGTTAAGACCGAACGAAGACGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGAAGATTGTAAAGAGGGTTCGCGCCAACCCTCTTAACTCGGACGTAATCACCGTATAGAAATAACCGCAAAACAACAAAACGTCCGAAACTCAAACAACCAAAAAAAATTGAGGAACGGGGTTTTTAAAACTTAAATTCCTACTTATTGCTAACCCTTTTTTTTAACTTAAAATAAAATGATTAAAAATCAATATATTAAAAAATCACTTAAAAAAAGGGTTTTTAATAGTAAAATTGCGCTTTGTCTTTTTGCCAACTGCATTTATAGTATATTGGATTCTA # Right flank : ATTTGTATCATCTTTTGGATAATTATAGTTATTTTAAAAAAGATCGTTTTTTACACAAAGTAATGTTATTTTATCATCATTATAAATTGAATTTACTGTCTAAATATCATGGATTTGATTCATTCGTCTGATCTTAAAACCATTTTACATTCCAAGCGTGCAAATATCTATTATTTAGAGCATTGTCGAGTTTTAGTCAATGGTGGTCGAGTTGAATATGTGACCGATCAAGGGCAGCAGTCATTATATTGGAATATTCCAATAGCCAATACCAGCTGTATTTTACTTGGTACAGGTACTTCATTAACTCAAGCTGCGGTGCGTGAACTTTCTCGAGCAGGAGTTATGATTGGCTTTTGTGGGGGAGGGGGAACGCCTCTATTTTCCTCGACAGAATCGGAATTTGCCTGCCAATTCTTTTCACCGCAAAGTGAATATCGTGCAACCGAATATCTGCAAAGTTGGTGTCAATTCTGGTTTGACGATAATCTCCGCCTACA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //