Array 1 582285-580956 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEOK010000001.1 Listeria monocytogenes strain 255 NODE_1_length_632323_cov_31.331628, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 582284 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 582218 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 582153 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 582089 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 582023 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ATC [582014] 581955 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 581890 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 581825 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 581759 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 581695 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 581630 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 581565 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 581500 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 581437 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 581374 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 581308 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 581245 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 581180 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 581114 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 581049 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 580985 29 93.1 0 .......................C....C | A [580960] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 510317-513195 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEOK010000002.1 Listeria monocytogenes strain 255 NODE_2_length_518623_cov_36.575746, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 510317 36 100.0 30 .................................... TAAATTCTTTAATGATATTAATAAAGAAGT 510383 36 100.0 30 .................................... AGCATTTTTTATTGAAGTGAAAAACGAGAT 510449 36 100.0 30 .................................... CTTGTTGGTAATTTATCACCTGTAGCAAGT 510515 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 510581 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 510647 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 510713 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 510779 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 510845 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 510911 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 510977 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 511043 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 511109 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 511175 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 511241 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 511307 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 511374 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 511440 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 511506 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 511572 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 511638 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 511704 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 511770 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 511836 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 511902 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 511968 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 512034 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 512100 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 512166 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 512232 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 512298 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 512364 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 512430 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 512496 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 512562 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 512628 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 512694 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 512760 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 512826 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 512892 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 512959 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 513025 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 513091 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 513157 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [513182,513188,513191] ========== ====== ====== ====== ==================================== =============================== ================== 44 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //