Array 1 357-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOWC01000002.1 Haloferax alexandrinus strain pws11 Scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 356 30 100.0 36 .............................. TCGACATCCGAGTTTGTGTCGATAGTCACGACACCA 290 30 100.0 35 .............................. AACCTCTGCCGAGGACGGCGCAGGGAGTGGCCTCG 225 30 100.0 36 .............................. TATGTCAACTGCCACACGCCAAACCTATCCGTGCAA 159 30 100.0 34 .............................. TACCTCGGGGAGAACGAGAACGGAACGCGGGCGC 95 30 100.0 34 .............................. CGCGTCGGCGCGACGAACGGCATCGAAACCGAGT 31 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 100.0 35 GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Left flank : ACTCGCTCTACGAGATGACCGCGAGCATCAACAG # Right flank : CC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1636411-1635596 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOWC01000001.1 Haloferax alexandrinus strain pws11 Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1636410 30 100.0 35 .............................. GCGGGTCGTCAACCGAGGGGGGAGGGACTGCATTT 1636345 30 100.0 35 .............................. ACGAACAGAAATGGACGGCAGTTAGTCGTCTTCGA 1636280 30 100.0 37 .............................. GGCTGTCGGTGGCGTCGGTGACGAGGCGAAGCCGCCA 1636213 30 100.0 37 .............................. CGCCGTCGGTCACCGCGACCGGGTCGCTCTCGTCAGA 1636146 30 100.0 35 .............................. GGACTCTCCCCGCATCGGTGACTGGTGGTGGTGGC 1636081 30 100.0 35 .............................. ATCAATGAGTTCCTCGCCAACTATCCGATTCTGTT 1636016 30 100.0 33 .............................. GACTTCGGAACTAACTGCGTAGCCTTCCATTGT 1635953 30 100.0 37 .............................. TTAATTACCTCATGCCCGTTGTGCCACTCTCTAATTG 1635886 30 100.0 37 .............................. ACTTAAAGATGCAAACAAAGCGGTGTTAGAGAACGAC 1635819 30 100.0 35 .............................. GACGAATGGGAGCCGACAGAGGCCAACGGCTTCGA 1635754 30 100.0 35 .............................. TTACACATTATCAGCATCAACGGACGGCGGGCCTA 1635689 30 100.0 34 .............................. GCCATCGGAGTAGACTGCGACCTCGTCGTCGCCC 1635625 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 100.0 36 GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Left flank : ACGCTCGAACGAACCGTCGAGCATCCGAAGCTCAACCGCAAAGTGAGCTATCAGTACCTGATGCGGCTCGAAGCGTACAAACTCAAAAAGCATCTGCTGACCGGAGAGGAGTACGAGCCCTTCGAACGGTGGTGGTGAAATGTACGTCGTGATGGTGTACGACCTCGAAGCCGAACGGACGCACAAAGCGCTCAAACTTGGGCGACGCTATCTGACGCACGTTCAGAACTCCGTGCTCGAAGGCGAGATTTCCGAAGGTGACTTAGCGACGCTTCGAAACGAGGTCGAAGACCTGTTGAAGCCGGGTGAGTCAACGATCATCTACGAACTGTCCTCGGACACACTTCTCGACCGCTCGGTCTACGGCGACGACCCGACCGACGAGAAACGCTTCCTCTGACTTCCGTCGACCCCCCGGTCGGCTCGGGTTACTGACGGTCGACGGAACTTCTTTATCGTAGTCTTTCTTTAGAGGGCCTGTGTCCGTGATATCGGGCATG # Right flank : TGATTCGTGAGTGTCATGCGTCGAGTGTGTCGTTCGCATTCATCCGAAATGCCTTGGACCACTTAAGGCCGTCGTATCGTGGCGACCCCCGGGAAGGTGTGTCATCCCGGTGAGCGCCTGACGACCTTGGGGTCGGGGGCGTTCGGTGGAAGCCTTCGGGGGGAGTACCCCCGTGCGCTTCTTCGCATTAATCCGAATGCCCGGGATACATTTAACCCCGTTGATTTAGTGGCTCTGTGAGAAAAATAGACACGAGGCGTGCCATAACTTCACGCGCGGTCAGTTGTGACATCAATTCGGTCGAGCGAGAAATCAATGTATTAGTTTCGCGTGCGTGCGAAGGGCCAACAGAATCGACCCGTTGAAGTCGGTTTATAACGGGTCGCTTTATAAGGCCGGAGGTACGATTCACGTGCGAGCAATGAGTGGGCCGGCAGACTCCATCGAGATTCAGAACGTAGTCGCATCGACCGGGATCGGTCAGGAGCTCGACCTCGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1647046-1646744 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOWC01000001.1 Haloferax alexandrinus strain pws11 Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 1647045 30 100.0 37 .............................. CGAGCGGGGACTGGCGTCTCATCGCGGAGGCGTTGCC 1646978 30 100.0 43 .............................. GCTTGAGAGACACGTCCATCCGACGCCTCTTAAATCCATGTGC 1646905 30 100.0 35 .............................. GATACGACTTGGAGCAACTATGACTCCAGAAGAAC 1646840 30 100.0 37 .............................. GAATTGCTCGACCGGAAAACAATGCGCAAACTCTCGC 1646773 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 5 30 100.0 38 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : CGTCGTCGGCACCTCCGTCGACCGCATCCGCGAGCGCCTCGTCGGCGACGTCCACACCTACGGCGGCCGCTCGACCATCGGCGACTGGTACCGGACGAACCGCGCGCTCCGCGAGCGCATCGACGACCTGCTCGACTCCGCGTGCGAACGCCCGTACTTCGACGCCGACGAGATTCGCCGCCTCCAGCGCGAGGAGCGCACGGGCGAAGCCGAACACATGAGCGCCATCTCCGGCATCATCACCGGCGAGCTCTGGGTCCGCAAATACATCGACCGCGAAGGTCGCGGCGTCGAGGAAGGTCCCGTCGGTGCGGCGGAAGCCGAAGACGCGCCGCAACCGGCCGACTGAGTTACTCGAACCACTCGATGGACTGTCCAGTCGTGTGGAACTGCGGTTCGTTTCCGTCGACCCCCCGGGGAAGCGAGGACTACTGAGGGTCGACGGAAACGTTCTTTTGAATTCGGTTCGTACGCGACGTTACGCCCGTGATTTCGGGACG # Right flank : ACTAATTGCGACAGTCTAAAAATGTAATGTCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGGCGAGCGCCGCGACGCGCAACCGCCTGCTTGTTTCAGACGAACCCTTGTGGGATTGAAGCTCACGTCCCGAGGCGGCCGAGGCGCTCGACGTGAGCGTGTTTCAGACGAACCCTTGTGGGATTGAAGCGAATTACCCTGTCAATGCGTGCTTAATACTCTCCGAGTTTCAGACGAACCCTTGTGGGATTGAAGCCGCTCGAAGGCCTTGCGAACTCGACATGATGTCATGCGTTTCAGACGAACCCTTGTGGGATTGAAGCTCCCGACCGTCACGGCGCTCGGTCCTGATGAATCCCAGTTTCAGACGAACCCTTGTGGGATTGAAGCGTCTCGGTCCACATGAGGGCCGTTCCTA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1930479-1930056 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOWC01000001.1 Haloferax alexandrinus strain pws11 Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1930478 30 100.0 35 .............................. ACCGACGTGATTTTCTCGTCGGGGAATATCGAAAT 1930413 30 100.0 37 .............................. ACTGAGGTCGCTTGCAAGTACCATTATTGGATGAGTT 1930346 30 100.0 36 .............................. ATGGTTAGGCCACGTTGAGGGTGAAGTCTTCTTCGT 1930280 30 100.0 34 .............................. CGTGGTCCTCGAGACGGAGGACTATCGGACGCTC 1930216 30 100.0 37 .............................. GATTGCGAATCGTTTGTCGTCGTTGTCAGCCATTATC 1930149 30 96.7 34 ...................G.......... GGCACCTACGACCGCCGCTACAACGACGACCCGC 1930085 30 80.0 0 .......G.......G...G..A..A..T. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 96.7 36 GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Left flank : TCGCGTATGTGGGGGAAACTCTGAGATGGACCTCTTCAGCGCGCTCACCGACCTCTTCGGTATTGTCGGCCTCGCTGCCGGGGTGGCAGCGACCGGCTCTGCCCTCGTTGGCCTCTACATCGGCGGCCAGGCCTATCGCGGGCTCCGACGCAACGACGACCCCTCCATGCGGTACCTCTCGATCGGGATGATCCTGCTCTTCGGCGTGACGTACGTCCTGGCGGTGGCTGGACAGGGACTCTTCATGTTCCGCATCGCTCCGATCCGCTACCAGAACGTGTTCCGACTGATCGTCCGCCTCCTCCAGTTTGGCGGACTCCTGTTGATCGCCTACTCCCTGCGTATCGCGACCGACGATCGGTCGACGCCCCCATAGCCGCCCACAACCGCTGACGCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GAAAACTCGTCGGGACGAAAACACCCGAAAGAAACAGACTCGGGCGCTACGCCGCCTCGGCGTACATCGCCACCAGCTCGTCCGCGTTCGACTGCCACGAGTAGCGCTCTTCGATGGCCGAGCGGTTCGTCCGACCCATGCGGACGGCTTCCGCGGGGTCGGAGACGAGTCGGGCGAGCGCCCGCGCCAGTTCCTCGGCGTCGCCGGGTGCGACGAGAATCCCGCGGTCGTCGGTGATGACCTCGGGGATGCTGCCGACGGGCGTGGTCACGATGGCGTTGCCGCCGGCCATGCCTTCGAGCATGGCGATTGGAAGCCCCTCGGCGTAAGTCGGGAGGACGAACACGGTTCCGCGGCTGATGAGGTCGCGTTTGTCTTCCTCGGAGAGGAAGCCGAGGTACGAGACGTTGTCGTGGGCGGCGGCGACCGCCTCGGCGCGGTCGGCGTGGGGGCCGCGGCCGCCGATGCTCACCACGAAGTCGAGGCCGGGCGTGGATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 3267896-3267339 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOWC01000001.1 Haloferax alexandrinus strain pws11 Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3267895 30 100.0 34 .............................. GACTGATGTACCGGCGTCAGACCTCTGACGGCGA 3267831 30 100.0 37 .............................. CGGCTGTACTCGGGGAGTCGGACCTCGCGGACGAGCG 3267764 30 100.0 38 .............................. CTGAACCTCTCGCAGACGCAGACCGTCGCGGCGGGGTT 3267696 30 100.0 34 .............................. GAACTCATCCAGCGCTCGCGTGAGTTCGTTACTC 3267632 30 100.0 36 .............................. TTCGACAACACGCTCTCGTCGCCGCAGGGCTATCTT 3267566 30 100.0 35 .............................. GCGTAGAAATCGTAGACAGTCGCGTTTGCGACTGT 3267501 30 100.0 34 .............................. GTCCTGTCGAACCTCACGAGAGCGGAGACAGACG 3267437 30 100.0 39 .............................. GGTAACCGCCATAGAGATTGGCCGTCGCCTGCCCCGACG 3267368 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 9 30 100.0 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : ACACCACGGGCGAGCACGCACACGGGAAGCAACGTGAGACGTGGCTTCCCATCGACCTCGAAGCGCGAATCAATCGCTACGTTCAGGACGACGACAACGACATCGGCCCGAACGACCCTGTCGTCCAGCGCTCGAAGCGAACTCTCCAAGGCTGGGTCGACCGCGCCGCCGACGCAGCTGCGGACGCGACCGGTGACGACGACTACCGACGGGTGTCCAGTCACGATCTGCGCCGCTGCTGGGCACATCATCTGCTCGTCGAGGAAGGAGTATCGCCGCGAATCGTGATGGCACTCGGCGGCTGGTCCAGTTACGACGCTATCGAACCCTATCTCGCAGCGCCGTCAGAAGAGAACATCATCAAGTCGATGAGCGAGGTCTCGCTCTGAGTTCCAGAAACTTCCGTCGACCCCCCGGGGGTTCAGGAGGAATTGAGGGTCGACGGAAACGTTGATGTGAATTCGCCACGTACAGTCGCCTACCCCCGTGAATTCGGGACG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATCCGTTAGCCACGCGAACAGTCGTTTCAGACGAACCCTTGTGGGGTTGAAGCACCAACGATGACGCTCAAACGCACCATCTTCCCGCAGTTTCAGACGAACCCTTGTGGGGTTGAAGCGTCCGTGAGAAGATTGACGAGCAGATAGAGCATGGTTGAGTTTCAGACGAACCCTTGTGGGGTTGAAGCCGGTGGGAGCTCGAATAATGGCTGCACGCAAGAACCTCAGTTTCAGACGAACCCTTGTGGGGTTGAAGCGCCTCCCGCTGGACCAACTCGAGGCGGGAGAGGTGGTTTCAGACGAACCCTTGTGGGGTTGAAGCCGTACACACACCAAACGCTCGTGGTACTTCAGCAGTTACAGACGAACCCTTGTGGGGTTGAAACTCAACGCCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 3303830-3302907 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOWC01000001.1 Haloferax alexandrinus strain pws11 Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3303829 30 100.0 38 .............................. GTTCCCTACCGCGCCCGCGGTCGTGGCATCCAAGTCGT 3303761 30 100.0 35 .............................. GCGAGAGACACCACCGAAAGCGATTAGCGAATATC 3303696 30 100.0 36 .............................. CTGCAGCTGTGTCTCGCGGCCTTCGGGGCGGGCAAA 3303630 30 100.0 35 .............................. TTTGAATGGCCGCAGAGTTGGGTGGATAGCCCCGA 3303565 30 100.0 35 .............................. CCTCCAGGAGCAGGTGGTCGAGGAGGTCGACGAGA 3303500 30 100.0 36 .............................. AGCTTTGACGCGATTGAGGCTAGCGAGTTCACGGTC 3303434 30 100.0 36 .............................. TCAAGCAGAACCTGTTCTGGGCGCTCGGCTACAACA 3303368 30 100.0 35 .............................. AAGCTGGCTAGTCCGGCACTCCCGATTAGCGGCCC 3303303 30 100.0 1 .............................. C Deletion [3303273] 3303272 30 100.0 38 .............................. GCTTGGGACGCTCTTAGTCAATGGTGTGGACGCGACGA 3303204 30 100.0 37 .............................. CGAGCACGACCCTGCGCCGTTCCGCGTCGTCCTCGAC 3303137 30 100.0 35 .............................. CGCCGGCTCGACAACGGCGCGCCCGGCCGCTTCCG 3303072 30 100.0 38 .............................. CTCATCACACGCGGCAAGTGCGTGGTCGATGGCGTCCA 3303004 30 100.0 38 .............................. CGTCTGTCTCAAGAGTCATTGTTCTATCTCCTCTGCGA 3302936 30 76.7 0 ...............G.A.C.AAG.....A | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 98.4 34 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CCCGCTCGTCGGTGAGTCGCTCACCGACTTCCGCGGCGTCGTCTACGCGCCCTCCATCATCGACAACTTCGAGGCGCTCCGCGCCGGCGAGCGCTCGTTCGACGAGATTGCCGCACCGACGATGACGCTCGCCGCCGACACGAACGTCAGCGACGCGTTCGACCAGTTCCAAGCCGAGGACCAGGAACTCGCGCTCGTCCTGCGGGACGGCGAGGTCGTCGGCCTCCTCACCGCGACCGACGCCCTCGAAGCGGTCATGGGCGAACTCGACGATCCGCTCGACTAGCGCTCTCGACGCTCCCCCTCGAATTTTTTCGGCGTGCGGCCGCGCCCCGCGGACGAGCCGACCGCGTGACGACTGCCCGAGTGGTTCTCGACACCGCCAGTGACGACCCGACGTTTTCGTCGACCCCCCGGGGGTTGCGGGTGTATTGAGGGTCGACGGAAACACTCTTTTGAATTCGGGTGATACACGTCATTGTACCCGTGAATTCGGGATG # Right flank : ATCAGGAGACGGCATTGCGATGCCCGTATTAGTCAATCACGTACTGAAATCGAAGAATGCCCGGGGTGGGCTCCGAACCCACGATCTCCGCATGTCCCAGGTGCGAGGCCGGCATGACCTCGCGGGGGGCGGAGGCTTCCAAGGCGTTCCGCACCGATTGTGAAACCCTATGAGTGCGGCGCTATGTCCAGCTAAGCCACCCGGGCTCAACTTCCCGTTGTGTGCTGGTTGTATTTAAGCTTCTCATCTCCGACGACCGCGGGACGGGTCACCACGGCACTCGATTCGAGTCATCACCCGCGGATTTATGTCCCAACACCGGGTGCACACACGCATGAGCCAACCGGAGATCGTCCAGTCCGTCCTCGGAGAGGAAGACGTGGTGACCCGCGTCCACCTCGGGGGCGAGGACGAACTGTTTGTAACTCCGACGCGGACGCTCGTCTATCGGGCCGAAGGCCTCCTCTCGGACGAGTCCGTCGACGAGTTCTCGCACGCTG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //