Array 1 331-65 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLO01000005.1 Gilliamella apis strain ESL0172 Ga0133556_106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 330 28 100.0 32 ............................ AACTTGGTCTGACAAATCACTTTTACCATTAT 270 28 100.0 32 ............................ TCGCCTCACCTCGAATACTGGACGTAATACCA 210 28 100.0 32 ............................ TGATGAATATAGGGTGTTCCATCCAAAATATG 150 28 100.0 32 ............................ ATAAACAACTCTAGTACAAGATTTAACCCAAC 90 26 82.1 0 ..........T........--.G.C... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 96.4 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : CAGTTCGCTCTAAATATAAAAGTTTATTTATAGACAATCAGATTGGAGTGCTTCATTTAGCGACATTAGCAATGTGCTGACAACTGAGAGAGATTAGCATGGCAAACAGGGATGTTTGGCAAGGCTGGTGTTTGTCAGGAACAAATACAGCCGATGCGTTAATAGCGAACGAAGGCGGAAGGCAGTCACGCAGTGACCATTTGCGTAGTCGCCGCGGGAGTTGGTAAAGAGGGTTCACACAAACCCTCATTACTCGGACGTAATCGGCATATAGAACTAGCTACCAAACAACAAAACGTCCGAAACTAAAAGAACCAAAAAATTTGAGGAGAGGGGTTTTTTGAAACTTAAATTTGTACCCATTTCTAACCCTTTTTTTTTGACTTAAAATAAAATGATTAAAAATCAAAACATTAAGAAGTTATTCAAAAAAAGGGTTTTTAATAGTAAAATTAGGCTTTGTCTTTTTGCCAACTGCATTTATAGTATGTTGTGTTCTA # Right flank : AAGTCTTAACAATTATTTACCAATCTGAATTTGCTATAATCACCTAATATATCTATACTTTTTTC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 751-65 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLO01000006.1 Gilliamella apis strain ESL0172 Ga0133556_107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 750 28 100.0 32 ............................ AAAATTGGATGACGGGCGCGCAGAGTTGCAAA 690 28 100.0 32 ............................ AACTTTTTCACCTTCTTGGGCGTCAACAAATT 630 28 100.0 32 ............................ CTCGCATTTTAAATCTGCAGGTATGCTTTTAA 570 28 100.0 32 ............................ TTTCGGCTCCCTCCCTTAGCCCACCTAATTTT 510 28 100.0 32 ............................ AACACCCAGCGTTACAGGGGAAGTTAAAACCT 450 28 100.0 32 ............................ GCTAGCAACAAGGGCGTAGGCATGGGCGAGCA 390 28 100.0 32 ............................ TAAACCAAAAGCCAGTAACAAAGATGAATAAG 330 28 100.0 32 ............................ TGTTTATGTTACCAATTGGGGCGAACAAAATC 270 28 100.0 32 ............................ TGAACTAAGAAAAGGTGCCATAAAATTTGAGG 210 28 100.0 32 ............................ AAACAGCGCAGAGCTTAGATCGTCACCTGAAT 150 28 92.9 32 ..................G...C..... ATAAACAACTCTAGTACAAGATTTAACCCAAC 90 26 82.1 0 ..........T........--.G.C... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.9 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : TCAGTTAGCTCTAAATATAAAAGTTTATTTCTGGCAAATCAGATTGGAGTATTTCATTTCGCGACATGAGCAATGTGCTGACAACTGAGTGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGACTGTTGTTTGCAGGAACAAATCACAGTCGGTGCGTTAACAGCTAACGAAGGCGGAAGGCAGTCACTTAGTGACCACTTGCGCGGTCGCCATGGTAGTTGGTAAAGAGGGTTCGCGCAAACCCTCTTTACTCGGACGTAATCTTTGAATAGACCTAGCAACCAAACAACAAAACGTCCGAAACTAAAAGAACTAAAAAAGTTGAGGAACGGGGTTTTTTGAAACTTAAATTTGTACCCATTTCTAACCCTTTTTTTTGACTTAAAATAAAATTATTAAAAATCAAAACATTAAGAAGTTACTCAAAAAAAGGGTTTTTAATAGTAAAATTACGCTTTGTCTTTTTGCCAACTGCATTTATAGTATGTTGTGTTCTA # Right flank : AAGTCTTAACAATTATTTACCAATCTGAATTTGCTATAATTACCTAATATATCTATACTTTTTTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 8462-8314 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLO01000006.1 Gilliamella apis strain ESL0172 Ga0133556_107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8461 28 100.0 32 ............................ TCAATGTTTTTAGCCAGTTGTTGCCCATCCTG 8401 28 100.0 32 ............................ AGCTTTGAAAGTTGCAATAAAGAAATCAATAA 8341 28 85.7 0 ....................A..TA..T | ========== ====== ====== ====== ============================ ================================ ================== 3 28 95.2 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : TTCCATATATTACCTAAACCCACAGCAGAACCGGCAGCTGCGAGCATAAATCCCATGCGAGAGCTCCACTGTGAATGACTTTTCTTCATAGTACCTGTACTCATGAATCTATTTTCCCTAGAGTTTTGATTAAATATTTAATTTTAGTTTTAGCAAAAGCCTAACTATTTTTTTATTAGATAAATAAAATGCTAAATCATGCCATGAAATAAATTTATAAACAAGAAAACATTATCATTTATAACGATAACCAATAAAAAATTAAATCGTTAACCTTAAGTTTAATCGTGTTTTGAAGTGGTCAGAGTAAAAAACGAGCAATAAAAAGTTGAGGAGTGACGTTTTTGGCGATTACATTTAGACTATTGCAACCTTTTTTTTACTTAAAATAAAATAATTTAAAAATCAATATGTTGAAAAATGGCTCTAAAAAAGGGTTTTTATTAGTAAAAATAGACTTTGCCTTTTTGCCAACAACATTTATAGTATATCTGGCTCTA # Right flank : TTTAAGTCATTACATTATGTTGACGAAAGAGATTGAAGGTCATGTCAAATATGCTTTTTTGACAAGGCTATTTATGTTCTAAAACAAATAATTGATAATCTATAAATAATTAACGTGAAAAAAACTAGTCGCGTAATGACCAGCTAGTTTCGCTGTCGATGGCAAAAACTAGTGGCTGTGTGTACCCCCTTATTCGAAAAAATCCTTTGTACTAAAATCCCCTCAGAAATTATTTAAACCTCTAAACGTTAGTGAGCTAAAACAATTCAATATGACAAAAAGTTGAGAAAAAGGGAGCATGAAATCTTTGATATTGCTAATCATCAGCCCATCGCATATATTACATAAAATATTTACTTCTCTAAAAAGAATAGCCATGACACAAAACATCGATTTGAACGAAATAGATAAGTTTGCAAAACTTGCTTCGCAATGGTGGGATCCCAACGGCCAATGCAAACCATTACATATTATTAATCCATTACGAGTAGATTATATAA # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.17%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 340240-339973 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLO01000006.1 Gilliamella apis strain ESL0172 Ga0133556_107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 340239 28 100.0 32 ............................ TGCCCGACTTGCTAATGCAGCAGTTAAACACT 340179 28 100.0 32 ............................ AACGAGCACAGATAGAGGTGAATCAGGTGGAT 340119 28 100.0 32 ............................ ACGGTAGCCTTGCCCCATAATGTAGGCATTGA 340059 28 100.0 32 ............................ ATCACTACAAATGGCTATAACACGCTCTTGTT 339999 27 92.9 0 ....................A...-... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : ACATCGGCAAGTGCCAATAATAAAAGTTTATTTTTATCAATCAGTTCGGTAAATTTTATCTAGCGACATGAGCAATGTGCTGACAACTGAGTGAGGTTAGCATGACAAACAGGGATGTTTGGCAAGGCTGTGTTTTGTCAGGAACAAATACAGCCGATGCGTTAACAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTAGTCGCCGCGGGAGTTGGTAAAGAGGGTTCGCGTAAACCCTCTTTACTCGGACGTAATCGCCGTATAGGAATAGCCACAAAAGCGCAAAACGTCCGAAACTCAAAGAATAAAAAAATTTGAGGAACGGGGTTTTTGAAGACTAAAATCCATCCCATCACTAACCCTTTTTTTTTACTTAAGATAAAATATTTAAAAATCAATAGGTTGAAAAATGGCTCAAAAAAAGGTTTTTTTTGGTAAAAATAGACTTTGCCTTTTTGCCAACAACATTTATAGTATATCGGGTTCTA # Right flank : TTAGTTAAAGTTATAACGCTCGAAATCCACCAAACTAGAAACGTTTATCAAAGGAGTTTTTTTAAGGTGAATAAACTTATCACATGCTATAATTGTTTTCACTCATAATTAAACTTTACACCTATTGTGAATAATAATTCAATTGACAACAAACTAAATGAAAAAATGGTGCTTATTTTCAAAGCACTCTCTGATCCAGTTAGAATTGAAATAATTAAATACTTAAAAAACATAAGAACTGAGGTCATTTGTGGTGAAATAGGCCAAGCGGTTGGTATCAGTAAACCTTCGGGAACTTATCATTTTAGGTTATTACAACAAGCTGAATTAATTAATGTAAGAAAAAGTGCTAGAGAAAAATATATAGGACTGAATAAATCAACATTTGATAAATATGTTACAGGCTTTTTTGATAGTCTTTAATATATTTAAATGTTGATTTAATCTTGAGTTTACTACTGGATGTTTATTAACTATTATAATTTGCGCCTTGTCGTTAA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 69462-69250 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLO01000004.1 Gilliamella apis strain ESL0172 Ga0133556_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69461 29 100.0 32 ............................. CGGATAGCATCAATATTAAAAAACTAGAATCT 69400 29 100.0 32 ............................. GTAATGGTAAAGACATATTTATATACCCGTGG 69339 29 100.0 32 ............................. CCCAATTAGGGCTTTTGGTGCCTCGGTTGGAT 69278 29 82.8 0 ............C.T.....A......AA | ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GTGTTCCCTATATACATAGGGATAAACCG # Left flank : AAGCTCACAAGCTAAAAGTATCACATTAAATTTTAATAAATGCTACAGCCGTGAACAATTCAATGGTGAATGGGATAAGGAAATTGAAGTTTCTACCCGTTTATCAAAGGATAATGTTGATCTTTATTTAGCATATCAACATGAAGATAAAATTCTGCCTTACTCAAGTAGTAGTGAGTATGCTTGGGAACAAAGTCATCTTACAATTAGTGCATCTAAATGGGCTAGGGTTAAAAATGACATTCCACAACTTGATCAACAACATCTAGAAAAATTAAGACAACAAATACATAGATCTAATGCAATAATTGTTTTAATTAAGTTAGAAAAAGAATCTTCCTTTTATACTAAAGAATTAGGTTTTTATCTTAATTAATTTAATCCACATTTAAAAAGTAATAATTCTATCTTCTAATAAATTGATTAAAATTTAAACCAATAAAATCGGTAAAAAATGACAACTGTATATTTCAATTATAAAACAATTAGTTATAATTAGA # Right flank : AGAGTTAGCAATTAGTTAGAATCAAATATTAATTAGCTTTGATTAACCAAAGCCAAAATATTTTGGATGGCTGTTTTAGCTTGATGGCTATTTTTCCAACATGATGATCCTGTTAGTAAAGCACCTTTGTTAAGAATTTCATCTAACGAGGCATTGCGTAATTTATCAAAAGAATCAAGTTGCATCTCTTCAAGTCTTTCAATAATTTTAGTGCCAACAAATTTTAATTCTAATAATTGTTGGCGTTCGGTTTCTGAAAAGGCCATTTTTTCTGTCCATTTTAAAAAATTGTTATGATGTTACTAATGCGAATTTAGTTTTTTCCATTTCCTGATTTTAGTTCTAAAGGATTTAAATGGTGCAACTGAATTAATGTGGATAAATCGTGCCACAGGCCACGCTGAAGGATAAGGCTTAGTCCAATTGCGAGCATCTTTAGTAAAAAGCGTATTATCATCTAATGACTCAATCCAGCTATTCCAAGTAGCTAGTTTCTGTTT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATATACATAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 350981-351488 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLO01000004.1 Gilliamella apis strain ESL0172 Ga0133556_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 350981 28 100.0 32 ............................ AGTTAAGTTGTGATTATACCCGCAAATTAAAT 351041 28 100.0 32 ............................ AGTCAAATTGCTGTCTGTGTCAGCGAAAATAA 351101 28 100.0 32 ............................ TTGACAACTCAAAATTACACGATTCGGATCAA 351161 28 100.0 32 ............................ GGCTCATTTCGAAATATGCCAGTTACTGATTT 351221 28 100.0 32 ............................ AGTACGAGGGGCACCCATAAACTGCAAAGTAC 351281 28 100.0 32 ............................ TCTTTTAGTAAAATCAGTTAACCCTTCATTAA 351341 28 100.0 32 ............................ TAGCCTCGAGAGAGACCGACTAGCCATCAAGT 351401 28 100.0 32 ............................ CATTCATGTTAGCACCAGAATTAACAGATGAT 351461 28 85.7 0 ....................C....TGG | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.4 32 GTTCAACGCCGTATAGGTGGTTTAGAAA # Left flank : AGTACTCAATTTTACCTCTAATTTAGCAGGATTAATCTTCTTTATTGCTGGCGGTGAAGTGGTATGGTCAATTGGTTTAGTTATGTTAGTTGGCCAATTTATTGGCGCAAGATTAGGTGCAAAAATGGTTATAGCTAAAGGACGAAAATTAATAAGACCAATGTTAATTACCGTTTCAACCATTATGAGTGTCAAATTAATCTATGAAAACTTCTTTTAATCATCGCTAATAAAATTTAGAATCAGTTTTAGTACAATCAATAAGCTAACAACCAAGAATACATTAGCCAATTAAAAACCCCGTTCCTCAAAATTTTGAGGAACGGGGTTTTTGCATTTCCCAAAGTCTATATTTTAAATCAATGATAAACCCTTTTTTTTACATCAAAATTAATCTGATAAAAATCAGATAGTTGAAATTAACCGCAAAAAAAGGGTTTTTAATATCAAAATTATCATTTACCTTTATTTGAACAATGATTATATTATATTGGTTTCTA # Right flank : GTATTGCTAAATAAGCTAAAAAACTGAACTCACATGTTCAGTTTTTTTGTATACTAACTTTTTGTATTCACTCGATAAGAGAAAATATAGGCAATAACAGCAATAATACCAAATACAAGAGATAGAAAAAACATTATCTGATAGGCGCAATTTACTGAAATTATTTGATCTAGAGTTAGGTTGATTAATATTCCTGATAATACGCTTCCAAATGCACCTCCAATTTGCTGTATCACACGAGTGATAGCACTTGTATCCTTAATCTGATTTTTTTCACAAAACTCAAATGGAGAAGAGAGAACAGCAATCGTAGCAACACCTAATCCGGAGCCTCTAACAGTAAAACCGATGATTTCAGAGGCGTTTCCACCTACTTGAATTATTAATATACTTATTGCTGATATTATTAAACCTATACCAATAATTAGAAATGAATTTATCTCTCTTAAAGATTTATAAATAAATTTTCTCGCCAACCAAGCTCCTACACCTTGTAGGGC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACGCCGTATAGGTGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 363747-364014 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLO01000004.1 Gilliamella apis strain ESL0172 Ga0133556_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 363747 28 100.0 32 ............................ CTGGAACATGTCCCCGTCACCGCGATTTTACC 363807 28 100.0 32 ............................ AGTACGAGGGGCACCCATAAACTGCAAAGTAC 363867 28 100.0 32 ............................ AGCGCAAGTTCTTTGATTTCGTCGAATGTTGT 363927 28 100.0 32 ............................ ATGCAAGAAGTGGGGGAAATCCCAGATGGTTA 363987 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 CTTCAAGGCTGCATAAGCCGTTTAGAAA # Left flank : GCCGAAAAACGTTTAACCGCACAAGGTAAATGGTCAGCCGAGGTAAAAAACAAAATGGTTGAAAAATGGGGCAGCCTTCATTTGAACTATCCACACCTTCATTTTGCTAGCAAAAGCACTGGGCAACATTTTATTATGTGGCTGAAACAACAAAAATGTGCAACGGCTGTTGAAGGAACATTTAATAGTTACGGACTCAGCAAAACAGCAACTGTTCCTGATTTTTAACTAAATAATAAGGGCATTATTATAATGCCCTTAGCTGCCAATAATTAACAATATTAACGGCACAAATTTTGAGGAGCGTACTTTTTAAAGCTAAAAAACTTGAGGAAGGGGTTTTTGGAACCTAAATACCATGCAGTGTTAACCCTTTTTTTTAACTAAAAATAAAATTTCTAAAAATCAATTAATTGAAAAGCCACCCAAAAAAAGGGTTTTTGCAAAGTAAAATAGACTTTGCCTTTTGCACAACAATGTTTATAGTATTTGAGTTTCTA # Right flank : ACAACTTATCAAACGCCCAAAGTTCAAGGCTGTAAAAGTGGAAAATTTTGAGGAGCGGGGTTTTTAAGACTAAAATCCATCCGATAAATCACTAAAATTAGTTATAACATCAGCTAGGGTCAATAATAAAAGTTTATTTTTATCAATTAGTTTAGTGCTTCTCATTTAGCGACTTTAGCAATGTGCTGATAACTGAGTGAGGTTAGCATGGCAAAAGGGAAGTTTGACAAGGCTGTTTTTTTGTTAGGAACAAATAACCGCTGGTGCTTTAAGAGCGAACGCAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGTTGGTAAAGAGGGTTTGCGCAAACCCTCTTTACTCGGACGTAATCTCCGTATAGAACTAGCTATTAAACAACAAAACGTCCGAAACTCACCGAATAAAAAAATTTGAGGAGCGGGGTTTTTAAGACTAAAATCCATCCGATAAATCACTAAAATTAGTTATAACATCAGC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAAGGCTGCATAAGCCGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 4 479194-479527 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLO01000004.1 Gilliamella apis strain ESL0172 Ga0133556_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 479194 29 100.0 32 ............................. AGCCTGTTCCTCTTTCAGCTCTAGATTGATCC 479255 29 100.0 32 ............................. GAACAAGCTCAAAGCATTTTAGAACAGATGGA 479316 29 89.7 32 .........G.G....C............ TATACCGGTCACGATAGCGAATTTAAATGTGA 479377 29 96.6 32 ..............C.............. CACATAGCACAAAACGGGTTACGATGTAGATA 479438 29 96.6 32 ..............C.............. AACTCACACCGAGTTGCGCTGCTTGATAACTT 479499 29 79.3 0 C...........T.C...........TTA | ========== ====== ====== ====== ============================= ================================ ================== 6 29 93.7 32 GTGTTCCCTATACATATAGGGATAAACCG # Left flank : GTTAGGCTATCAAGATAAAGTTAAACAAGGATTGCTTGAACATAAGATTACTACAGTCTCAAGAAGTGATGGTAGTGAAAAAATAGTAGAACAAGTGTTAGTTACACCTAAAGGTTTGGCGAAACTTTCACAAATGCTAACAGCACACTAACCAATTACAACAAGCCCCTTTTGGGGGCTAATTGAGGATGTAGAAATGAACAGAACGAGGATAGCAGCATGAAATTTGTAATTGATGGTGACAACTACGAAATGATAGTTAAAAATCTGGGTCAAGCTAAGTCTCTGGCTTATATTCTTGGGAGCAATACAGCTGAGGATGAGGACAAATCTAATGCGTTTTGGGTAATACAGGATCTGGTTAACTACGCATTACATTTAGTAAAAGATTCTGAAAAAGTTTAAATGATTCCCCTTGTAACAATAATTAAAGTTATAAGGGGATTGGTAGAAATTTTTAACTAATTATTTCAATTATAAAACAATAGGTTATAATAAGA # Right flank : ATGCAATCGGTTTTTGAACAAAGTTTATTGTGTATAATGTTCTAGTTCACTGCCGTGTAGGTAGTTTAGAAATCTGATATAAAAAAATACTCCATTTTCCTTTAGTTCACTACCGTGTAGGTAGCTAAAAATTCACACCAACCACCTTCGCGTGGTTTTTTATTGCTCCGAATCCTTAAATAACATACCATTACAAAAAACTCAAAGATTAAGGGAATGGTATGAAGAAGATTATGTTGTGTTTGTTGTTATTTCCACTTTTTGTATTTGCCAAAGAAATTAAGTATAAGGAATGGAGTGTTAGAATCAACACTGATCCAATAACAGATGAAAAAAAAGTGTCAATGACTTCAGTTTATGTATCAGACAGCACTTCAATAAGTAGCGCTTTTTTTACAGTTGGTTGTGATTTAGTCGTTATTACTCCATTCTCCGTCGATAATAATCTGAAAGGTTATGAGGATGGGCTAATTAAGGTTATTTTCAGAGCAGACAAAAAA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTATACATATAGGGATAAACCG # Alternate repeat : GTGTTCCCTATACACATAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 947433-947639 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLO01000004.1 Gilliamella apis strain ESL0172 Ga0133556_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 947433 28 100.0 32 ............................ CTTGGGGGTATCTTGATTTTGTTCAATTGCGA 947493 28 100.0 32 ............................ CCTACCAATGAGCAAATAGCATCATCCGACAA 947553 28 100.0 32 ............................ AATTAACAGCCAAAAATAAATAATTAAATGTT 947613 27 78.6 0 ...........CA...T..-..C.A... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.7 32 GTTCACTGCCGAGTAGGTAGTTTAGAAA # Left flank : AAGCCAAGTATAGATTTAACGCAAGTATAAATACATATTATTTTGATGCTTTTTTATCGAAAATAAAAGTTTTTTAAATCTGTTTTTTACAAAATAATCATGATCAAATCATGCTCGCAATTTTTTATTTGATGATGATTGATATGACTTATCGTGGTTATATGGATATTAGAAAGAATGCATTCTCAAATAGAATTAATAAAGCCTGCATTATGAGCACTAGATTCGAGTTTTAAAGACTCTTTTTTACTCAATGTCGAACTAGCCCAAAATTAATTATTGAGCGAGAAACAGCGCATATTAAAGCAAAAAATATAATTGATAAATGGAATAATGTTTTGTCTGTAATTAGACAACATTAGTAAAACAACCCTTTTTTTACCGACACTTATAATTCATTTAAAATCAAACAATTATAAATGGGTGTGAAAAAAGGTTTTTTAGTTATAAATTGGTTATTATTCTTTTTCTGAACAAAGTTTATTGTGTATAATGTTCTT # Right flank : ATTTTCTAGAAACAGTTTATTAAAAATGTCTAACTCATGATTTAGGCATTTGTCACTTTTTGACTGCTGCAAAATGATGAAATTGGCATTTAAAAATTTGAGGAAAAGGGTTTTTAATAACCGCAAATTTAGCGAAAAAATTAAATGTTAATTCCGAAAAACAAAATTGTAACTTAAACTTGAACGCTTAAGCAGATCACTATATTATACGCGCCTTAAAATTCATCAATCAGCCATATACTTGAAAGAGTCCTAATGTTAATTAATGCCAAAGATATTCTTGAAAAATTAAATCCACATAATAAAGTAAACTACGATTCAGTTTTGAAAGAGGTGATTGCTGATTGGCAGTTAGCATCAGCGCGACCAAAGTTACTTATTCATAGTTGCTGTGCACCATGTAGTACTTATGTACTGGAGTATTTGGCTCAGTATGCAGATATTACTATCTATTTTGCTAATTCGAATATTCACCCGCGAGTAGAATATGAGTATCGTAG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 1307697-1307189 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGLO01000004.1 Gilliamella apis strain ESL0172 Ga0133556_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1307696 28 100.0 32 ............................ TTGTGTTACATTTCAAAATCATCAACAAAAAC 1307636 28 100.0 32 ............................ TCACCAATAATTATTGATTCGCCCACTCTCCT 1307576 28 100.0 32 ............................ TGTTGCCGTAGCTTTACAAGAAAAATCACTTT 1307516 28 100.0 32 ............................ TAAAGTTCGAGGTTAAGATTTATCGTGATGAT 1307456 28 100.0 32 ............................ AACCGAAAACGTGACGGTTTGGGTTTCGAGTT 1307396 28 100.0 32 ............................ GTCGTCATTTTCTGCTATAGAAAGCGCTTTAA 1307336 28 100.0 32 ............................ TTTCTAATTCAGCCTTTAATTGTTGTAATTCG 1307276 28 100.0 32 ............................ TATACATGTATTATTCATAATTAATCTAACCC 1307216 28 96.4 0 .................C.......... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.6 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : ATTGTTTTTATAATATTAATGCTTTATATGCCTGCACATCTGAATTTGAAAAATAAAATCCAATTTTATTCTTCTTACTTTTTGTACAGTTTTTCTGGGATAAATTTGTTGTTTTCTTTAATATTTAGTCGATATTTTATAAAGATTTTTTATTCAAAAAGATAGTTGTTTTTTGCTTATTGGATAAAAGAGCAAAGTATTCAATTATTCTAAAAAAGCATACGATTAATTAATTGAGATTTCTAGGTAAATTAATTTAATAATATATTTCATTATGAAGAAATGATTGACCATAGAGTAAATAATAAAGGTCGATTATAAAAAGTTTGAAGAACGGGTTTTTTGAAATCTAAAGACTCCTCATCACTAACCCTTTTTTTTGACTTAAAATAAAATGATTAAAAATCAAAACATTAAGAAGTTACTCAAAAAAAGGGTTTTTACTGGCAAAAATAGACTTTGCCTTTTTGCCAACAACATTTATAGTATATGGGATTCTA # Right flank : TGGTAATTACGTCATTGCTTGCAAGGTAGGTAGTCACTAAATTCACACAAACCACCTTGGAACGGTTTTTTATTGCTCTTAACCCTTAAATAACATACCATTAACTAAAAAGGGGATGGTATAAAAAAATTGCTCTTCTTATTATGTCTAATACTTTTATTTAACGAATCATGATTATTTATATTCAGTTATTTACATATCTTAACAAAATCAGCAAAACAAGAATTGCTAAAATTAATGAGTTTATTTATACTTTTCGAATATAATAAAATATATTTTTATTGAAACAAAACAATCGGATATCGTGACAAAGGATTGAAAAAATGTTAAAATACAGTTGTTTAGAGGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCATAATTTAGGATTATTTAGCCGACGAAAGTTAGGTTATTTATTTCAGAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //