Array 1 23867-23607 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018301.1 Fischerella sp. NIES-4106 plasmid plasmid3 DNA, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =============================================== ================== 23866 33 100.0 40 ................................. GGAGTCCCAGTTAGCGTAACGTTACGGTGACTAGGCGATA 23793 33 100.0 47 ................................. TGAGTATTTAGGTAATCCATGAATGCCACATTCACAGATTTTTCCGT 23713 33 97.0 41 .....T........................... GGCAATGTGATGGAAAAATTTCCATCACATACCAGCACATT 23639 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =============================================== ================== 4 33 99.2 43 GTTTCCAACTAATCCGACTTAACCCAATCGGTG # Left flank : GTATTAATAATACAAATAAATTATAGTGTCATTTATACCATTATTTATCTTCTTAGCCGTGTACAAGGAATTCTAAATAAAAATACTAAATAATTTAATATAACATAAACTTATAAATCTAATTTTTTATCTAAAAAATTATCGTAAGTATATGAAAAGTAGCAGATAAATATTAGTTAAAACGCCTGTGATGCTTTTATAGCTTAACATGTGTATTAGTAGATGGTATTGCATGACAGATTATTCATAATATTAAGTACGAAGGCATTTGCACCTGTAATTACCCACAGATTAGCAAAAGTATGTCAATCTAGACACAAAAGTTGGTCTAAAAAGTGGGCGAACTTCCAACGGAATTATCCCGCATCTGTCAACCATTATTGATGTGTAGTAGACCTTGGAGAAAATTTTCTCTAAGGTTGCCCCGCTAGTTTGGCTTTCATACCTGGACTTTAGACTAAAAAGCAGTCGTGGTGGAAACGTTTCCAATACGAGAAAGC # Right flank : TGAGCTGTTTTTTTCAAAATAACCAAGTGACTTGGTTAAAATGTTTCCAACTAATTTGGCAGGACTCCCCAGGTTTTAGCCCCGCTTCGATCTGCAAACATCAAGCAGATTAAAATATTAGAGCGATCGCATCCCCTACCAAATCTTTCCGGTCATGCCCAACACCAGCAGACAATGCTACTAATCATACACAGCAGCAAAGTAAAATCACTTAAGTTAACACCAAAATCTTCAGCAAAGAATAATCACTATTGTTTATAGCAAATAATTCTCTTCATTATACTGTTGACCTTGCATGAGCAAGTTGAAAGTCAAATATGCTACAGCCAATTTGAACAAATCTAGAATAATTATTGACCAGACAATTAAATAAATGGCAAAAATTTCACAATACAATTGGTAATTGTCCGCTAGTGTCTGCCGGACAGTCGGCTCGACAATTTTAATAGTAGGGCAGACAGGGAGATATTATATGGCAGACAATCGACCAGACAGTACCA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACTAATCCGACTTAACCCAATCGGTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 28590-28193 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018301.1 Fischerella sp. NIES-4106 plasmid plasmid3 DNA, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 28589 36 100.0 41 .................................... CCATGTTTTGGAACTTCACCGTAGACGCTTAATTCTTTTTT 28512 36 100.0 34 .................................... CTTGAAAGGTTAACTCGCACCCGCGAACAATATC 28442 36 100.0 34 .................................... GCTTGCACTAAAAATTGTGAACCATGCAACAAGA 28372 36 100.0 36 .................................... CTGAAAGCCGACAACCCAAGCTTTTTTTCTACCAGC 28300 36 100.0 36 .................................... TTTTCCCAATTTGTTCAATTTTCAATGGGGTTTTAG 28228 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 100.0 36 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : TGTCACTACTTTAGTTTTGGTTGGTTTTAGTGTTAGTTAAGATTTTTCGATTTCGGTGTCGGTATCTCCCATCAACATTTAGAATTCTCTCTTGCCTCGGTAGTTAACACCGGGGTTTTTTGTTTGGGTGCTTTTATATGAAGTGGCAGTTATATAATTAATAAGGTGAAAAATTAATTCAGCCTGCTAAGGTTTCACTGCATTTTGTCAGAATCTGCTTCCAGAGTGTTAACTATTGGTGGTCAAGAACCAGCAGCACCACCAAAGTATTATGTTATCTAGGTTTTAGGATAATTAAGAAGGTTTTGTAACATGGTCATCGACACCACTCACCAAATCCCCAAAACCCTATATTTTTCGTTGAGTGGTGTCGATTGCTTACTGGGTAAGGGTTTGAGGTATGTGTTTTGTTCGATTTTTGGGAGGATGTACTATACTTTTAGCAGTGGTGTCGATTTGGCGGCTGAAACCCTTACTGGGTAAAGGCTCCTAGACGAACT # Right flank : GCAGGCAGGCTTTCTCCTCCAGAGAGTGTCAAAAGCTCGTTTGTTCACCTTCTCCTGTGCCTGTGGTTTGGTGTACTGCTGAACAATCTCTTCACAGAAGAGCAGTTGGTTGACTTCGACTATCTGGGAATACTTGGTCATTGCTTTATGCTATGCCAAAAATTCCAAAAATCGCATTGCCAGAAAAATTTAAATATTTCAAAAATCACTCTTTTTATTGCCCCCTTCCCAACGCTACAATCTGCCGTATAAGGGGCAATCAATATTTACGACTGCAATTTATCACTCGTGAGCAAAACCCGCATCATTGCACTATTTAACCAAAGTGGAGGCGTTGCAAAGACGACGCTCACCCAGAATTTGGGCTATCATCTGGCACTCAAAAAACGTCGCGTCCTGTTAGTGGATATAGACCCGCAGGCTAGCTTGACTACATTTATGGGACTCGAACCCGACGAATTGAGCATCAGCATCCAGCAAGCAATAGTAGATAACAAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1464380-1464988 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018298.1 Fischerella sp. NIES-4106 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1464380 37 100.0 35 ..................................... AGAAAAACTGTTTATCTGACTTTCATGAATCAATG 1464452 37 100.0 34 ..................................... GTTCGTTAGTACTAAGTTGAAGTACTCTCAACTC 1464523 37 100.0 33 ..................................... GTGATCGCCAAACTAATCGGCCTGTGAATATCG 1464593 37 100.0 35 ..................................... CAATAAATTTGACGATATAAAACGCTTAAAAACTT 1464665 37 100.0 35 ..................................... GTGAAAATAATTAGCGACACAAAGCGAGCAGATAT 1464737 37 100.0 35 ..................................... TGCAACACTAGGATTGGCATCAAAGAATATTTTGG 1464809 37 100.0 34 ..................................... TGAATTTCTTTGTCTGTAACCGTAACACCAGCTT 1464880 37 100.0 35 ..................................... TTGAGAGGTGCTACCCATATCTAAGCCAAACATGC 1464952 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== =================================== ================== 9 37 99.7 35 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : TGTCAGGCTTAGGAATATTATCAAAGCGATACTCCACAAGAGTCGCCGTGCGATCGCTGTTAGCAGACCAGACATATAAATTTACTCCTCAATCAATACTACTTTCCTTATTTTCGGTCATTTCGGGAGCATCCCAATTCTTCAAAGTTACCTGGCGAATAGAATTCGCGGCTACACAAACATAGACGCCCTACGCAGGCTACAATTAATCTACCTGCAATAAGTAGTGTTATCTTCAAAAAACACAATTTGCGCGAAAGGGTAGGTGTTTTTCTGAACATGTCAAAAATATTGACTCAAACCATTACTCTGACTGGGTTTGAACCTTGTTGTACGGATATAGAGGTTTGCGGCATTGCCGAAAAGCTTGCTATGACTAGATTTGAAGGATTTTTTCTCAGCCATCACTTGACAAGCCAACGGCTGAAAAGATATATTCATTCTGGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCCAAAATGAGCG # Right flank : CTTAAATCACAATTTTTTATCTGGAATATTTCTGTAAAAGCTTGGAGATCTATATAGAGGTAGACAGTACACGGTTGTGTGCAATTAACCTCAAACACCCTCTTATATAGATTAAGTTCGAGAAATATCAATGATTAACCGTGTTTTGGATGTGATTTTTATAGATTCCTTTGCATTTGTCATTAATACAATGTTTGGTAGATTGCTTAAAAGTAAAATATGTAACTATGTGAGTGAGGGACAAGATAAACAGTTTACTGAAGATGAACGAGATACAGAGCAAAATGATCATGAGGAATTTGCGGAAAATTTATATTTTTGATAGATAAAATCATGACTAAGTAATCGTCCGATATCTCAAATACATCAACGAAAAGCGATCGCACCGGGAGCATCCCAAATGTTCAAAAAATTGTTAGTCATAATTTTGGACATGTAGAGACGTTGCACTGCAACGTCTCTACAGGGTTTAAATGTTAATTGATGTGTCTGATTTGAAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 2 2408989-2408011 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018298.1 Fischerella sp. NIES-4106 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2408988 37 100.0 38 ..................................... CCCACCCATTTAACATATTCTGATAAATTGAATCGGGT 2408913 37 100.0 33 ..................................... TCGGTATTTGGCGGTATTGGGGTACAAGGAGAC 2408843 37 100.0 37 ..................................... GAATTCGATTGATGCGATCGGGCGGATTCCGGCTTGG 2408769 37 100.0 33 ..................................... TCAGCGTTTGCGTGTCCTGGGGATTTAACCTAA 2408699 37 100.0 35 ..................................... ATATCCCACAATTCAACGACCGTTTGACAAGACCA 2408627 37 100.0 37 ..................................... ATCTGTAGTACGTCGCAATAGTCAAGCGATCGCAAGA 2408553 37 100.0 36 ..................................... TAAAAGTGGAACACTACACCCCTTGGGCTATTGCAA 2408480 37 100.0 34 ..................................... GAAATATCCGTCAACATTTAACCACGCGAGATGT 2408409 37 100.0 34 ..................................... AACAGCGATTAGCAGACGCACAAAGAATGCTAGA 2408338 37 100.0 35 ..................................... CAGGATCTTGTTTTTCTTTAACAGGAAGGGGGTGA 2408266 37 100.0 36 ..................................... AGTTGTATGCGCGCCAAATTCCAACTTTCTCTGATG 2408193 37 100.0 37 ..................................... GAAAGGGAGTTGAAGCGCAAACAATAACCCCTGTAAA 2408119 37 100.0 35 ..................................... GACCTCTTTAAATTTAAAATCCTGATGACATTTTA 2408047 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 14 37 100.0 35 GTTGCAACTAACATTAATCCCTATTAGGGATTGAAAC # Left flank : CCGGAAGATAAGCGTCGTACCAAAATCCACAAAGTTCTCAAATCTTATGGACAGTGGATGCAATATTCTGTGTTTGAGTGCAATCTGACGGAAACCCAATATGCTAAACTGAGGGCGCGGTTGGCAAAACTCATTAAACCTGATGAAGACAGCATCCGCTTCTATTTTCTTTGTGCTTGCTGTCAAGGTAAGGTTGAGCGCATTGGCGGCGAAATGCCAATGGATACTACAGTGTTTTTTGCTTGATGACGGTGCAGACCAGTAGGTGTAGAAAAAAAGCAGTCAATTTTTGGGGCTGAAATTCTTATTCTGTCTATGTTAGAGGCTGATTTGATGGTAAATGAGGTCTGCACCTTTTCTGTAAATCTTACCCTGACTAAGTTTGAGCCATTTTATATTAATTTGCTCTTGACAGTGCGATCGCTCAAACGCTATATTTACTCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTAAATCGAGCC # Right flank : GGTATGATGATATGCAGATATATTTGGTTCTTCCGCTAATTTTATGGATAATTAATAGTAAAATGCCAGTTGAATAGACTGCGTAATCGAAAATTATTAAAGTTACAAAAGCCATATCCAAGTCTTTTAATCAACTTAAGTTTATTATTAATTCCTTCAACAGTACCACTCGTTGACCCCGATAGTTATGCAACAGATCAAAGATTATTTATGCGAGAAGTAACAATTCTTAAGAGCTTAAATGGATATCCACGAATACCAAAATTTATAGATTACTGGGATGAAAACCAACAATCTTATTTATTACAGGAGTATATTCCTGGGAAAACCCTTGATGAAGAATTAAATCATGGCAAGAAATCAGAAAATGATGTAGTTAAATTTTTAGCAGAGATTCTGGAAATTCTTCGCTTTGTGCATGAAAAGGGAATTATCCATCGTGATCTTAATCCCAGAAATATTATTAGGCACAGTTTAGATGATCAACTAGTATTAATTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTAACATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 3 2722283-2723176 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018298.1 Fischerella sp. NIES-4106 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2722283 37 100.0 33 ..................................... CTAAAGATACAGTTTCATTTTGTACCTTATATA 2722353 37 100.0 35 ..................................... TGCCTCTACAACTTCATGCATATCTAGATATAAAT 2722425 37 100.0 35 ..................................... CTCACAAAGTATAAGAGATATTTTGCAAGATTCTT 2722497 37 100.0 34 ..................................... CTGTGATTCCCTCCAATCAATTCATAAACATTTT 2722568 37 100.0 35 ..................................... TTTAATCGGCTAAAACAAACTGGATTACCGCTTGA 2722640 37 100.0 34 ..................................... ACATTTGGACAGTAGTACAAGACTACCACCACAC 2722711 37 100.0 34 ..................................... TCTAACAGTCTTGCCTAGTTCATCATACGAAATT 2722782 37 100.0 37 ..................................... ATGAATCGCAATAGGATTTTTTTTCAAACTCATCCAA 2722856 37 100.0 33 ..................................... TTAAACAATGGGCTATGATGTCCGGAACACCTA 2722926 37 100.0 34 ..................................... TTGGATTATCTCTTTTAGCAGGTGGGAATTTTGG 2722997 37 100.0 33 ..................................... TTGATTTAAATATACCTAAATTAGGGCAGATAT 2723067 37 100.0 36 ..................................... GCTTTAATTCCTCATTTCAACATTGAGGAAATGAAA 2723140 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 13 37 100.0 34 GTTGCAACTAACATTAATCCCTATTAGGGATTGAAAC # Left flank : CCATAGAGAATTTGCGGTTTGACGATAGTCTTTATCGTTTTTGGGGTGAAAATTTACTCGATTTCACCAATTTTCAAGAATTTATCCCCGAAGTCGGAACTTATGAAGGTCGGCAACTGGGAGGTAGTATGGTTCCTGGGATGTTGGTGGAAGATTTTACTTATACATTGTAAGGTAATGATCTGTATCAACTATTTCACAAAAATTATCCTTTCATGTAAAGATTAAATTAAATGTTGAGTTTCTGTGATGGTGCAGACCTGTAGGTGTTTTACATGGAGACTCAATTTTTATGCCTGAAAGCCTTACCTGTTCTGGGTTTGAAGCATTTACATAAAAATAGAGGTTCGCGCAATGTCTAAAACTCTTCCCAGTAAAGCATTTGAGCCAATTTTTTATTATGCACTCTTGACAGTGCGATCTCTCAAACGCTATATTTACTCCAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTACTGGATTGAGCA # Right flank : CTTAAAAAACTGGCTCTTCAGTATCCATACTCCTCACTCAAAATCTTAAATACTGTTGCGCCCATAATGCTGCCTGAGTACGATTTTGTACACCAAGCTGACAAAGAATTTGAGTGATGTAGTTTTTTACCGTACCTTCAGTCAGATAAAGAGTTTGAGCAATTTCTCGATTGTTTTTCCCTTGACCCAATAGAGTTAAAACTTCTAGTTCGCGATCGCTAAACAAGTTTTGGTAGTTTGTGTGTTTAGATACAGGGGGATTAATTTGAGCAAAGACTTTGGGAGCGATGGTTGGCCCTAGCTGGCTGTATCCTTGATTCAGGGTGCGGATTGCTGCTGCTAATTGTCCGGAGGGAGTACTCTTGAGTAGATACCCTAATGCTCCTGCTTGTAGGGATTGCCAAATATATTCATCTTCATCAAACGTTGTTAGTACCAGAATCTTGATCCAGGGATAGCGTTGGTGAATTTCACGAGTGGCAACTACCCCATCACAAACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTAACATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 4 3292164-3293355 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018298.1 Fischerella sp. NIES-4106 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3292164 37 100.0 36 ..................................... GATTATATGGCATCTTTTTGGGGCAAAGATCCAGAC 3292237 37 100.0 34 ..................................... AGTAGCAACCCGCGCACTTGCTTGTAAGCAGCAA 3292308 37 100.0 36 ..................................... AAGTAAGTATTAAATGAGAAGTATTAAACCCTTGAT 3292381 37 100.0 35 ..................................... AACCTTTCGGTATCGCCTACTAGATATGAAATGGG 3292453 37 100.0 34 ..................................... AAAACCTAACAACAAAATCGACCTAGCTCAAGAG 3292524 37 100.0 33 ..................................... AAAGATGCTCATCAATTAATCCATTGCTCTTGG 3292594 37 100.0 34 ..................................... ACAACCTAGACAAATTTGAAATCACGGACAAAGC 3292665 37 100.0 40 ..................................... TTGTCGTTGTCTTTTACGAACCATTGACCGTTTTGCTCGA 3292742 37 100.0 34 ..................................... CTATTATTTTAGGTGAAATGGTTAGATCATGGGT 3292813 37 100.0 33 ..................................... AAAACTATGAGGATGTTTATAAATGGTCAATTA 3292883 37 100.0 35 ..................................... AACGGTCTATAAGATTCTTCGCGACATCGACATAG 3292955 37 100.0 35 ..................................... TTCTAATTTCTGGATTCCATCTTTTACCTCATGGT 3293027 37 100.0 38 ..................................... TTATTGAATTAAAATCTAATCCTAAATAAAAAACACAA 3293102 37 100.0 35 ..................................... CCAGATGATAACGTCGCCAATCAGAAGATTGTATG 3293174 37 100.0 35 ..................................... ATTAGATCCTTCTTTAGCAGAAACAGAGTACTTAT 3293246 37 100.0 36 ..................................... CAAGAATTCCCTCCTCTTTTTGACTCTTGAGGTAAA 3293319 37 97.3 0 ...................T................. | ========== ====== ====== ====== ===================================== ======================================== ================== 17 37 99.8 35 GTTGCAACTAACATTAATCCCTATTAGGGATTGAAAC # Left flank : GGTCTAAAGACACTGAGTTTCCCACTTACCGCGAGGTCTTATGATAAATAGTATTTTTATACTATTTTTATCTAGTTTGTATCTACTCTTTAACCAGTATTTTACCTGAGACTGGTCATGTGTGTATCCTTAAGGGACTTGCAAATAAAAAACATTCAATTCGTAGGGTGCGCGATCGCCTAACAGGATTTTGGATTGACCTCCAGGATTTAAATGCCAGTAAATATTACAGTGTTTTTTGCTTGATGACGGTGCAGACCAGTAGGTGTAGAAAAAAAGCAGTCAATTTTTGGGGCTGAAATTCTTATTCTGTCTATGTTAGAAGCTAATTTGATAGTAAATGAGGTCTGCACCTTTTCTGTAAATCTTACCCTGACTAGGTTTGAGCTATTTTCTACTCATTTGCTCTTGACAGTGCGATCGCTCAAACGCTATATTTACTCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAGTCGAGCG # Right flank : CAAAACCCTCTTAGGAATCCGCCGGGAGTCAATACGGTTCGGTTCAAATTTTCCGTCATAACTTTGCGTATTTGAGACGTTTCAGTGCAACGTCTCTACAGGCTTTAAATGTCAATAGATTTATCTTCTCGAAGCAGTATTGGAACACATTCTATTGAAATTTGATGAAAATAAGAGATTTGCAAGATTTAAGCTAACGTGAGTTCGATAAATATTATCAGACTAAGCAATTAACTCGCTCGCAAGTAAACTGCGAGCTAATAGTCAAACTCTACTTAAAGTAGACTGAATCAATAAGCCTTTTAACCCACTTGAAGTGGGTTTTAGCTATTAGCTCCCAAATTTATTTGGGTGCGGGATATTGGGCTAATGAAATCCATCGAACTCACGTTAATTTAAAACTCAAAAACTTGATTTACGAATCCAAAACTTGATTTACTTATAACACTCCCTTAGAACTGGGGATCGTTCCTGCACGACGGGGATCAATCTCTAACGCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTAACATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //