Array 1 224029-223393 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031818.1 Klebsiella pneumoniae strain INF235-sc-2280127 plasmid unnamed1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 224028 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 223967 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 223906 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 223845 29 100.0 32 ............................. CGAAAACGGCAACCTTCATAAAAACGTCTTTT 223784 29 100.0 32 ............................. CAGCGTCTGAACGGACGAAACATCCCTGTTGA 223723 28 89.7 32 .....-......TC............... ATGGGCTGGCGCGACTCAAATGCCCGTTTGGC 223663 28 93.1 32 ..........-.T................ CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 223603 29 100.0 32 ............................. GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 223542 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 223481 29 100.0 32 ............................. CACTACCAGATCCGAATGGACACCCGTAATGA 223420 28 93.1 0 .......................-....A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.6 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTGCATACCGCGAGGTATGGGGCGAAGCGTTGACAGGGGTGTTGACAGGCCAGCCATTGAGCCACGAAATGTATATTAAAT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1028634-1031971 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031817.1 Klebsiella pneumoniae strain INF235-sc-2280127 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 1028634 29 100.0 32 ............................. ACAGAAACCAGCAGCGCTATAACCTTGAGGGG 1028695 29 100.0 32 ............................. ACTGCGATTCGTTGACGATTATTCCTCCGCGA 1028756 29 100.0 32 ............................. ACCCAGCAGCGTCTGCAGGACTTCGCGGGGAT 1028817 29 100.0 32 ............................. CTCATAGGTATAGGCTGAGTTAACTGAACCGG 1028878 29 100.0 32 ............................. GCTCGCAAGTTACATCGCTGCTGTGAGTGTCA 1028939 29 100.0 32 ............................. GTTTCGCACTCGCCGTTCTGACTGCTGCGCCA 1029000 29 100.0 32 ............................. GATCTCGATGAGGAGATTCAGATTCAGTGTAT 1029061 29 100.0 32 ............................. TCATAGCCGCCGCCCATGCAACGCGCTATCAG 1029122 29 100.0 32 ............................. CTGGCGATCATTAACGAGCCGCTGGGTAAAGA 1029183 29 100.0 32 ............................. CCGCTAAAAGTACCTGTTGTCCCACCAATACC 1029244 29 100.0 32 ............................. CCCGCGGGGATCTGATGATCCTGGGCGGAAAC 1029305 29 100.0 32 ............................. GTGTGAGAGCAACCACAGCAATGACGAAGAGT 1029366 29 100.0 50 ............................. CTGAACGGGGATAAACCGTATCGCATCCGTGAACTGCCGGTGCTCCAGAA 1029445 29 100.0 32 ............................. AGCGCCGCTGGTGATTCTGGCGAAGAGGACTT 1029506 29 100.0 32 ............................. GGTTTAACCGACATTCTCTCGCCCGCAGTAAT 1029567 29 100.0 32 ............................. AAACGATAAGGCGTCGGTTACGTGAGTTTTGA 1029628 29 100.0 32 ............................. CGCCGATCGTGTTCAGTAGCAACGGGTATGCC 1029689 29 96.6 32 ............................T TCGCTGTATTCACTCACCAGCTGGCTGCGCGG 1029750 29 100.0 32 ............................. GATCTCGATGAGGAGATTCAGATTCAGTGTAT 1029811 29 100.0 32 ............................. GCTCAAATCACAGACGAACGTTTGGCAAAAAT 1029872 29 100.0 32 ............................. CCTACAGTCACAGCAGGCGGCCAGCATGTGGG 1029933 29 100.0 32 ............................. TTTTACATCTCCCCCAGGAGACCTTGGGGGAA 1029994 29 100.0 32 ............................. GCGAGCTAATGCCATACCGCTGTTGTAACGAT 1030055 29 100.0 32 ............................. GACCAGAAAGCGTGGGCGCTTTTCCGCTCGTT 1030116 29 100.0 32 ............................. CCCGCCGGGATGGATTTAACCCCGCTCTTTTC 1030177 29 96.6 32 ............................A CACTGGCAACCCACACAGAGCGGGTGCCTCCC 1030238 29 100.0 32 ............................. GCTGATTTAATTGAGTCGTGGACGCCCCCTGA 1030299 29 100.0 32 ............................. TTGGCGGCCTGCCGGCGGTTTACGCGGCGGGC 1030360 29 100.0 32 ............................. GTGTATAGCGAAGTGAAGCAAAAAATGGTTAA 1030421 29 100.0 32 ............................. CAATCGTAATTTCCAGTCAAGGCGGCTTTACG 1030482 29 100.0 32 ............................. CGGGGATCGAGGATTTCCGTTTTCACGACCTC 1030543 29 100.0 32 ............................. GCTACGGTCAGCGCAGGTGATGGCTACCCAGT 1030604 29 100.0 32 ............................. TGGAGTCTGGTGCATTTGACGGCGCGGTATTA 1030665 29 100.0 32 ............................. ATCTTCGTCATTGCGATACATACTCACTGCCT 1030726 29 100.0 32 ............................. CCAGCGGATATGCTCCACGACATGATCAGCGC 1030787 29 100.0 32 ............................. TAAAATCGATACTTCATTCGCTGCCAATAAGC 1030848 29 100.0 32 ............................. CGTCGCTGAATCTCCCAGCCCCAGGTTCGCGC 1030909 29 100.0 32 ............................. CCATCAATTTCCGACGTTTTATAACGTCCCTG 1030970 29 100.0 32 ............................. ACCAGATAGAGATCCACATTGAGATTAACCCG 1031031 29 96.6 32 ............................A CGCGGAACCGTAATTCATGCATAAAATTTTTC 1031092 29 100.0 32 ............................. GGAATGGGAGACTGGCGTTTCATGATTAGTGA 1031153 29 100.0 32 ............................. CGCCCACGCTTTCTGGTCCATCACAGCGATAT 1031214 29 100.0 32 ............................. TTGCGCTCGGCGGCGCTGTTTCAACCGCCAGA 1031275 29 100.0 32 ............................. GCGGCGGGTTTATGGGGAAAGACTGGGACAGT 1031336 29 100.0 32 ............................. AACTCTGGCCCCTGGCGCGGCGCCAGGATATC 1031397 29 100.0 32 ............................. CAGCCAGCCATCTGCCGTTGAGTCGATGCTGG 1031458 29 100.0 32 ............................. GGCAGTCCAGTTATGGTTCGGGTCCGCTGTGG 1031519 29 100.0 32 ............................. GGGCTCAAGGCCGTTATTTTCTACGTGTTGAA 1031580 29 100.0 32 ............................. GATGCCAAAAAACTGTTTGCGTTTGCGTGGGC 1031641 29 100.0 32 ............................. CCGCAAGCCGTATCAACGAATTACTGCTCGAA 1031702 29 100.0 32 ............................. CCCCCCACTCGGTACGCATCATGATATTGAGC 1031763 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 1031824 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 1031885 29 100.0 29 ............................. GGGGTCACTTGGGTGAAACTGAACTAACT 1031943 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================================== ================== 55 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCTGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //