Array 1 17-2262 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATYM01000004.1 Haloplanus natans DSM 17983 HALNADRAFT_scaffold3.3_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 17 30 100.0 35 .............................. CGTTGCATTGCTACCTCCAAGCCCGCCGCCGGAGT 82 30 100.0 34 .............................. GGTTTAATAATCGTGCCGTCGGCTGCCACAACTT 146 30 100.0 35 .............................. TACTACACCCTCTCGCGACGACGACCGCGGTAGCC 211 30 100.0 37 .............................. GCCCTCGGCACTGCTACCGCTCGCCGCCGGGGTCATG 278 30 100.0 34 .............................. GTCGCCATCGTCGCCACACTCCCCCTACTCCGGC 342 30 100.0 36 .............................. CGACCGCCGACCGACCACGACCGGGAGATACGCGAC 408 30 100.0 36 .............................. CTCTGACCTTGACAAGTTGATTGTCTCTTGCCCAGC 474 30 100.0 34 .............................. GGCGTGTCGTGGTCGGACCCCGACGAATGGCGGA 538 30 100.0 34 .............................. AGTCATCGTCTCACGGGGATAACGTTTGTCTCTC 602 30 100.0 36 .............................. GTGGCTATGACTACCTGCATGACATTATTTACGGGA 668 30 100.0 35 .............................. TCCCGGAATAATCGCAGTACGGCGGCGGGTTCGAA 733 30 100.0 36 .............................. CAAACCCGAAGGTTGAATGTTGAGACTTGGGAAATA 799 30 100.0 35 .............................. TCAGCCTGGGAGGTCTCGATCATGACGTCGTCCCG 864 30 100.0 35 .............................. CCCGTGTTGTTTTGGGCCGCCAGATACCCGCTGGC 929 30 100.0 35 .............................. GTAGGTGGCCATCGGTATGGAAACGTTCTGCAGTC 994 30 100.0 35 .............................. CCGGAGAAGGTCGCGTTCGAGACGCCCGACGGGCG 1059 30 100.0 36 .............................. GGTTTGTACGCGAGCCGTTCAATCAGGTGGAGCGCG 1125 30 100.0 34 .............................. GTCACACTTGCTAAGGGGATTGTCCCGCCCCGCG 1189 30 100.0 37 .............................. GAGGCCTCGGTCGAGGAGCAGATCCGCCGCGACGCAC 1256 30 100.0 34 .............................. CTCGCAGGAGATGCCGATGAGGCGGCTCGCGCCG 1320 30 100.0 35 .............................. TTCGACGCGACAAACAGGCGTCTTTAGCCCGTGCC 1385 30 100.0 36 .............................. TTCACCCGCGTCGCGGACGCCGTTGGCCGCCGCGCC 1451 30 100.0 35 .............................. GACATCGCACTCGTCGTTCGGGCAGACGTACGTGT 1516 30 100.0 35 .............................. CACCCCACCGCCGGGGTATATCGACGATTTACAGG 1581 30 100.0 37 .............................. CTGCCGACCCTGTGGGTCGACGTATTCTTGAGCCCGC 1648 30 100.0 33 .............................. GCCGCCTCGGACGTGCGGACGTACAAGTCGGCC 1711 30 100.0 33 .............................. AACGGGACGCTGACGGGGTCGGAGCAAAGCGCG 1774 30 100.0 37 .............................. GGTCTGTGGTTCGAATCCGCTCCCGTCGTTGGGAACG 1841 30 100.0 35 .............................. CTATGTAAGAGGCATGAATCTCACCATGCGCCCGT 1906 30 100.0 33 .............................. CATCATTACCAGTAGGTGCGTCACCTATTACTA 1969 30 100.0 36 .............................. GACGAGCGCGCCCTGCAGTTCCGGCAGCTCGCCCCG 2035 30 100.0 37 .............................. GTCGTGGGTGCGCGACAGTGAACGTGTCATAGTATCA 2102 30 100.0 37 .............................. ATACCATGTTAGCTGATTGTGACCATCCCGAAGCGAG 2169 30 100.0 34 .............................. CGATGACTGACCCGCGAATGAATAGCACCCGGCC 2233 30 90.0 0 .........................TC.T. | ========== ====== ====== ====== ============================== ===================================== ================== 35 30 99.7 35 GTTTCAGACGTACCCTCGTGGGGTTGAAGC # Left flank : CGGTCCGCGACCGCCTG # Right flank : CGAAGGTAGTCTGAGCCATATGTGCGTCTCTGTGATGGCTGAGCTATGAACCTGGCTGTTCGGAGGAGAACGATCCGGCTGATCCAGTACACTCTGTCCCTAATGCCGACTTATTGGAGAAGTCGTCACTGGAACACTGCTATTCTCCGCTCAAGCGGCCTAATCAGGGGGTGACACACCACCGTTTCTGATGCTCGACAGATATTTAGTGTAAGCTTGTTTTAGAAGATACTATGCGACTGGAAGCGACCGCAAAGCAGGACGAATACAAGGTCTGGATGACCGACGCCGAACTCGAAGAGCTGCGGCGGGCCGCTGCGAACCATCGCGACGATCTCATCATCCAACTCGGTGGCTACGTCGGCCTCCGAGCCTTCGAAATTCCGCAGATCCGTCCGGAGCACGTGAAACGCACGCCGGACGGCGATCACTACCGGCTCCGGGTTCCAGAGGGGAAGGACACGACCGGGAACGGCGGGAAGCCCCGTGATGCCTACCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGTACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 31097-34076 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATYM01000004.1 Haloplanus natans DSM 17983 HALNADRAFT_scaffold3.3_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 31097 30 100.0 38 .............................. GTCCCGTCGACGGTCGCGTCGATTGGGCGCTGGAAGTT 31165 30 100.0 35 .............................. CCTCGGACAGGGCGCGGTCGACGGGGTCGGCGCCG 31230 30 100.0 36 .............................. GGCGACCGTCACGTTGCCCTGTCCGTCGAGCGATAC 31296 30 100.0 35 .............................. GACCCCTCGACCATCCAGTCCGTGTAGTCGTCGTA 31361 30 100.0 37 .............................. GACAAACGCATGAACGTGCTGCACCGGACCGAGACGA 31428 30 100.0 32 .............................. GCGTGGTGGCGGTGACGGGCGGTTGGATCGGC 31490 30 100.0 36 .............................. GCCGACCAGGTCGGTGACGAGCCAACGCCGAGCGAG 31556 30 100.0 35 .............................. GTGACGAGCGGGCCGCCATCCGCCGCGATACTGGA 31621 30 100.0 36 .............................. GCGGTGTATGCCCGAGCTCCCGGACCAAGTCTGGAA 31687 30 100.0 35 .............................. TCCCCGTTGAGGACACCTGCCGACTCCAAGCCGTG 31752 30 100.0 35 .............................. ACGTCTACCCGATCTACGACTGGGCCGTCGAAGAC 31817 30 100.0 37 .............................. CACCCAACGGTCTTGCGGTTGTCCGCGGAGTAGACGA 31884 30 100.0 35 .............................. CACCCCCGCCCGGTGTGCTGGCGCCCGGGCGTCGC 31949 30 100.0 35 .............................. AGGCGACGAATACACAGTCCGCATCTGTTGCCCAC 32014 30 100.0 36 .............................. CCCGTCGAACTCACATGGGCGGAATGGAACCGGCTC 32080 30 100.0 36 .............................. CCGTCGTTGAGAGTTGCGTCGATCTTCTGAGTGCCG 32146 30 100.0 36 .............................. TGTCCGTACTGTGGCGACGCCGTCGACGACGATCAG 32212 30 100.0 35 .............................. CATCCACCTGATGACCGTGGACTTAGCACAACCGA 32277 30 100.0 35 .............................. CTCCAAAGCATCATCGTCTCGCTGCATCACACGGC 32342 30 100.0 33 .............................. CAGTCCGACGTAGTGAACGCCGAGGCTGGCGCG 32405 30 100.0 35 .............................. CACCAGTCGTCGACGCGGCCGTCAAGCGTGAGTGT 32470 30 100.0 37 .............................. GGCTGGTCGAAGGGCAACTGGGCGTCGCTGACGGGGC 32537 30 100.0 37 .............................. GACGCCGACGCCCACGACGATCTCGACGTCGGCGTGC 32604 30 100.0 37 .............................. AACCGGGCTGCCGACGCCCTCGAATCCGCAGACGGCG 32671 30 100.0 37 .............................. TCACTGGTGGCAGTCGGTATCACGTCGTCTGTTCGGA 32738 30 100.0 33 .............................. GGTGAGTGTGCCCGTGATGCTCAGGTCGCCCGT 32801 30 100.0 36 .............................. GGTCGCGCGGGCGTCGATACCCTCGGTGCGGGAGGT 32867 30 100.0 37 .............................. GTTCAGAGGGGGTACGCGTGGACGCCCGGGCGCCCGC 32934 30 100.0 36 .............................. CAATCGTGGACGATAGTTTTCTCGGCGACGCGCTGC 33000 30 100.0 35 .............................. GAGCAGTGGGCCTCCGACATCGAGACCGAGTCGTC 33065 30 100.0 36 .............................. CGCAAGGGGATGGTCGCCGCCGTCGCCTTCGACGGC 33131 30 100.0 34 .............................. GCTACTCCAACAACGGACCGTCTATCTGCTCCCC 33195 30 100.0 36 .............................. CACCCACGGCCGGTGTGCTGGCGCCCGGGCGTCGCG 33261 30 100.0 36 .............................. TGCCGGTGGCTCCCGCGGCGGCTGTGGTGTTCGGTC 33327 30 100.0 37 .............................. GGCGTCACGCTCGCGAAGCCCTACAGTACCTCGAAGC 33394 30 100.0 36 .............................. GAGGAGAGCGTCGACGGCCTCCGACTCACCGCGCTC 33460 30 100.0 35 .............................. GCCTCCGACGGGAGCGAGGAGAAGACAACCGTCGA 33525 30 100.0 33 .............................. CTCGCCACGGTGGCCGTGTCGAAGTACGCGGAT 33588 30 100.0 37 .............................. GGCAGGTCTAGGATGTCGTCTGGGTCTGCCATGTTGG 33655 30 100.0 35 .............................. GTCGATCCGAGTCACAGCCACCCCACCTTGTCGAC 33720 30 100.0 34 .............................. CTTGAGTGGTGTGACGACAACAATATGACCCACA 33784 30 100.0 35 .............................. AAGAAGTGTCGGCGGTGTGGGCTCCCCCGGGCGAC 33849 30 100.0 34 .............................. ACCTCGCCGACGCTAACAGTCGGGCGAACGTCGT 33913 30 100.0 39 .............................. GTGCCTCGCCCCACGGGACCCCGTCGCCGTGGTCGGGTG 33982 30 100.0 35 .............................. GCCTCCCGGTTGGTGTACGTCTCGCCGCCGAAGCG 34047 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 46 30 100.0 36 GTTTCAGACGTACCCTCGTGGGGTTGAAGC # Left flank : ACACTCGAGCGAACAGTCGAGCACCCGACGCTGAACCGGAAGGTGAGCTATCAGTATCTGCTTCGCTTGGAGGTATACAAGCTCAAAAAGCACTTGTTAACCGGCGAATCCTATGATTCGTTCAAGCGGTGGTGGTAGATGTACGTCATCGTCGTCTACGACATGGAGGCTGACAGGACCCACCTGATGCTGAAGCTCTGTCGCCGATATCTTGTTCACGTCCAGAACTCGGTACTGGAAGGGGAAATCTCGGAGGGAGATCTAGCGACACTGAAGGGGGAGATTGAAGATCTCCTTCAGGAGGGAGAATCAGTCATGGTCTACGAACTCTCTTCGGACCGGCTATTGAACCGTACCGTGTACGGGGACGACCCGACCGAAAATAGTCGGTTCCTCTAGCTGATGTCGACCCCCCGGGGGGTTTGGGGGGATTGCGGGTCGACGGAAATGATGAAGTGTATACCACTGGTAGAGGTGATATGGTGGGCAAAACCACTATG # Right flank : TATAGGCTGTCGGCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGTACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 571072-572541 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386573.1 Haloplanus natans DSM 17983 HALNADRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 571072 30 100.0 36 .............................. ATCTCAGCGTTACAGATGGCGTAGGCTCGCGACTCG 571138 30 100.0 36 .............................. ACCTAGCCTAATCAGTCTAATGCAATATGCACGTTC 571204 30 100.0 36 .............................. TCGGTTCGAGATCGTGACGACAGCGCCCACGCGTGC 571270 30 100.0 36 .............................. GACGAGTCCTGCGACGGCAAGGCGATCCCCGACAGC 571336 30 100.0 35 .............................. TTTGGCGACAACACGACGGTGAGGCGGTCCGATGA 571401 30 100.0 34 .............................. TTCTAACCAATCATCTACGTCGGCTTCCCGCCAA 571465 30 100.0 35 .............................. GAGGTAAAGTCGACGGTGAAGGCGTACGAGGGAGA 571530 30 100.0 37 .............................. GTCGAGGAGGTCGTCCGCTTCCTGCGGCAGTGGCACG 571597 30 100.0 33 .............................. ATCACGACATTGGCTGTGTAGACCGACGCGTCG 571660 30 100.0 37 .............................. GCGACGGGCGCCACTATCGGATTCGCGTCCCGGAGGG 571727 30 100.0 35 .............................. CGACCGCGAGTGGTGGGGGCAACTCCCGCGCTGGT 571792 30 100.0 36 .............................. CGGTCACGTCGACCCTCCTCCGAGCGTCGACTGATT 571858 30 100.0 36 .............................. CGCACGAAGTCGGGCGCGCCGATCTCCTCCCAGAGC 571924 30 100.0 36 .............................. CGTCTTCGACTGGTGCTCGCGTAGGTTGAACTCCTC 571990 30 100.0 35 .............................. AATCAGTTCGACGACGCGGTCCGCGTCGCCTTCGA 572055 30 100.0 36 .............................. TCCGCGATGAGGATGTCCATGTCGTCGTACCCCTCG 572121 30 100.0 35 .............................. GGTGTCGAGTCGTTGGGAGCCGTATCGTAGCCGTT 572186 30 100.0 35 .............................. AGGACGCGATGAGCGATGGGGAACTCCCGTTTGAC 572251 30 100.0 36 .............................. ACCCGGTTGTCGAGGTTTTCGAGGAACGCTCGAATC 572317 30 100.0 35 .............................. GTCGGCACGAATCCCGAGTACGCGGATGTCCCAGC 572382 30 100.0 36 .............................. GGCCTCGGCGCGCTGGCGGAGGTAGTCCTCGATATC 572448 30 100.0 34 .............................. ACGCTCGTCGAGCCACTCCATCACCTTCGCGCGG 572512 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 23 30 100.0 36 GTTACAGACGGACCCTTGTGGGGTTGAAGC # Left flank : CCTGAGGCGCGCGTTCGGGGCTCTCGTACCACGATCCGCGAGCGGTCGCTGGAGGTGGTCGGGATGAACCGTGTCCTCGAGCTCAATCCACCGACTTGCTCTCTCTGCCCTCTCGAAAGGGAACAAATAATGACTGGTTGCCATGTGGCCCGAGCCGGTGAGGTGGTGACAGGAGAGCAAGACCTGGGTTAGACACCCTTCGGGGTCGACTGAGCTCCCCGTCCTTCCGTCGAGAATTGCGGCTCAATCAGCCTGGGATGTCGGCAGGTCGAACAAAATTTCACACCCCACTAAGCGAGCGCATACATTTGGGCATGGACGCATCACTCACGGCTCCAGCCGGACCTGAATGCGACTACATCGAAATATACGAATCCGATCGCCAGATCTGTGTGCCCTATCAGTCGACCCCCCCGGGGGTTCGGAGGTTACTGGAGGTCGACGGAAATTACTTGAGCCAGGCAGCAGATATTGGGTCTGTGTGCCCGAAATTGGGCATG # Right flank : CAGCGTCTCGCCGAAGCCGATCACGAGATCAAGTCCGGTTGCAGATGGACCCCGTCTCGATCCGGGTGGTCGACGCGGAAGACAAGTGCTTTCTTCGCCTGCCCCGAGGTTGGGTCATGCGCCTCCGCTCGTTGCTCGAACGGATTCCGTGGTGGGGGTACGGCGCCGTCGGCGTTCTGTATCTTTCCCTCCTTGCCGTTCGGCTGTTCGAGGGGTCGTTGCTCTCTACACCCGGACTGATCGTTCGGCTCTTGCTCGGCTGGTGGCTCGTCCTCGTGGGCTACCTGAAATACTACGGCTACGTCTGATCGAAAACGATTATGTACCCGTCCGTCGAGTCGGGAACCGATGCCCTCCAGTCGATTGCCCACCCTCCTCGTGAGCGTCGTCGCCGCGTGTTCGCTCGCCGGCGTCGCCGCCGCACAGCCGGAGATGGGGTCCGAATTCGGTCTCGCCGCGCGTACCGCCCTCCGATTCGTCGTCGTCCTCGCGATCAACCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGGACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //