Array 1 14198-15378 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFWV01000136.1 Klebsiella pneumoniae strain G4717 G4717_NODE_58.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14198 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 14259 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 14320 29 89.7 32 ............TG............T.. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 14381 29 100.0 25 ............................. AACATCAGTGGAAATCCACTGCGGC Deletion [14435] 14435 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 14496 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 14557 29 100.0 32 ............................. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 14618 29 89.7 32 .........T...T.A............. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 14679 29 100.0 32 ............................. CAGGTTATACTGGCAAAACGTCGATGGCTCTC 14740 28 93.1 32 ..........-..T............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 14800 29 93.1 32 ............TC............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 14861 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 14922 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [14933] 14984 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [14994] 15047 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC 15108 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 15169 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 15229 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 15290 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 15351 28 89.7 0 ..........A...........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 94.3 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGTGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5046-7633 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFWV01000097.1 Klebsiella pneumoniae strain G4717 G4717_NODE_22.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5046 29 100.0 32 ............................. GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 5107 29 100.0 32 ............................. ATCTATTCCAGCATCGAGCTGCACCCGCAATT 5168 29 100.0 32 ............................. GTGGTTCGGGCGGCTCCGCGCAAAACCACGCA 5229 29 100.0 32 ............................. CACCGCGTTGCTGTTCCCGCCGGTCGCCGCCG 5290 29 100.0 32 ............................. ATATCGCCGTCGCAGTGGTAGAATCGGTCTTG 5351 29 100.0 32 ............................. CCCGGAGGAAACGTGGCAACAGTTCAATACCC 5412 29 100.0 32 ............................. AACGGAATTCAGTGGAGAGATGGGAAAGGTAG 5473 29 100.0 32 ............................. AGGACGGCGAGCTGATCGCCGGACACGGTCGA 5534 29 100.0 32 ............................. GGATACAAATCCAAACAGCGAGCCATTTTCCT 5595 29 100.0 32 ............................. TTTATCGGACCGGGCGCGGACACGCAGACAAC 5656 29 100.0 32 ............................. GCGGGTTAGTTATCCATGGTGCATAGGGGCGA 5717 29 100.0 32 ............................. TCACTTGATAGTTTATCTCGCCGCCGTGGCGC 5778 29 100.0 32 ............................. GTGCGGAACAAACCAGTAGGTGTCCAGGTCGT 5839 29 96.6 32 ............................T TTTTTTGACGCGTTCGGACTTCAGGTAATATT 5900 29 100.0 32 ............................. GGTTTACCAGCGGTAAAACAGCAGGAAGGAGA 5961 29 100.0 32 ............................. GTCAGATCACGTCAACCACGCTTGATTTTACC 6022 29 100.0 32 ............................. CTCACTAACGCCGTTGCCTGCGATAGCTGATG 6083 29 100.0 32 ............................. GTGATCGGCCCGGCAATGCGTGAGCTAATCAA 6144 29 100.0 32 ............................. TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 6205 29 100.0 32 ............................. CGTTTAACGCAGTGCGAAAAATTACGACACCA 6266 29 100.0 32 ............................. AACTGAATGTTCCAAATCCGGTTGGACGACCA 6327 29 100.0 32 ............................. TTCAGCAGCGCGCTCGTCCCCCTCCTGTCGGA 6388 29 100.0 32 ............................. CTCGGTGACCGGCAGATCGTTTTGAAACACAT 6449 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 6510 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 6571 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 6632 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 6693 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 6754 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 6815 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 6876 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 6937 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 6998 29 100.0 32 ............................. AACGTAATTGGCTTACGGGGCGGTCGGCACAA 7059 29 100.0 32 ............................. TCGCCGCCTGTTTTTGTCTCTTTCCGGGTGAG 7120 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 7181 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 7242 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 7303 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 7364 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 7425 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 7486 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 7547 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 7605 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGTGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //