Array 1 232113-230059 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFAK010000001.1 Flaviflexus huanghaiensis strain CICC 10486 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 232112 36 94.4 35 .GA................................. CAGTTTCGGGCCACGCCTGCGCCCAGGCTGTTTCG 232041 36 100.0 35 .................................... CAACGCGGCAGCACCATTCTGAGAGGAACCCATGG 231970 36 100.0 36 .................................... CGTCCCCCTGCCCCTCACGCCCGGACTATGGACCGC 231898 36 100.0 38 .................................... CTTCCGTGAGCGATAGAGGGCTCTCGGACGGCGTGGTC 231824 36 100.0 35 .................................... CACATGGGGCAGCGGGTCGCTGTGGAGGTGAAGGA 231753 36 100.0 37 .................................... CCGACCAGCATGGCATGGTCACGATCGATGGGAACAC 231680 36 100.0 35 .................................... TTGACCACGAGGATGTAATGTTCGTTGGTGCTCTC 231609 36 100.0 36 .................................... TGGCTGATAGGGCGTTCACGCATGACGGGGATGCTC 231537 36 100.0 36 .................................... TCCAGAGCCATTTTGTCAATCAACTCTTGTTGCGAC 231465 36 100.0 36 .................................... GACGAAACGGTGGTGGAGCTGTTTCCACGCCGCCAG 231393 36 100.0 34 .................................... TTCCTCAAGCGTGCTCATTGCTGTGTTCCTTTCA 231323 36 100.0 36 .................................... GGGGACGATGGATGGCCGGATTGAGAAGGCGAGGCA 231251 36 100.0 35 .................................... TTGTTGCGGCCGCCGCAGGACAAGCCCCAGTGCCT 231180 36 100.0 36 .................................... TCTGGGGCGATGGTGAGGGTGCGTCCGTCGCAGAGG 231108 36 100.0 36 .................................... GCCCGAGAAGCTAAGCGTCGCAGTTCCCGCCGCGTA 231036 36 100.0 36 .................................... CTCGGAGCACACGCTGTCGAACAAGAAGATCCAGTC 230964 36 100.0 34 .................................... ACACGCTCGCTCTAGGCATGATCAAGCACGCCCA 230894 36 100.0 34 .................................... ACCACTCCCCGTCTCCAACGTTGATCCACGTGTG 230824 36 100.0 37 .................................... CCGACACCCTAACAAACGTGGGTGGGCGGTCTGCTTG 230751 36 100.0 35 .................................... ACCTACTACCGCGTCATTTGCTTCGACGGGGACGA 230680 36 100.0 36 .................................... TTCTTCCGTGGTTTCGGCGTACAGGGCGACTACTCC 230608 36 100.0 44 .................................... TTGGAGCCGCCCGTCGCCGCGACAGTCTGCTGAATCGAATCCAG 230528 36 100.0 37 .................................... GGTGTCTAAGGGCCGGGATGTGGTCTCCGAGGTTCAT 230455 36 100.0 37 .................................... AGTCGGCGCTCGGTCAAGTGCTCGCCCTGTTTTTTAT 230382 36 100.0 34 .................................... CCCACCTGGTCGACGCTATGTAGGCGTCGGGGCT 230312 36 100.0 36 .................................... CGATATGGCACTGATCCAAGACCCTAAAGGCAACGT 230240 36 100.0 37 .................................... AGAGGGCCGCCGTCCACGAAGCCTTGAATGACGCTGA 230167 36 100.0 37 .................................... GGTGGAGCCGGTAGAAGCGGAGGAACGCCTCCTCCCG 230094 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 29 36 99.8 36 GCCTCAATGAAGTGCTCCCCGATGAAGGGGAGCCAT # Left flank : CGGTGACGGTGACCTCGGATGGTGGGTTCGGCACTGTCGTCGCCTGCGCGGCGGTCCCGCCGACGGCGAGTGCCATGGTCGTGAGAAGCGCTGCCGCTGACGCGAGCAGTCCTCTCGTGCTTCTGTTTTTCATGTTGTCCTCCCTTAAGGACTCCGACCGCCGGCCGGTCTGTCATGGGCAGCATCTGCCGCGGCCCACAGTTGTCTCTATTGCTGCATGGACCTCATGCGAAGCGGCATTGTTGACGATGCAGGTTCACTGCGCGTCACACGGAAGGCGGGTTCTCGCACGAGCCGACAGCCTGCTGGGTGCGCAAGCCTCAAAAAGCGCCGCCTTGAGTGCCCAGGTCGTGGGAGAGGCCGCGTGGACTGAGTAACCGTGCCATTGGATACGTCCTTGTATCAACAGAACTATTTCCGCGTTATCAATCCATCTTGAAGATAACCCATGCGATGAGAAAGCGCTAATAAGTGAAGAAGGTCTTTTGGACGATGGACTG # Right flank : AGTCCTCGAAAAACGAGTACTTTGACCTGCGGCGATACTAGCAACCGCGAGAGGTCATCCCACGTTGATCAAGATTTTATCGCTATGCGGTTTTCAAACAAGTGCTTTCTCGCGCGTTTCCGGAGAAAGGTGGCTCGCGAGGGGACACCGGGGTTTACGTGTCGATGCGCCGCTCGCTTAAATGACGAAGCTTTGAGGCTTCGGCAACTCAGCTTGTCTGCCAAGCGACGTTATTGACCGCTGGTTGGCGTCATGTGATGCTCCCAGGTCGCAGATAAGGAGGGCGTCCTCAGCGCTATCCATGAGGTCTTCCAGCTCATCGGTCAATGACACCAGAGCCACTGGATTGAGATCCAAGAGAAACACCGAAAACTGCATCCGTTCCCCGTAAGACCCGAGGGCCTTGGATATCCTGGCTCGACGGCGGTCATCCGGAATGTCGTAAGCGATGAGATATCGGCGGGAATCATTCCGAGTCATCGGACTTTCACCCCAACATA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGTGCTCCCCGATGAAGGGGAGCCAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 104756-99845 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFAK010000003.1 Flaviflexus huanghaiensis strain CICC 10486 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 104755 29 100.0 32 ............................. ACGACGTTTTCGGGGTCGGTGACTGTCCCACT 104694 29 100.0 32 ............................. GCCCTCCCCTACCTCGTCAACGGCTGGAAACA 104633 29 100.0 32 ............................. CCCTCGCTAGAGGGCTTTGCAGTAAGCATTAC 104572 29 100.0 32 ............................. CGGGCCGGAAGGTCCCCAGGGTGAGCAGGGCC 104511 29 100.0 32 ............................. CCCCGGAATTATGCGCAAAGTGACCCGGACTG 104450 29 96.6 32 ............................G CACCCCCGGCCCGCTGCAGAAACTCACCAGGG 104389 29 100.0 32 ............................. CCCCACCGCCCCCGCGCCGCCCCCGGCACGGG 104328 29 96.6 32 ............................T TATTGAGGTCACAGAGTGACAGAAAAAGAGAC 104267 29 100.0 32 ............................. CGGTCCGTGTCAAAATCGGACAGGTCCCAGGT 104206 29 100.0 32 ............................. ACCTACAGCCCCCGCGCCGCCCCCGGCACGGG 104145 29 96.6 32 ............................G CCGCCACCATGGGCGACATAGTAGACCGGACC 104084 29 100.0 32 ............................. CCCTGCTCCGAGAGCGTGTCCGCATGAGCCCG 104023 29 96.6 32 ............................T GTACGCAACTTCGTCATTTGCCAGGTCGACCC 103962 29 100.0 32 ............................. CTGCAGCTCCGTCATATCGCGCCATAGCGGTA 103901 29 100.0 32 ............................. GTCAATGAGTTCGTCGCGGGTGAGGGCGGTTG 103840 29 96.6 32 ............................T GGTTAGTGAATGGTGACCCGCACGACGAAACA 103779 29 100.0 32 ............................. CGTAATCATCAGTCCTCCGTCAGTAATCTCAG 103718 29 100.0 32 ............................. ACACGCATAAATTCATTTTTATCTCCTTTAGT 103657 29 100.0 32 ............................. AGGCATAGGGACCGCGCCTGCCGCTTGCGCTA 103596 29 100.0 32 ............................. CGCCACTTGGACCATCAAGGAAGAGAACTAAA 103535 29 96.6 32 ............................G CGGCGGGAGGAGCGCGGCGAAGCACTCACCCT 103474 29 96.6 32 ............................T GCGCTCGGTTTCGTTCACTGTCTTTCTCTCTC 103413 29 100.0 32 ............................. TAACAAATGAGTTTCATTATCTCAGTACCCGC 103352 29 100.0 32 ............................. GTTCTACATCCATAAAGCCCTAGACAGGACAG 103291 29 100.0 32 ............................. GTCGGCTCCCTGCTGTACCCCGTCACTATGCC 103230 29 96.6 32 ............................T ACGACTACGAGCATGAGCGCTATGTCCTAGTT 103169 29 96.6 32 ............................T CGGCGCAATCACTGACAGCCCCGCCGCACGAA 103108 29 100.0 32 ............................. ATGTACACAAGTTCATCGTTTTCTCCTTTGGT 103047 29 100.0 32 ............................. GTGTAGGTTTCTTCCAGGCTCCTGGCGACACT 102986 29 100.0 32 ............................. CGCGGGCCAGATGGACGGCCCCCACGAAGGGC 102925 29 100.0 32 ............................. GATTGCCGCTTGCGGGGGCGCGGGTGGTCGAT 102864 29 100.0 32 ............................. CCCGCCGATGGGGGCCGCGCCAGCCTCGACGT 102803 29 100.0 32 ............................. TCACCAGGGGATCGCCCGCGCCACGCGCCGAT 102742 29 100.0 31 ............................. CCTTGATCGTGCCGTCCCTGAGCCCGGCCAG 102682 29 96.6 32 ............................G CCGCCGCACGCGCCCGATCAAAGGACGCGTCA 102621 29 96.6 32 ............................G TGTGACGAGACCCTTCCAGCGAGACAGATCAG 102560 29 100.0 32 ............................. TAACCACCAAAGGAGACAAAAATGTACGTGTC 102499 29 96.6 32 ............................T GTACGCAATTTCATCGTCTGCCAGGTCAACCC 102438 29 100.0 32 ............................. GGCGTCGTGGAGGCGGGTCACCAGTCTTCACC 102377 29 96.6 33 ............................A CGTCGTGTTGGTCGCCGTGTCGAAGATCGGGGC 102315 29 100.0 32 ............................. GTTCTACGTCACTAAAAACCTAGACCGGACGG 102254 29 100.0 32 ............................. GTATTGTATCATTCTCCGGCTCCACTATATTC 102193 29 100.0 32 ............................. AGGCGTAAGGACCGCGCCGTCCGCTTGCGCTA 102132 29 100.0 32 ............................. ATACGCATAGGTTCATTTTTTTCTCCTTTGGT 102071 29 100.0 32 ............................. GCGGACGACGAGTTCGGGATCAGGGGAGGGCT 102010 29 100.0 32 ............................. TCCTGGACGGCCGTCCATGTGTAGGGGCCGGG 101949 29 96.6 32 ............................G GTCATGGTCTGGCGGCGGTAGACAAACGCAAA 101888 29 96.6 32 ............................T AGTAGGACCATTGCTCACTTATCTCCATGTCG 101827 29 96.6 32 ............................T TCGAAGTGGGTGGCCGGAGAATTGGAGTGTGA 101766 29 100.0 32 ............................. CCAAGTCAGGATGCACCGGCTTCCTCACATGG 101705 29 96.6 32 ............................G CGCCCCCACCTTCCCGTGTGTGGGAGGGCGGA 101644 29 96.6 32 ............................T GCGGGACCAGTCTCCGCACGGTCCGAGGCTGG 101583 29 96.6 32 ............................T GCGGCGCTAGTCTGGTCCGGTCTACTATGTCG 101522 29 100.0 32 ............................. CTGGAGCCTGTGCGGAATTGTTTGTCGGGGAG 101461 29 96.6 32 ............................T ACCCGCTACGCCTATCGCCCGTACCCTACTGG 101400 29 100.0 32 ............................. GCGACGTCGATCGCGGGTGGCACTCCAGTCAT 101339 29 100.0 32 ............................. TGCCGCCGTCGGGGCCGAGGTCGAGCTCAAGA 101278 29 96.6 32 ............................G CTGACGGGCGCGCCGGATAGCGGGACGGTGAA 101217 29 100.0 32 ............................. GTCGGATCACACATGTACCCGGTCACAATGCC 101156 29 96.6 32 ............................T GTGGCGGCGCGTGCCGCCGCGGTCCTCCAGGT 101095 29 96.6 34 ............................T TCGACGAACGTCCTGCCAAGCACCCTCGCGCTGT 101032 29 100.0 32 ............................. ACTCCAGCCCGGCACCGCACGCCGCTACAGCA 100971 29 96.6 32 ............................G CACGAACCGCGATACTGTCCGCCGCCCAGATT 100910 29 100.0 32 ............................. ACAAAAGGAGACAATGATGACTCTCTGCACAT 100849 29 100.0 32 ............................. ACTCCAGCCCGGCACCGCACGCCGCTACAGCA 100788 29 96.6 32 ............................G CCACTGACCGCGTCTGTCAAGGGTCCGGCGAG 100727 29 100.0 32 ............................. GTCTACTTGACCGTCCGCTACGACTTCTACGG 100666 29 96.6 32 ............................T CCTTCGACTCCGGAGACAAGGCGACAGCCAAG 100605 29 96.6 32 ............................T GCGTGCCAGCAAGCGTAGGGGCCGCGCCGGCC 100544 29 96.6 32 ............................G CCGTCGATCCGCGCCTTCAGGTCTTGCAGGTA 100483 29 100.0 32 ............................. GCGGACAAGACGCCGGGCGGGAAGGTGCTCGA 100422 29 100.0 32 ............................. TTGACGCTCATTTGGGTGGTGATCGCGTTGAT 100361 29 100.0 32 ............................. CCTGCGACGGGTGGCCGCCGTCGGCGGGAGAT 100300 29 100.0 32 ............................. CCACGGGCGGTGTCTCGTGAGGGCGGCGATCT 100239 29 100.0 32 ............................. TTCGCGTAACCGCACAGGAGGCCCCTCATGGT 100178 29 100.0 32 ............................. TCTTGGAGCGCGCGCCACGTGTACGGGCCAGG 100117 29 96.6 32 ............................T CTGAGCAACATGGCCAGGGTCAAGGCCCCGCG 100056 29 96.6 32 ............................G CGAATGCGCGACCGTTTCGTCGCCCTATACGG 99995 29 100.0 32 ............................. TGCAGATCATCCTCGGAATTCTCACACTCGCC 99934 29 100.0 32 ............................. ACGCTCCTGCTGGAGGTCACGGGATACGGAAA 99873 29 82.8 0 ................TA......G.TG. | ========== ====== ====== ====== ============================= ================================== ================== 81 29 98.5 32 GTGTTCCCCGCGCCTGCGGGGATGAGCCC # Left flank : GACGAGGCACTCTCGATCTGGTCCGGCAGAGCAGACGGCCGCGTGCCCAGTGGCCAGAACTACGGGTGAGGTGCGCGATGATCGTCTTGGTCCTGTCTGCCTGTCCAGTCGGACTCAGAGGAGACCTGACAAAATGGCTCTACGAGATCTCTGCCGGCGTTTTCGTCGGCAAGGTGAGCGCGCGCGTACGAGATCACCTATGGTCCCGTGTCGAGGAGTTCTCTGGAACTGGGCGGGCCATCCTTATCTGGACCACCAGGTCCGAACAAGGACTCGGCTTCAGAGTCAAGGACCACCATTGGCAACCGGAGGACATAGATGGTCTTACATTGATGCGGAGGCCTCCTCCATCCGCTCCTCCAAGCTCGGAGATGAGGCCCGGCTGGAGCAAAGCCGCTTCGTATCGGCGCGGTCAGCGCTTCTCCAACAAGAGAGGAGGCGAAAACTCTCAATTAAAGGGTTTAGAATAGAGGACACTATGTATTACCTGCTCAGGAAGT # Right flank : ACACGTTAGACGGACACTCAGACTACGAACCGTGTTTCCCGCACCCGGGCCAAGTCAGTACAGATCCAGCCGTCACCGGCTAAGCCGTGAGCGGATTCGTGTCGCCGCCTTGTCTGCGGTGACCTTGAGCCCGTCATGGCGCAGCGAGGCGCCAACCTGGCGCAGAAGTCGAGTTGCGTGCGCGGTCGGAAGCGTCGCACTCGGCTCCAGCTCGTACGGCTCGATATCAACGGCGAGCGGAGTGAATGGCTCGTCCCTCGTGACCGGCGGGAAGTGGGAGTCGGTGCGATGACCGTGCTTGCCGACGTGGGCCCATGCTTCCCGGAGGATTGCTTCTGCCTCTTCACCCTGGATGGCGGGAGACCGGGTGAGGAGAGCCTCGTGGCGGGCGGTCGAGCCAATCCGGCTACGTAGTGCCGCGTCGTCGAGGAGCGCGAGAATGTGTGCGACCCATTCATCCTCAGTCGCTGCAAGGAAGCCGGTCTCGCCATTGCGGATGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //