Array 1 2780-29 **** Predicted by CRISPRDetect 2.4 *** >NC_022084.1 Thermococcus litoralis DSM 5473, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 2779 30 100.0 39 .............................. ACTCTCCACGTAGTAACTTAGCTTCGTCCCGTTCTCATC 2710 30 100.0 38 .............................. AATATGTTGTGCCTAAAAAAGTTTATTGCCGCTTCAAG 2642 30 100.0 40 .............................. ATGCTTGGAAGACTGTTTGACCACCAAAGAGAACTTTTAA 2572 30 100.0 38 .............................. ACTTGCAAGGTTAAGTGTTTCTCCAGGTGTCCTTCTTG 2504 30 100.0 37 .............................. AAAACTTCTACCATTAAACATCCAACTATCAACTTCA 2437 30 100.0 39 .............................. GATTGTCTTTAATTTGGATTTCGGCGTCCGGAACACCAC 2368 30 100.0 36 .............................. TCCATATACCTAACGGTGTGATAACTTCAAGAGCTA 2302 30 100.0 34 .............................. AAATACTAAGAATAAACGCCGTTCTTAATCTACC 2238 30 100.0 35 .............................. CCTTATACGTAACTCAGCGCCGCTTATTGTAAAGG 2173 30 100.0 41 .............................. TCTTTTCTAGTGCTTTAGCCCATGCGTTAAGCTCGGACTGG 2102 30 100.0 35 .............................. TTCGTCTTCTTCGTCTTCATTTTGTAGAACGGCTT 2037 30 100.0 38 .............................. GTATGAATGCTAGCCCGTAGCCGCCCCGTCCGAACCGG 1969 30 100.0 39 .............................. AAATTTTTTAATGTTTCTCAATGTTCATTAATGTTTTAA 1900 30 100.0 41 .............................. AAAGGTACCGCCTTCGAAATAGTCGCGGACGGCGTCGTAAA 1829 30 100.0 36 .............................. ACATTTATATGAGAGATAAGAGCGGGGAAAGGCTAG 1763 30 100.0 36 .............................. TCGATAATTCCGCGACGATAAAAACGGATTTAGTCG 1697 30 100.0 38 .............................. TCATTCACCGCCCCCGAATTTCGTTTCTAGGTATTCTT 1629 30 100.0 37 .............................. AGATTTTATAGACTGTACAGCATGGGTTAAAGTCTAT 1562 30 100.0 36 .............................. AAAATCTGCATTATTTGGGCGGTCGTTGCCCCTCTA 1496 30 100.0 38 .............................. TTCTAGCCATCCGGCTTTAGGGACTCTAGTTTCGCCCC 1428 30 100.0 41 .............................. CCAAAAGACCTAGAAACCCTATTAGCTAACATAAGGGGGAA 1357 30 100.0 43 .............................. TTCTTTAACAATAGTTCGACGTCCTCTTCGGTCGCGTTCCCGT 1284 30 100.0 38 .............................. TCTTCATTTAAAGCCCCATCGGCCGTTAAAGAATAACT 1216 30 100.0 36 .............................. TAAGCCCGGCGGTTCGTTCTAATATATCGGAATTTG 1150 30 100.0 36 .............................. TTAAAAGAAGACAAAAGCATAATTAACAAAAAGGTG 1084 30 100.0 38 .............................. CCTTAAGGCGGGTACTTAGGGGGCGACTTACGGCGCCC 1016 30 100.0 43 .............................. AAATTTGCCTTTATCCGTTACTTTCCATTCGACCGAAAATTCC 943 30 100.0 39 .............................. AGCATTACAAGAGAGCATAGCCATAATGGGCGACGTAGA 874 30 100.0 38 .............................. TTCGTGATGGCATGGAATAATATTTCTATGCCATCCGT 806 30 100.0 38 .............................. TCATTCACCGCCCCCGAATTTCGTTTCTAGGTATTCTT 738 30 100.0 37 .............................. AGATTTTATAGACTGTACAGCATGGGTTAAAGTCTAT 671 30 100.0 36 .............................. AAAATCTGCATTATTTGGGCGGTCGTTGCCCCTCTA 605 30 100.0 37 .............................. TTCTAGCCATCCGGCTTTAGGGACTCTAGTTTCGCCC 538 30 93.3 38 ............................GC CAAAAGACCTAGAAACCCTATAGCTAACATAAGGGGGA 470 30 96.7 43 A............................. TTCTTTAACAATAGTTCGACGTCCTCTTCGGTCGCGTTCCCGT 397 30 100.0 40 .............................. TAGGTATGCTTGCGAGCGCATTTACTGTCTGCTCTACTGT 327 30 100.0 39 .............................. TCGTTGTATAGGTTGATTGCTCCCTGAGTTCTTTTTCAA 258 30 100.0 37 .............................. AACAGCAAGACCAACCCAATTGTTACGAGTTGTCTTT 191 30 100.0 36 .............................. TATAGTAAAATCGCCGCGAAATCTCAAGCAAGTTTA 125 30 100.0 37 .............................. TCAAGAGCGCAGTTTTTTCATTCAAAGCCATCAAGCT 58 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 41 30 99.8 38 GTTCCAATAAGACTTTAGAAGAATTGAAAG # Left flank : ACAAGCTTTCTTTTATGTTTTTTGGAATGTTATCACGTTAGAATAGTCCTATTTTTAGTTCACTCTTGTATTGAGGAATTAAATTTAAAATCATTCTATAAGAGGGTTCTAGAAGTCTTTAGTAACTATAAGTTACTATCAAACAGGAGGTTATGATATTTTGAGGTTTTTGTAACGAAATTTTTTCGGAATTTTGAACAGGGTCTTTTTAGGGCTTCTCTGATATCCTCTCCTCGTGGAAATTTAACCTTTTTTAGTTCAAAGTGTTTTTATTAGCTTATTTTTGATTTTGGCTTTTATTTTGTCTCTGGAAGTCTCATGGACAAGATTGGACATGGAGGAAAAAAGAGTAAGTTCAGGCGAGTGAGTGCTTTGAAGTCTTCTCTAGTGGCTTGGATTCGAGCTTTTTGAGGGGATTTTTATTGACCCTTTATGGAAAGGCTTATAAGATTTGGGCTTTCTAATTACTTTGTAGGGAGTTTAGAGGAAAATTCGCCCCT # Right flank : GTCTATTTTCACCTCCTCCTTTTGGTTCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAGAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 2 208872-212274 **** Predicted by CRISPRDetect 2.4 *** >NC_022084.1 Thermococcus litoralis DSM 5473, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 208872 30 100.0 36 .............................. AGTTGGTCTTTTTTCTATACCGTATTCTTCCGCCCC 208938 30 100.0 37 .............................. GAGGATACCCAGCCATTCTGGAAACATAAGTTCGAAA 209005 30 100.0 37 .............................. TTTCTTACTCCCAACATTTCAGCATTTCTAACTAATC 209072 30 100.0 37 .............................. CTTTTCAAATTCATGGTATCTCTGCCTTGCTTCATGG 209139 30 100.0 38 .............................. TTGAAGACCTTTGGGGGTCTCTGGCATGATGTCATCAA 209207 30 100.0 37 .............................. ACAGCTTCATCTAACTTGACGACAATCTCGACATCAG 209274 30 100.0 42 .............................. ACTTCTTTTCCACAGATACTACATTTCTTCTTTTCTTCCATA 209346 30 100.0 32 .............................. AGGGGGGACGCTAGAACCCCTTAAAATATTGA 209408 30 100.0 37 .............................. TTCTTTTAGTTTCTTGAACGTTATTTCTATTTCTCTT 209475 30 100.0 38 .............................. TAAAATATTGAAAAAAGAAGTTACGACGGATTTAGAAA 209543 30 100.0 36 .............................. AAAATGGATTATTAGCCGACGGGGGCGGTACCGATG 209609 30 100.0 37 .............................. AAAACCGTAGCTACGGGTATTTTGTTCCCTTCCGGGG 209676 30 100.0 34 .............................. AAAGCTGGGGAGAGTGATTAAATGAAAATGAAAG 209740 30 100.0 37 .............................. AGAATATTCCATCTCTAGCGCACGGCTATAAATTTCC 209807 30 100.0 38 .............................. CTAGCTTCGTCAATGATATAAAGCAAATAGGGGGCATG 209875 30 100.0 38 .............................. AAACATTTTCCACGAAAAGGCTACCCTAGTGGGCATGA 209943 30 100.0 37 .............................. ATATTCTAAATTTATCGAATTCTTAGAAGACTACCTA 210010 30 100.0 37 .............................. GCCGACGACGTGGACGGCTAGAGAAGCGTTAAATTTA 210077 30 100.0 36 .............................. TTCTTTAACAATAGTTCGACGTCCTCTTCGGTCGCG 210143 30 100.0 47 .............................. GAATTCCCCCGCCCCGGATTTTTCCCCGCGCTAAAGCCGCTATTAGC 210220 30 100.0 37 .............................. AGTTACTACTACAGTAACGAACGACACCGCTAGGTTT 210287 30 100.0 37 .............................. TAGGTCTTTTGAAATTTGAGGTATACCTTTACCGTTT 210354 30 100.0 40 .............................. CGGTCTAAAGGGACGCGTTCACCGTCTAAGTCCGCACAAA 210424 30 100.0 43 .............................. TAGGGTCTTAATGTTTCAACGAGAATAATGAGGTCAATCGAAG 210497 30 100.0 41 .............................. TCAACCAGCTTGAGTATCAGGGCGATTGTAATTGCGAGAGC 210568 30 100.0 38 .............................. ATGTCTCTCATTCTCTCTGTTTTTTCACCGCTGACACC 210636 30 100.0 38 .............................. GAAGAGATCGATGCAAACTATGTTCTCCACCAATTGGA 210704 30 100.0 36 .............................. TATTGAAAACGACCCCGTGAGTAAAAAGGCAACTCT 210770 30 100.0 38 .............................. GAGCTTGGGTATCTAAAGACAAGTGTCGAGCCGTCTTG 210838 30 100.0 38 .............................. CTTTAAGCTGGGAGATTTACGTAGAGGTTGATGCATAC 210906 30 100.0 38 .............................. CACTTCCTCCGGTAAAGCCCCTTCACTTACCAAGTCGC 210974 30 100.0 37 .............................. GTAAGTCGTAGTTCACAAGGTCGCTTTGGAGCTTAGA 211041 30 100.0 37 .............................. AATTTGAAGCAACTTTTAGTTCTGCTGATGGGCTTAC 211108 30 100.0 37 .............................. GTCTGGTTCGCTAAGCACTTCTTGTGCTACGTCATCG 211175 30 100.0 36 .............................. TGCATTGACCCTTGCAGAGAATGTGAAATGATCCGT 211241 30 100.0 37 .............................. ATTCATATTTTTCTCAGCATCTATTTTATGGCTTAAC 211308 30 100.0 36 .............................. AGAATTGGAGCACCAGCGTAGTAGGCAATTGAGAGT 211374 30 100.0 37 .............................. AAGCTCTTTACGATTTCAACGACTTCATACGGGATGT 211441 30 100.0 37 .............................. CGGATGGACTCACTGGACAAAGTGCGGTTACTGAATA 211508 30 100.0 37 .............................. TAGGAAATCCCTCTTTAGAGTCCCAATGATTGCAGAG 211575 30 100.0 37 .............................. GGAATGATGAAGAATATTAGGCCAACCCCTATCACGA 211642 30 100.0 40 .............................. ATAGGCCGATGCCTTGACATCAACGTGCCGTGGAATCCAC 211712 30 100.0 36 .............................. ATCAATTGAAGGCTTGAAGAGGCCGCGTCCGCTTGG 211778 30 100.0 35 .............................. TCGCATAGGCTTCCAAAAGGTCTTCCGGCTTGCGG 211843 30 100.0 39 .............................. TCCTTCGCCGTCAAGGCCTTTCGTCTGATGCTTTCCTCA 211912 30 100.0 35 .............................. TGAGTGGTGGGATGAGAACGTGTACTAACCCTTCT 211977 30 100.0 37 .............................. ACGTTTGGGACAAAGTTTAGGGACACGGGAACAGTAG 212044 30 100.0 36 .............................. ACAGGACTAAGCGGGGCAGTTTACGAGGGCTATATT 212110 30 96.7 37 .............................A GTTATCCTCGAAGTATTCTCTCTCGTAATCCCCGTAG 212177 30 93.3 38 .................G...........A ACCCACTTTCCGAACACTGTTATCATGTCATCGATGTT 212245 30 96.7 0 .................G............ | ========== ====== ====== ====== ============================== =============================================== ================== 51 30 99.7 37 GTTCCAATAAGACTTTAAAAGAATTGAAAG # Left flank : ACTACGTGAGCGAATAGCCGAAGATTCTTTGTATCACGTTTAGCTTTTCCTTTTTTGGATTTTCTTTCTTCTGGTGGGCCAGTTTTGATGTTAAGGCTCTAAGGTTGCTCTGGAAGCCTTTAGTAACTAAAAGTTATTATCAAACAGGAGGTTATGATATTTTGAGGTTTTTGTAACGAAATTTTTTCGGAATTTTGAGCGGAAGCTCCTCAGGAATCCTTTGATATTCTCTCCTCGTGGAAATTTAATTTTTTTGGATTTAATGATGTTTTAAGGCTTTGTTTTTGATTTTGGCTTTTATTTTGTCTCTGGAAGTCTTATGAACATTTTTGTGCATGAAAGAAAAGTAGTAAATTCAGGCGAGTGAGTGCTTTGAAGTCTTTTCTGAAAGCTGGAATTCAAGCCAGTTGAAGGGAGTTTTATTGACCCTTTGTGGAAAGGCTTATAAATTTCAAGCTTTCTAATTACTTTATAGGGAGTTTAGAGGAAAATTCGCCCCG # Right flank : GACCCGAAGCCCCTTAGCGACCGAGTAGAGCTTGAAAGACCCACCTCAAAAACAAAATTGCACTACTTCTGGGCAACTTTGTTAATGAGCCTCAAAATGTAGGTGTTCTCTTCAACGGTTGTTGCTCCCCTGTTTCTTGGGATGCCCAGGTCGATAGTAGCTCTAATCCCATATTCCTTGAGAAAATCGTGAGCCTTTGCTTTTATACTCCCATACTCACTCCTTTTTATCAGTCCATAGACCGTTGGTCCCCAGGAGCTCTGCCCATAGCCGTATGTGTTCTCACTCAGGAACTCCATGATGAGCTTAACATCCTCTCTGAACTCTCCACCTTGATACTCTTCAAAATGCTTCCCAACCAGTTTTTGAATTTCACTCAAATGCTTTCCAAACTCTTCGATGTTTTTCTCCTTTAACGCCGGCAACAGCCCCAAAAGAACTCTGTGGGAGATTTTCTCCGCTATGCTGCTTTCCCCTTTCACGCTCTGCATTATTGGTTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 3 406450-408746 **** Predicted by CRISPRDetect 2.4 *** >NC_022084.1 Thermococcus litoralis DSM 5473, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 406450 30 100.0 39 .............................. TAGAAAGAAAAGAGGTCAGTGATTTTGTTTCAAGTATAA 406519 30 100.0 36 .............................. ATATTAAAGATTCCCCTACCGTTAACCCGTCTAAAA 406585 30 100.0 37 .............................. TCATTAGCCAGATAGACACCATAGAACACCTAAAAAC 406652 30 100.0 37 .............................. GAATTCGAAGTTTTAGTCGTAAAAGACAAAGAAGAAG 406719 30 100.0 37 .............................. TCAACGAACCAACACCATACACCACGAACGTACCCCT 406786 30 100.0 39 .............................. CACGTGATAACATAGTCCCCGCGGCGGGGTCGTTAAATA 406855 30 100.0 38 .............................. TTTCCATACAGTTGACCGGGAATTCCCCCTTATGTTAG 406923 30 100.0 40 .............................. TTTCTCGAAATTGATTTTTAAGCCCACGTGGGCGTAGTAA 406993 30 100.0 36 .............................. AATAAATTCTACTACTTCGTCAAGTACATTTTACAA 407059 30 100.0 38 .............................. CGAATTTTCGGGCGTATTCTTCTATTAGCTCTATCACT 407127 30 100.0 43 .............................. TATTTTATGGCAGTGACTTAATAAGCGTTAGGTTTTGCCGGAA 407200 30 100.0 37 .............................. TGATAAACCCCCCTGTATTTGCCGCCCCGAACCGGTG 407267 30 100.0 40 .............................. TAAAATACATTGACCTAGAACTTTTAAGCATGCTAGAAAA 407337 30 100.0 37 .............................. AAAATAACGGGGTTCACGTGAATGTTTAGCCCCTTTT 407404 30 100.0 40 .............................. ATTGCACCCGTATTATTTCCCTTTGTGTCGTCCATGCTTC 407474 30 100.0 38 .............................. TTATTTAACCCATTTAAACCCATTTAATACGGCTTTTC 407542 30 100.0 36 .............................. ATGGGTGCCGGGAATCAATGAAAACTTAAAAATCCA 407608 30 100.0 37 .............................. TTAGAATAGTGTACACTTTTTAACTAAAAAATGAACG 407675 30 100.0 38 .............................. AGCGACTTCTCAATGGACACGCCCGTCGCGAGGTTCGT 407743 30 100.0 38 .............................. CACTACTTCGGTCACTTGATCAGAGAGCCATTCTGCAA 407811 30 100.0 46 .............................. GTGTTTTTGCGATGTATTCAATCTTCATGCGAGTAAATGAGGAAAA 407887 30 100.0 43 .............................. ACTATCCCGCTTTGTGAGGTTTTAGACGCTACGAACTGTTCCA 407960 30 100.0 38 .............................. TCATGAAACTCATCACCATAATGAAACTTAGTTTCATT 408028 30 100.0 37 .............................. TTCACTTTAACCACCACTTGATGCCTAACCTCTTTAC 408095 30 100.0 43 .............................. CCCATTACCCCTCCTTTGAATGTCACGCTCTCGAAGGGTTTTG 408168 30 100.0 38 .............................. AATTTCATTAAGGTTCTCATCGTATTTTTTGATAATAA 408236 30 100.0 39 .............................. AAGTCCTTTTGCTAATGCGATAGCTTCGTTTACCTTCTC 408305 30 100.0 43 .............................. TTTTTTTGTTAATTCCCTGAAGATAATTGGGATATTACCACCC 408378 30 100.0 37 .............................. AACCTCAATTGCTTGTTTTATTCCTTTCCTAAATTGC 408445 30 100.0 39 .............................. TAGAACTTATGAAAGCTATGTAATTGAAGAGCAGAAAGA 408514 30 100.0 37 .............................. CAGTAAACTTAACCACGTGTTGAATGTTCTTTTTAAT 408581 30 100.0 39 .............................. AGCCCTTTCCCCTAACATCCGCTACCTTTTTGCCCAAAT 408650 30 96.7 37 .............................G TTTCGATGCCCTTAACGTAACTCCCCTCTATTACGGG 408717 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ============================================== ================== 34 30 99.8 39 GTTCCAATAAGACTTTAAAAGAATTGAAAT # Left flank : GAAAACTCAAAATGCTTATCGAATAGTCCCGTATCACGTTTAGCTTTTCCTTTTTTGGGTTTTCTTTCTTCTGGTGGGCCAGTTTTGATGTTAAGGCTCTAAGGTTGCTCTGGAAGCCTTTAGTAACTGAAAGTTACTATCAGACAGAGAGTTATAAAATTTTGAGGTTTTTGTAACGAAATTTTTTCGGAATTTTGAGCGGAAGCTCCTCAGGAATCCTTTGATATTTTCTCCTCATGAAAATTCGACCATTTTTAGTTCAAAGTGTTTTTATTAGCTTATTTTTGGTTTAGGCTTTTGTTTTGTCTCTGGAAGTCTTGTGAACATTTTTGTGCATGAAAGAAAAGTAGTAGGTTCAGGTGAGTGAGTGCTTTGAAGTCTTTTCTAGTGGCTTGGATTCGAGCCTTCTTATGGCTGTTTTATTGACCCTTTGTGGAAAGGCTTATAAATTTCAAGCTCTCTAATAGTTTTGTAGGGGATTTAAAGGAAAATTCGCCCCT # Right flank : GAGTGGAACTTTCGGGGGTTCCTGGACTGCTGTAATAATGTTCCAATAAAACTTCAAAAAGCTCTTTTGTTCCAATCTTCTGCCATGCAGTTGAACGTTTGTCACATGAATTGGGAAAAATTTCTTGGCAATACTCAATATAGACGAAAAATATTCCGTAAAATTTATATTCTGTCGATGAATATTCACAGTTGAGGTAGTCAAAATGTACGAGCTTATGAACTTGTCTACTGGCGAAATTATTAGGACGGGTGAAAATTTAGAGGAGCTACTTCAAGACTTGCCAGAAGGGTTTTATGAGATAAAAGAACATGGAGAATTTGTGAGGTTTTATAGTACAACTAAACCCGAGCACCAGTGCTGGATTTGAGACTTTTTTTAATTTTTGAAAAATAACAAAGACATAAAACTAAAGAACCTTTCTTAGAATTTCCCTCAGATCCTTTAGAAACTCCTCAAGGTGCTCTCTCTTTACGTGGGGCATCATAACGATTCTTATG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAAAAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 4 861075-860433 **** Predicted by CRISPRDetect 2.4 *** >NC_022084.1 Thermococcus litoralis DSM 5473, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 861074 30 100.0 34 .............................. AGGGAGTTCTTGAAGAGAGTAAGCGAGGCTCCCG 861010 30 100.0 37 .............................. CCGACTATGGCTGTAGAATAGTCACCTTCCTTAGCTG 860943 30 100.0 37 .............................. AGTGTTCCGGCGACTTGGTCAGCGAGTTGTTCTGGGC 860876 30 100.0 38 .............................. CTCAGCAACATGTAGAGTACTCCAACGCCTATTAGAAC 860808 30 100.0 37 .............................. AGCACAGACTGGCATTATGTTCTTAAGGCGTCAGGAT 860741 30 100.0 40 .............................. GGAGTTGGAACAATAGCCGGTGCGGTTATCGGTGGAGTAA 860671 30 100.0 45 .............................. CTTAAGAACCGCAAAACGACCATTTACCTCTTGGACAGTCGCCGG 860596 30 100.0 37 .............................. TCTTGAACTTCAAAAGCAAACTTCTTAACATCGTCTA 860529 30 100.0 37 .............................. GGAGGATCACGGTATAAGGATACCTGGAAACCTTCCA 860462 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================= ================== 10 30 100.0 38 GTTCCAATAAGACTTTAAAAGAATTGAAAG # Left flank : TCAGAAGTCGTGATCTTCACAGCAACCGGATACAGTAAACCCGGCAGGATTCTCGTTATTGCCTGAACTTCTATCCTGTCCTTTTTTTATTTGTGATAATGGTTGAGTCTGCTTGAGTGCTGGCGTAGGGTAATTTCTGGAGTTTTTTCAGGAGGTGGTTTGTCAGTTCTTCGAGGTTCAGCTTTTTCTCCCAGTTGTGGAGGGTTGAGTAGTGAATGTTTGCTCCGAAGAATTTTCTGCCGTAGTGCTGGGCGTCTCTGAGGGGTAGGTTGTAGTATTGTTTAAAGAGGAGTATTGCCAGTATTGTTTTTACTGGAAATTTTTTGGATTTTGGTAGGTTCTTCAGCTTTCCTTCTGATTCGAAGTCTGCTAAAACGTCGAGGATTATGAATGCCACGCTTTCAGGGTCTTTGAGTCTGTGATCCCATCTGGGGATCACGACAACCACCTGAAAGAATTCAGCAAAAACCCTAATAAAGGTTACTATAAACACGCCCATT # Right flank : AGCCTTAGTTGGAGTAGCAAAGCTAAGTTAAGATCTCGTCAAGTCTATCTTCTTCAATTGCCTGCCTTATCTCTCTGGCAATTCTCCTTCCAGTGCTCATTGGCTCGTTGTATCTGAGCCATGTGTAAGGGGAGCCGTTTATGAAGGGATTCGTCCCGGCAACGATTCTCGCTGAGATTTCAAACACCACGAATTCCATGTCCTCTGTGATGACTCCCTCAAGGCAGAAAGGCCCCCAAAGTCCTCCCATAAGTTTTTCCGCAGCTTTTACTGCTCTTTCTCCAGCCTCGATTATATCCATGAGCAGGCTTTCTCTGAGCACTATTGGTATGTTTCCCACAACTGTGTAGCTCGTCTCCACCCCAATTTCAAACTGTTGCTCTGCACTTATCCTTCCTATTGCATCTGCATTGCTTTCGTATCTCTTATCTATGCTCATAAGCTCAAGCTCTTTGTTGAGCTTCGAGTAGAAGAAGTGTGGGTAAACGGGAACACCTATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 5 865174-861993 **** Predicted by CRISPRDetect 2.4 *** >NC_022084.1 Thermococcus litoralis DSM 5473, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 865173 30 100.0 36 .............................. AAATAAAATGAAAAACTGATTTTAAATCATCGAAGA 865107 30 100.0 43 .............................. ACGCTTTAGGGGAAAATCAACAAAGTGGGCGCCTTCGGCGCCC 865034 30 100.0 38 .............................. CAAATAAATCTAGTGCGACCTAAGTAGAGCTTCCCAAT 864966 30 100.0 37 .............................. AACAAACAGCAAGCACTACATCAACAAAGTCTTCAAC 864899 30 100.0 37 .............................. CTGCTTCATGAAATGTTAGTATGAACCCAAGTGTTAT 864832 30 100.0 38 .............................. TAATATCGTCGACGGCCTAGCTAAAGCCATAAACACCG 864764 30 100.0 45 .............................. TCGCTAGAAAATGGTACGGCTTATTTTGTAGTATTCGCTTCGTTA 864689 30 100.0 39 .............................. CTATTAAGGCCTTCGAAAAGGTGTTAAACCGTGCAGAAA 864620 30 100.0 34 .............................. CGGTCTAAAGGGACGCGTTCACCGTCTAAGTCCG 864556 30 100.0 39 .............................. TTTATCACCATCTCCTTTAATTAAATAATTGGGGGTAGT 864487 30 100.0 42 .............................. CGCCCCGGATGACCCTAACCGTCTCTATATACCGGCTTTCAA 864415 30 100.0 39 .............................. CTATTGTAACCCTATCCGCGCCGTAGACTTTAATAAATG 864346 30 100.0 39 .............................. TAGAATTTTCGAACACGAATTAAAAGCCCAAGGAATCGT 864277 30 100.0 38 .............................. TATTCTTTTCTTTCTTCGGCTATTTCTCTAGGTGGTAA 864209 30 100.0 37 .............................. CCAGAACGGCCGATAAGCCCGAAAACCTTCAAGGTTT 864142 30 100.0 38 .............................. TTCGCTAGCTTTTCGCTCATTCGTACCCGCCCCCGTAT 864074 30 100.0 38 .............................. TCTTTTCTAGTGCTTTAGCCCATGCGTTAAGCTCGGAC 864006 30 100.0 39 .............................. GCTATACTTTAAGCTAAGGGACATAATGAACCCCGAAAC 863937 30 100.0 39 .............................. ATAAAACCCGGTTATTTGAGAATAACCAGCTGGTAGTGA 863868 30 100.0 38 .............................. TTTATATAAATATCGTAGTTATTTCCGTTTTTCTTGAA 863800 30 100.0 38 .............................. TTTCTAAAACCCCCCCAGACAAAACGCTTAATTTAGAG 863732 30 100.0 40 .............................. TTCATTTACCTTTTGGTGGTCGCGGATTTTTAGGAATTCC 863662 30 100.0 38 .............................. ACAGTTTCCGTTTTTGGTTTAGCCGTATGGGCTATTTC 863594 30 100.0 38 .............................. ATCAGTAGAACCATCAAGAGTTTACGTAGTGGTTAGCG 863526 30 100.0 37 .............................. TTGCATAGCGCACTTTCAACTTCTTGATCACTTCGAG 863459 30 100.0 38 .............................. TACAACGAGACCATCACCTTGAACGTGAGCGCAACTAA 863391 30 100.0 38 .............................. TCGGTTATATTAAAAGCTGTGCTAAAGTGTCTTTCGTA 863323 30 100.0 37 .............................. GAGCTTGAACTCATCGATAATTGTTGCTGAACTCTGG 863256 30 100.0 37 .............................. GATTTTATAGGAATACGCCCGTATTTGACGATAAAGG 863189 30 100.0 41 .............................. GAAGCAATAGCTCCAACTTGGTATCCCTCATATTCGACTAT 863118 30 100.0 36 .............................. TAAACTCGGCGAACACCCTATCCGTATCTCCCCTAA 863052 30 100.0 39 .............................. TAAATACAAGCAGTACAGAAACAAACAGCATTAATGTAC 862983 30 100.0 38 .............................. CAAGTAGATTTCGTACTGGTAACTGTCCCTTAGCGGGA 862915 30 100.0 39 .............................. AAAGTTTTTGATTTTGTTGAAACTCAGGATGGCTGGAAG 862846 30 100.0 37 .............................. AATATCAAAGTTTGTCCCTGCTATGTTTAACCTCCCA 862779 30 100.0 38 .............................. GGGCTGGGACTACACTTATTGTTGCAGAAAAACTCGGA 862711 30 100.0 37 .............................. GTAGTCGAAAGTGTACGATATCGGGACGAAACCACCT 862644 30 100.0 40 .............................. AATATTGCCCGTCTGCACGTGCGAATGTCGCTTTCAGCGT 862574 30 100.0 37 .............................. AAAATTGAATAGGTAAATAATTGTTTAAGACTTTTGA 862507 30 100.0 38 .............................. CTCTTTGACTCCGTTACTCCGGGTGGTACATTAATGCT 862439 30 100.0 39 .............................. ATCTGGGAGTTTGTCACTGACAAGATAAGCCCAGAACAA 862370 30 100.0 38 .............................. TCAATTTCATGCTCAAAAGATGATATAACAATTGAAGC 862302 30 100.0 37 .............................. TTGTTTGTATTTTACAACTCCAGACTTTACCCATGCT 862235 30 100.0 39 .............................. ACCATTATATCTACTGTTCCCGTGTCCCTAAACTTTGTC 862166 30 100.0 38 .............................. ATGAAGGGTAAGACACTACATCTTAATAACGCTTTCGC 862098 30 100.0 46 .............................. TTATCCAAGGGAACGGGAGCGCAAACATAAGGATGTATTACGGCAA 862022 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 47 30 100.0 39 GTTCCAATAAGACTTTAAAAGAATTGAAAG # Left flank : TGAGGTTAAGGGGTGAAGCGAGGTGTTCTCGGCTCTCGTTGTGGGTCTTGATTTTCCAATTTTTCCCATTCTAGTGGTCTTATTTTCAAATCAAACCCCTTGCAGCAGTCTGGAAGTCTTTAGTAACTGGAAGTTACTATCAAACAGGAGGTTATGATATTTTGAGGTTTTTGTAACGAAATTTTTTCGGAATTTTGAGCGGAGGCTTATTAGAAATCCTTTGATATCCTCTCCTCGTGGAAATTTAACCTTTTTGGATTTAAGGATGTTTTAAGGCTTTATTTTTGATTTTACCTTTTGTTTTGTCTCTGGAAGTCTCGTGAACATTTTTGTGCATGAAAGAAAAGTAGTAAATTCGGGCAAGTGAGTGCTTTGAAGTCTTTTCTAGTGGCTTGGATTCGAGCCTTCTTATGGCTGTTTTATTGACCCTTTGTGGAAAGGCTTATAAATTTCAAGCTCTCTAATTACTTTATAGGGAGTTTAGAGGAAAATTCGTCCCT # Right flank : ATTATTATGGTGGGCAAATTGTCAAAACTCTTGAAATTGTTCCAAGGGCGTGTTTAGTTTCACCCCCTGTTATTTAAACAGTATTTGACTCTGAGGAGGATTTTCAGACCATAACACATTACCCCAAGCAAAATTCGGGTTACAGTAGTCTTTTTCAGAAAACAGGGGGATTCTACTGCCAAACCAAGTTGTAAACGCACCCCAGAACCCCTCATGAGGATTCCTATACCTGTACTCTTCTTCAGAAAACACTCTATCTCTCTTCTTACTACCAAAACCACCTGGAGGGTTCTTAGTTTTCTTAACAATCGGCCGATAACCCTTTTCCACCACAGTGTTCAGAACTTTCTTTGAATCATAAGCCCCATCAGCATAAAAATTCCCAGAACCCTCCGGCAGGAGTTCAATCAGCTCGTTCTCAGAAGTCGTGATCTTCACAGCAACCGGATACAGTAAACCCGGCAGGATTCTCGTTATTGCCTGAACTTCTATCCTGTCCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 6 1226231-1230894 **** Predicted by CRISPRDetect 2.4 *** >NC_022084.1 Thermococcus litoralis DSM 5473, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 1226231 30 100.0 38 .............................. ACGGCGACGCAGTCTTTGAGTTCTTCGATGATTTTGAT 1226299 30 100.0 38 .............................. TTTATTAAAGCGAGACCATTACCGAGCACACGGCCGAC 1226367 30 100.0 37 .............................. ACGAGAGCAGCAGGAGAGATTTAAGGTAGGGTTAGGG 1226434 30 100.0 37 .............................. ATTACTGCAACTGCTACAAGTCCAATCCCCAGAGAAA 1226501 30 100.0 36 .............................. AAAATCCTCTCTTGTTCTTCTTTTGGCAATTTTAAG 1226567 30 100.0 37 .............................. GAATCACTTTTCACCCTTTCACCTTTCACCCTATCGG 1226634 30 100.0 41 .............................. TGATGAAGGAGAGTGGAGGTTCTTTGATGTTGACTATGTAA 1226705 30 100.0 39 .............................. TTACCAAAAGAGACAACAACTTTTACTACATTGAAATCC 1226774 30 100.0 38 .............................. TGTGAGTATCGACCAACTGCCCGTTCACGTAAGTACGG 1226842 30 100.0 37 .............................. ATCAGGGTCTGGCTGGATGCCAAAGTCTATTGTAAGT 1226909 30 100.0 38 .............................. CTCAATGGTTCTTACATTCCTTACATGACCTTACATAT 1226977 30 100.0 40 .............................. TTATTTGTGAGGGTAACGGTAAAGGTTACTTGCGTGTTTG 1227047 30 100.0 37 .............................. TATTCCTCTTTTGTATCTCCTTTCTCCGTTTTCTGCC 1227114 30 100.0 39 .............................. TATCATCAAGATCAATCCTTAACACTCTCTCATAGTCCA 1227183 30 100.0 38 .............................. GTAGTCAAGGACGCACTAGCAAACAGCACTCTTGACAC 1227251 30 100.0 38 .............................. GCTCTACTCTCTTCGTTACTCGTCCCCGATCTAATGCA 1227319 30 100.0 38 .............................. GCTCTGAGCTGTCTTCTAATAACTCCCTTAGCACATTA 1227387 30 100.0 37 .............................. GTATTCAAGATAAACAACATCTCCAGCACTTGGATTA 1227454 30 100.0 38 .............................. TAAATATGATTTATGTTTTATTTTTATCATGGTGGCGT 1227522 30 100.0 37 .............................. CTTTGCAGTAAAACAGTTTTTCGATGAATACGGTCAT 1227589 30 100.0 40 .............................. TTAAGACCGAACTCGACGAACTGAAAGTTTCCCCGAAACA 1227659 30 100.0 38 .............................. ACTCTACAGCGCGAGAAGGGCTTCTACTACTACACGAC 1227727 30 100.0 34 .............................. TGAGGACAATGGAGAGCGTCATAGCAGTAGCCAA 1227791 30 100.0 39 .............................. CCACCATGAGTAAGAGAAGGGAGAGAATGATAATAAGAA 1227860 30 100.0 37 .............................. AAGGGAGAGTGGCGATTCCTAAAGAAACAAGGATGCT 1227927 30 100.0 38 .............................. CCTGGTGGGAGTTAGATGTCCTGCACAGGAGAACCGAC 1227995 30 100.0 38 .............................. CCCGTGTCGTAAATCCACACCTGGAACTGGTTCAAGTC 1228063 30 100.0 37 .............................. GTGTATCTCCGTTTTTCAGGATATTCGTCTGAGTACC 1228130 30 100.0 38 .............................. GTGCTGTCCATGAAAGTCACTGAAATATTGCCCAGCTG 1228198 30 100.0 38 .............................. CAGGATGGTAGATATAGACTTAATCGTGCTAGGGCTCG 1228266 30 100.0 37 .............................. AACCTTACCACCATTCAGGTCCACCAGCCCTTTGTTC 1228333 30 100.0 39 .............................. TTCACACCACCCCCATCAATCCACCAACCCGGCTCTCCA 1228402 30 100.0 38 .............................. TAACTACGCTTATGTTGTAGTTCGGTAGGTAAACACCC 1228470 30 100.0 40 .............................. GCAAAAAGTTTTTTGCGAGAGTTTTTTCAAGCTTTTTAGA 1228540 30 100.0 37 .............................. CTGCATTTTTGAGCGCTATTCCATCTTTGCCAACAGT 1228607 30 100.0 37 .............................. AGTAGACATGGATAAACCTGTCAAGGAAGTGATTGCG 1228674 30 100.0 38 .............................. TCGAATACAGGGTTAGCTCCTAATGGGTCTTGGAACAC 1228742 30 100.0 38 .............................. AAAAATAAAAGCGGGACTTTCTCGAAATTGATTTTTAA 1228810 30 100.0 36 .............................. CACTTCGAAGGCATTAAGCACCTTCGCGGGCATTTT 1228876 30 100.0 37 .............................. CCGTAACGTCCCTGTTGAGCGGATTGTATATAGTAAG 1228943 30 100.0 37 .............................. TATCCTCGTCCATGTTCTCAAGGTTTGCAACAATGCT 1229010 30 100.0 37 .............................. AACGGGAAGAAATATCTCTATGATGACTATCTTGACG 1229077 30 100.0 41 .............................. CCGCCGATAAGGAATAATATAACTGCTAAGGCCAAGTATGG 1229148 30 100.0 37 .............................. CTTAGATATTTCTTATTGTTCAAGCCTATTGCGTGTG 1229215 30 100.0 37 .............................. AAGATTATGCTCAGTAGCCAGCTCACAAAGGTCCAAG 1229282 22 70.0 0 .................G....-------- - Deletion [1229296] 1229304 30 100.0 35 .............................. TGATAGGAACATTTTTGTTCCAATTCTGGAACAAA 1229369 30 100.0 44 .............................. CTTAGTGCTGCAGTAACTACTGCACCCGTGAACCCTGCATAACC 1229443 30 100.0 36 .............................. CACTTCGCAGTTATAGAGACATACGCATATGATGAG 1229509 30 100.0 37 .............................. GCCGTTTTAAGTGCACTGAGCCTTTTAGGTATGCCCT 1229576 30 100.0 39 .............................. ACGCATTGTCTTCCTGTCGTAGACCACGGCTTCATAATC 1229645 30 100.0 40 .............................. AGAATGAATAAATCATATTCTCGTTCATCAAGTCCTTAGT 1229715 30 100.0 39 .............................. TTGATGCCTTGCTAAAGTCCTCACTGCTCATATAGTCAA 1229784 30 100.0 37 .............................. AACTTTATGTTTGCTTCCTTAACAATGCCGTTTATTA 1229851 30 100.0 36 .............................. ATGCCTTATCAAAAACTTCCTTTCTTCATCATTTAA 1229917 30 100.0 37 .............................. TTAGCCAAATTGGGCATCAAGGCAGTTGACTATTACA 1229984 30 100.0 39 .............................. ATTCTCAAGATTGTCTTCTCTGAAAAAGAAGCGGAGGTC 1230053 30 100.0 41 .............................. CATATTTAGTGTTATCCCGCTGAGGTACCTCGGGGATGAGA 1230124 30 100.0 36 .............................. CAGGCTTTACACACTTTCGGTGGTGCTCCGACCTTG 1230190 30 100.0 38 .............................. TAAGTTAATCTTTCATCTCTACTATGAGTTCTCCTCGA 1230258 30 100.0 37 .............................. TACCTTAGCCGTCTTATTCACTGCGTCCCAAGTCTCC 1230325 30 100.0 36 .............................. CTTTTTACAACATACTCAATTGCCGTCCCATTTGCA 1230391 30 100.0 36 .............................. CATTATAAGCCTCTATAGCTGCATTAGCATATGTAG 1230457 30 100.0 44 .............................. AGAACTTCTCCATAGCCCTTGCTGAAATCTTGACGTGCTCCCAC 1230531 30 100.0 37 .............................. AGGTAATACTTACCAGAGGAATCTGGAGACACTACTT 1230598 30 100.0 38 .............................. AGAGAAACCATTTTTCTCAGAACTCTAAAATACCTCGC 1230666 30 100.0 34 .............................. GCTCTTAACTCGAACTCTGAAGCAAAATCTGTAT 1230730 30 100.0 38 .............................. TATGTAGCCTTCAATTAATGAAAACGTATATTCGATGT 1230798 30 100.0 37 .............................. CTGATGGATTTGCTTGGGCTCGACGACAGGCTCATCG 1230865 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================ ================== 70 30 99.6 37 GTTCCAATAAGACTTTAAAAGAATTGAAAG # Left flank : TACAAGTCAGAATAATTGCAAAATAGCACGTTATCATGTTTAAATTTTCTCTTTTTGGATTTTCTGCCCTCTGAAGGATTAATTTTGAGTTCAAGGCTCTAAGAATGCTCTGGAAGTCTTTAGTAACTGAAGGTTACTATTAAACAAAAGGTTACAAAAATTTTAAAAGTTTATAACGAAATTTTTTCGAAATTCTAAACAAAGACTTTTTAGGACTTCTTTGGTATCCTCTCCTCATGGAAATTTAACCATTTTTAGTTTAAGGCGTTTTTGTGAGCTTATTTTTGATTTAAGCTCCTATTTCGCCTCTGGAAGTCTCATGAACATTCTTGAGCATTGACAAAAAGGAGGAGTTTCAAGTGTGGTTGAGTTTCAAGGTTTCTCTCAAGGGCTCGAATTCGAGCTTTCTGAGGGGAGTTTTATTGACCCTTTGAAGAAAAGTTTATAAGATTCGGGCCTTCTAATTACTCTTTGAGGAGTTTAGAGGAAAAATCGCCCCT # Right flank : GTTCTTTCTTTTCGAGCTTGAGCTTCTTGAGGCAACTCATAAGCCTGAACAACCTACTTGGCTCCAATAAATCCTTATCTCTCTTTAATGAACAACACTTTTAAATGCTCATCAAGTACTCCTTTTGATGATAGCGTTAGGGATTGAGGGAACAGCACATACACTCGGCATAGGGATTGTGACGGAAGATAAAGTTCTCGCCAACGTATTTGACACTCTCACAACCGAAAAAGGTGGCATACACCCAAAGGAAGCCGCTGAACACCACGCGAGGCTCTTAAAACCCCTTTTGAAAAAAGCCCTTAAAGAGGCCAAAATTAGCATAGAAGATCTGGATGTAATTGCTTTCTCCCAAGGGCCTGGATTGGGGCCGGCTTTGAGAGTTGTGGCAACTGCCGCAAGGGCTTTAGCTATAAGATACAACAAACCCATTGTTGGAGTTAATCACTGCATCGCCCACGTGGAAATTACAAAGATGTTCGGAGTAAAAGATCCGGTTG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 7 2215163-2214800 **** Predicted by CRISPRDetect 2.4 *** >NC_022084.1 Thermococcus litoralis DSM 5473, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2215162 30 96.7 37 .................G............ AGCATCACAGGCCTAAACTTCAACATATTCTGAGGTG 2215095 30 96.7 37 .................G............ TAATTTATTGTACAGTAAACGAATTAATTATATATAT 2215028 30 100.0 38 .............................. ACATACCAGAAGAAGATTGACTGGGAAGACACTCCTAT 2214960 30 100.0 36 .............................. GATCATCCAATTCTTGTCGCGCGTAGGATGAAACAG 2214894 30 100.0 35 .............................. ATGGAGAGTAGGGCACTACATCTTAATAACGCTTT 2214829 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 98.9 37 GTTCCAATAAGACTTTAAAAGAATTGAAAG # Left flank : TCTTTTCGG # Right flank : CTTGAACCTCAGCATTTGAAAACGCTGGGTTTTTAAACTCTAACTCTTCTACTCTACCATATATCAAAGGAGGGTGAGAGAATGGACAAGGTCTATCTCACATGGTGGCAGGTGGATAGGGCAATCTTCTCACTTGCTGATAGTTTAAAGAGAATACAAGCCTGATGTCATTGTTGGAATCTCGAGAGGAGGACTTATTCCGGGAGTACGGCTCAGTCATATTTTAGGAGATGTGGAGTTCAAGGTAATCGACGTAAAGTTCTACAAGGGCATTGACGAGAGGGGAGAAAAACCCACGATAACAATCCCGCTCCACGGGGACTTAAAAGGAAAGAAAGTCGTAATAGTGGATGATGTCAGCGATACAGGAAAGACGCTCCAAGTTGTTATCGAGGAAGTAAAGAAGAAAGGTGCAAAAGACATCAAGGTGGCATGCTTGGCAATGAAGCCGTGGACTTCAGTTGTGCCTGATTTTTACGTTTTCAGGACTGATAAGTGGA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAAAAGAATTGAAAG # Alternate repeat : GTTCCAATAAGACTTTAGAAGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], //