Array 1 172576-171612 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKOC01000001.1 Fusobacterium nucleatum strain 12230 NODE_1_length_386863_cov_114.933, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 172575 30 100.0 35 .............................. AAAGAATGGGGAAATATTACAGTTGCTGTATCAGC 172510 30 100.0 35 .............................. TAGTTTTTGAGTAGTCTTTTTCTTTTTCCTGGTCC 172445 30 100.0 36 .............................. TAAAAATCAACAAATACTGCATTATCATCTATTTTA 172379 30 100.0 39 .............................. ATTTATTCAGATTCACTTATGATGAAATAAGTACCCTAA 172310 30 100.0 36 .............................. GATTTTGAGGCTATGGCAAAAGAAAATTTAGAGCTA 172244 30 100.0 38 .............................. CTTAATATCCATAATAGATATATATGATTAATTTCTCC 172176 30 100.0 37 .............................. ATTTATTCTCACCAAGTATGGAGAAGATATGCCAATC 172109 30 100.0 37 .............................. GTTTTTTCATTACCTTTTTTCCACTCTTTTTCAGTGA 172042 30 100.0 37 .............................. ACATAAGGAAGATAATTTTTAAATACTGCGAATGTAA 171975 30 100.0 37 .............................. TTATCTGACCATTCAATAAACTATTTTTTTCTAAATA 171908 30 100.0 37 .............................. TAAAAGCAATGGGAACTTATTGGGGGATGAATAATGG 171841 30 100.0 36 .............................. ACCAAACAAATCAAGAATATTCCAATCTTTTTTACT 171775 30 100.0 37 .............................. GAAATAAGACAATTTATTTGGAATGGACTTGTGTCTT 171708 30 96.7 38 .............................G TGAATTTCTTTAAAATTTAATGTATAATTCAAGTATCA 171640 29 90.0 0 .......................AA-.... | ========== ====== ====== ====== ============================== ======================================= ================== 15 30 99.1 37 ATTTATGTATTTCTATATTAGAATTTAAAT # Left flank : AATCTTTTCAAATGTGGTGGTGATAAAATGTATGTAGTTGCAGTGTATGATATTTCATTGGATGAAAAAGGTAGTCATAATTGGAGAAAAATTTTTGGAATTTGTAAAAGATATCTTCATCATATTCAAAATTCTGTCTTTGAAGGAGAATTATCAGAAGTTGATATTCAAAGATTAAAATATGAAGTTTCAAAATATATTAGAGATGATTTAGATTCTTTTATAATTTTTAAATCAAGAAATGAAAAATGGATGGAAAAGGAAATGCTAGGTTTACAAGAAGATAAAACTGATAATTTCTTATAAAATTTATTGTCTACCTCTCATAATGTAAAATTACTGGAAGATTGACAAAAGTCAAAAAAGTCTTTATTTATAAATAAATTTAAGAAAATAAAAAAAATTTAAGAAATTAAATTTTTTTATTTTTTACTAAAAAACTTATATTGACAAAAAGATATTAAAAAAGTATTATATGGGAGTAGTTTTTTTAGGTAGCT # Right flank : ACAGAAGAAAGGGATTGAAAAATAAAGACTTAATGCTGTTATATAACAAAAGAATAAATAAAAAATTAAAAGGATTAACTCTAGTTTTTTATATAAGTTAATCCTTTTTAATAAGTTAAATTAAATTTATTCAATTTTTTAAGGGGAGTACATTTTTTATTATGTTAAGTATAGCTTTATAAAGTAAACTAAGAATTAAGTATTCATAAAGTAACAGAAAAATTAAAAAAACGAAATTCAACTAAAATATTAATATAATGAACACAAAAATTTAAGATAGAAAATAAAAATTATCAATTATTAAATTAATAAAATTTTATTAAAAATTAAGCAAATTTCACAATAAAAATATTGCATTTAATCGTAATTGGTGTTAATATATACTTAATAAATTTGAAAGATAAATTTAAAATTTTATCTACTAAAAATAGGGAGTGATTATAATGAGTTTTTTAGGGCAAGTTAGAAAAAAAGCCTTACAAGCAAACAGAAGAATAGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATGTATTTCTATATTAGAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 172464-175149 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKOC01000002.1 Fusobacterium nucleatum strain 12230 NODE_2_length_191728_cov_154.899, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================== ================== 172464 35 100.0 44 ................................... TTTAATTAGTTCAAACATCCAAACCTTCCGAAATATCAGAACCA 172543 35 100.0 39 ................................... TTGATGGTTCCTTTACACATATTAAGCTAACTTTTATTA 172617 35 100.0 40 ................................... TCGTCACACCACGAGAGTTGGTTGCACCTGAAGTAGCAGA 172692 35 100.0 40 ................................... TATGCAAGTACGTCAGTTCCTTGAGAACCGTCGTAGCATA 172767 35 100.0 40 ................................... TCACTTGGAAAACTTCCTCTTAATAATCTAGACATAAGAA 172842 35 100.0 39 ................................... ACTTCACACTAGAATTTACTAATCACGAATGGAAATAAA 172916 35 100.0 40 ................................... TGTTCCAATGAATGGCAACATATGATGTTCACATAAAGAA 172991 35 100.0 43 ................................... TTATATACAAACTGATATTCATAGAAATTGTGAAAAATACAGA 173069 35 100.0 41 ................................... TCCAAATCTTATTAAATTTAATATAAACTTTATTTCTCTTA 173145 35 100.0 40 ................................... TATAACTACAATATCCATCTCTACCAGAAATTTGTTCAAA 173220 35 100.0 39 ................................... TAATTTCTTATAACCTAAATATCCTAATCCTAATACAAA 173294 35 100.0 41 ................................... TTTTCTTACATATTATGCATTTGTTGTTGTTGCATAAATTA 173370 35 100.0 38 ................................... TTCTCCAACTGGTAGCATACCAGCTAATTGATCTAGGA 173443 35 100.0 37 ................................... TAAGATAGAGAAAATGCTATAGATAATTTAGATTTAT 173515 35 100.0 41 ................................... TGAAAATACAAAAAGTAACACTTCGCTTTTCGGTGGAAAAC 173591 35 100.0 38 ................................... TCTTGCAATCTCAATGATTGGTTCAATTAAAGTACAAA 173664 35 100.0 42 ................................... TGATAGCATATGGACAAGTAACGGCAAATGTTCAACCAGAAA 173741 35 100.0 41 ................................... TTCTCTTATTTGAGTTGATTGGTCATAGTCTTCGTTAAGTG 173817 35 100.0 42 ................................... CATTTTTGCTTCCTCACTTTTAAAATATAAATCTTCCATTAA 173894 35 91.4 46 .....A..............A.........A.... CGAATTGAGCTATTATAAGTTTAATATTTTCTGGTATTCTCATTTC 173975 35 97.1 44 .....A............................. CTATATTAATTTTTGTGTTTGTCTTGTGTATCCTAATTTCTCCA 174054 35 94.3 46 .....A.............T............... CTAACCTTTTTCTTTCCACTCTTTAAAGATACCTTTTTTATAAAAA 174135 35 100.0 42 ................................... CCTTTCATATTCTGTTATACCTAGTATATAATCTTCTATATC 174212 35 100.0 40 ................................... CTGTGCTGTTTTAGTTCCATTATAATTAGTTCTGATTTTT 174287 35 97.1 40 .....A............................. CCAACCGCACTTTTTACACTTCCACATTTTCATCACTCCA 174362 35 97.1 36 .....A............................. CGCATTTAAATCACTCCTTTAATTTATTTATTTAAA 174433 35 94.3 41 .....A..............A.............. CAAATAATCATGTATAACTGCTGCTTTTATATATTTTCCAA 174509 35 94.3 42 .....A.............T............... CCTTTTTATAATTTTCTTTGTTAATCTGTGTTCAAGTCTAAG 174586 35 94.3 43 .....A........................T.... CAATATTTCTTTTATTTCACTATAAAATCTTCCTTTACTTCCA 174664 35 94.3 43 .....A..A.......................... CCCACGGCTATTTAATTTCCAATGTCCTTTTAATTATAATATA 174742 35 97.1 36 .....A............................. TATTATACATTCTGATTAAATGTTCTCTGTATTCTC 174813 35 97.1 40 .....A............................. TCTTCACAACCATCTGACCAACATTTTTTAACTTGTTGAC 174888 35 97.1 39 .....A............................. CTTCTTTATGGATTAATATTTAATGGAAGACATGCTTAT 174962 35 91.4 42 .....A.............T..G............ TTTTCTCTATTCACTACCATTATTCATCAGCTCCTTCTCTTT 175039 35 91.4 41 .....AA...............G............ CCAGTTTTTTTAAGTAAGTTTAAAATAGAATTTGTTGTAAC 175115 35 80.0 0 .....A.............TA.A..T...T.A... | ========== ====== ====== ====== =================================== ============================================== ================== 36 35 97.5 41 ATAAGTGAGAATATAACTCCGATAGGAGACGGAAA # Left flank : CAGATATATACAAACCAGTTTTAATTAGGTGATAATTATGGATAATTGGGATTTTTTAGATAAAGATTTTGAAAAGGAAGTTTTTGAAGATAACTTTACTGTTATTATAATTTATGATATTATATCCAACAAGAGAAGAACACAGTTATCTAAACTTTTGAGTGCATTTGGATTTAGAATTCAAAAATCAGCATTTGAATGTCTTTTAACAAGAGAAAAATATAAATTACTCATTGAAAAGATTGATAGATATGCAAAGCCAAAAGATTTAATAAGAATCTATAGATTAAATCAAAATGTAGTAACTCAAATTTATGGAGAAAAATTAGAAATTGAAAATGAGATGTACTACTTTTTCTAATGAAAAGTAGACGATATGATAAAAATGGGAAGTTCAATATGATTTTTGATAAAACAAAATATAAATTTTTAAAATTTAAAAAGTCACACGATAATAGTTTTATAAACTATTGCAAACAAAAGTTTTTTTGAGTATAGGA # Right flank : ACTCCTTCTATTGACAAGAAATCAATATCTTTTTATAATATCAATATAAAGAAATAGAATTCTAAAAAAGATAAAAAAGCCTAAAAATGCTATGATATTTCAATATTTAATCAAGAATTTCTCACAATTGAAATTTTTACAAAAAGAAATAAAAACTATTTAAGGAGGAATTTTATGAAAAAATTACTATTTTTTACATTGTTTATAGGAATTTGTATGAGTGGAGTAGCAAGTACAAAGGAAAAAAATCCAAATCTTTTAAAACAAGTATATAAAAAGGAAGAATTGATAACATTGGACAAAGAAAAAGTAGCAGGAGGAAACGGAACTTTACATGGGAAATTTGCCTTTACTAGAGATATGGCTACTGAAGAAGATGCTATCAAAGAAATAGGTTGGATGACACTAAATAAAGGAGAATCTGTAGGAGTACACCCTCATAAAAATAATGAAGATACTTACATTATTGTTTCTGGAGAAGGAATTTTTACAGATGGTTC # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAGTGAGAATATAACTCCGATAGGAGACGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //