Array 1 4628-5933 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZJ01000037.1 Helicobacter cinaedi strain P18D1268 entry037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 4628 36 100.0 33 .................................... ACTTACAAAACTATGGGTATGAGAAGTTTTTCT 4697 36 100.0 30 .................................... ATTCAAACATGCTTCTGATACAGGAGATTT 4763 36 100.0 31 .................................... AGATTTTTTCCTTGATTTTCTCGTTAGCTCC 4830 36 100.0 30 .................................... TGGAATTGTTTCTTGGAGGAAAACTGGCAC 4896 36 100.0 31 .................................... CTGAAAAAACGCTCAATGAGTGGCTAGAGAA 4963 36 100.0 30 .................................... TTCGCACTCCTCTATTTTAAAATCGTTTTT 5029 36 100.0 31 .................................... CAAAAACTCCTTTGGGTTAAAAAAAAAAAAA 5096 36 100.0 30 .................................... CAGCAGCGGCAGTATTCTATGCAACAGAAT 5162 36 100.0 30 .................................... ACCTATGATTTTGATGTCGATAGCGAGGAT 5228 36 100.0 31 .................................... TCTTTCACTTGCATATGATGAATGGAGACCA 5295 36 100.0 32 .................................... TTCACAAAAAGCATTTAATGAAACTATGCTAA 5363 36 100.0 33 .................................... TTTTGCTTTTAGATCTTATGCAAACACTTTTAG 5432 36 100.0 31 .................................... TCATTTTTCCACCTCCCCATTTTTTTTAGCT 5499 36 100.0 30 .................................... GTTATTCCCTCTGTCCATATATAAGCGTTT 5565 36 100.0 30 .................................... TTTTTCGCCTGTTACTTCACTCTCTAAAAT 5631 36 100.0 30 .................................... TTCAAATATTTGGATATATGGGATACTGAA 5697 36 100.0 30 .................................... CTCGGCCTCGGCGTAATCCCCGATGTCGTA 5763 36 100.0 30 .................................... CCCATGCCCTGTGGCAAGTGTCTTGCTTGT 5829 36 100.0 33 .................................... TAGTTTTGCTTGCTTAAAGTCTTTTAGGCTTTT 5898 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================= ================== 20 36 100.0 31 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : CTTTTTTATGATGCAATTTAGCGTGTATATGAAAATATGCAAAGGGTTAAGCTCGGCAAAAAGCTCTCTAAATGTTGTAAAAAAGGTGCTTCCACCTTATGGTAATGTCCGCGCACTTATCATCACAGAAAGACAATTCGACAATATAGAAATATTATTAGGAAACCCATCATTTAATGAGAATGTTAATGAAGATAAAAATCTTGTGCTATTTGACTTTGACGAAAATGCGGGTGATTACCGCTATGGTATGGAGTATCAAAAACAAGAAGAATTGAATACAACTACTACACAACCAAAACAAAAAATCAAAAATAGGCAACCAAGCCTATTTGAATTCTAGGGTTTTGATAGGGATATGATTTACCCTGCGGAAGACCCCTTACTCCCTTATTTTAGTCCCTTCTTAAACTTCTATGTCGCGAATTATAAAGGATTTCAGGTAATTTCCAGCTTAAAATCCTTTGAAATCCCTATCTATAGGCACCAACAGAGAGCCT # Right flank : CAACTCTCAAGGGGCGTTTTATTCCCCGGTATTCTAGCATATAGAAGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 19-320 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZJ01000124.1 Helicobacter cinaedi strain P18D1268 entry124, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 19 37 100.0 29 ..................................... AGATTCTTTTACCAAAAGATAAATTTGTT 85 37 97.3 30 G.................................... TTTGGAAGCGTTGGTAAGCAATAATAATCC 152 37 100.0 29 ..................................... TATTTTTGTGCGTGGATTATACTTTAATA 218 37 100.0 30 ..................................... TCAATTTAGAGCTTGGCGGAAGCCTATTTG 285 35 83.8 0 A...................--.A.........T.T. | T [314] ========== ====== ====== ====== ===================================== ============================== ================== 5 37 96.2 30 TGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : AGCGTGTGTATGTCCGCAT # Right flank : CACTCTAATGCTTTTACTTGTTGTATCAAAGTTTGTCTATCTTATGTCATTACTAGGGCTTTGCCAAAGTATATAATCCACACAAACAAAAATCCTGTTATTTTTCTACAAAGTCTTGTAAGATTCTTAAATTTAGCTAGAATGCTGTGTTAAAAAATGACATATTTAAAAGGAAATAGATGAATAACTTCAGTAAGATTGGCTTTGTTTTGGCGACTTTGGGTAGCTCCATAGGCTTGGGACATATTTGGCGGTTTCCCTATATGGCGGGGGAAAATGGCGGTGGAGCGTTTGTTATCTTTTATCTTATCTTAGCCATTCTCATTGGTGCGTCTATGCTGATGGCGGAAATGCTCCTTGGCAATAAGGCCAGAAGCAATCCTTTGGATAATTTTACTATCCTTAATAATCTTAATAAACTTCCACCAAACACGCCCACACAAGAGCATAACACCACAGATTCTAAATCTAGCTCATCACTTATGTGGCTTGGCTTTTCT # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 52-949 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZJ01000045.1 Helicobacter cinaedi strain P18D1268 entry045, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 52 36 100.0 31 .................................... TTGACTGCCACGATTACCGCGATATGAGCTT 119 36 100.0 31 .................................... ACTTAAACACATCGTCCCCGGTGAAAGCGGA 186 36 100.0 30 .................................... GTTTGGATATATGGGGGCGAAGGACTCAAA 252 36 100.0 30 .................................... ATTCTTGGAGTCTTTCGATCACAATTTTGA 318 36 100.0 30 .................................... ATTATTGGATTTCTTTCAATTCGCCCAGAG 384 36 100.0 30 .................................... AGGACAGCCGCATACAACGCCCCGAATACC 450 36 100.0 30 .................................... GGCAGCAAATCAATTCTCCAAATCAGTGAA 516 36 100.0 31 .................................... TCAGAATCAAGCTCGAGTCCCTCGATTACGA 583 36 100.0 31 .................................... AAAAAAATCGTAGAAATCATAGAGAAAATCA 650 36 100.0 30 .................................... CTCTGAACCCTTTTTCTGTGACTTCAATAT 716 36 100.0 30 .................................... ACAGGTTTTTCCACATTGGAGGAATTTTTT 782 36 100.0 30 .................................... AAGCTAAGTTACAATGTGATTGTGAAGTAT 848 36 100.0 30 .................................... TGTTTGCTAAATTTACTAATCCTTTATTTA 914 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 99.8 30 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : AGTTTAAGAAGGGACTAAAACCAACTCTCAAGGGGCGTTTTATTCCCCGGTA # Right flank : TTAGTGAGATTGAAGCCAATTGGATACGAATAATGGCAGAGCTAGAGACACAAGATGGCGATAGTAACACTTCATAGAGTGTGGTTGAGTCAAAGCAGAATTTTAATGCCCTAAATGACTTTAAAAGTTATGCTGATGAAAATCAAAAGCAAACAACAAATGGCTTTTCATTTGGCTCTGCGTTTTCTAAATTGAAAGAAAAGGGCATTGAAGCAAAAGAAGCCATTGAAAAAAAGCAGAATGCTAGATAAGGTTAAAGAAAAAACAAGTGAGCTGACAAACAAAGGACTTGAAAAAGGCAAAGGATTGATTGAATCTCAAAAACAAAAAGGGGCTAACAATGAGCGAGATTAAGAATAAAACATTTGAAGATAAGTACAATTTGTTGGGCAATACACTGCTAAAAGTTAATGATATTTTATCTAGTGATTTTAGGAGAGAGCTAGAATCTTTGAGTCCTTCTTCTATGAGTATGGATAAAAAACTTTTATTGTTTTCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 472-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZJ01000060.1 Helicobacter cinaedi strain P18D1268 entry060, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 471 36 100.0 30 .................................... AAGATTTGCACAGAGTAAAGAGGCAAAGAG 405 36 100.0 30 .................................... TAAACTTCTCCCTATTGCGTGGTGTTTTTT 339 36 100.0 30 .................................... GGTAGATTCTGCGATGCACGAGCATATCAA 273 36 100.0 30 .................................... ATGTGATATTGATGTAAGCAATCGTGGATT 207 36 100.0 30 .................................... ACTTCACTTAGGTTGTTTGCAGCACCAGAG 141 36 100.0 30 .................................... ACATTTTTATCGCAAATTCTGGAATCTCTT 75 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : CCCAAAAACTCTCATTTATAATTTTTATTAGATATTATAAAAATGTGTAAAAGAATAAAGCCTAAAATAAGATTCTCTATAAAATACCAAGATGATTTACTCTATTTTAACACCTTTTACCTATCATTAAGGCATTAAAAGCCCTTGTGGCATTCCCTAGTTAGGCGTTTTTTGACATTTTGGTATGACTTGTTTGGATAGAGTTGCGTGTTTTAGGATATTTCAAGCTTTGAAAACGCTCAAAGCACACACTAGAGCCGACTTGGAAAAGTC # Right flank : CTCGGTTGGCGGAATTGCTGGGGTGTGTAATGTTTTAGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 222-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZJ01000065.1 Helicobacter cinaedi strain P18D1268 entry065, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 221 37 100.0 29 ..................................... GTCCCCTGCATATATGCGTGGCGAGTGTA 155 37 100.0 30 ..................................... AAAGCACATTCAAAATAATGCGTAAAGAAT 88 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================== ================== 3 37 100.0 30 TGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : | # Right flank : CAACACCTGTCCAGCGTGTGTATGTCCGCATGTTTTAGTGGGACCCGATTTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //