Array 1 27434-26105 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYDQ01000016.1 Listeria monocytogenes strain CFSAN044761 CFSAN044761_contig_0000016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 27433 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 27367 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 27302 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 27238 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 27172 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ATC [27163] 27104 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 27039 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 26974 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 26908 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 26844 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 26779 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 26714 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 26649 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 26586 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 26523 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 26457 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 26394 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 26329 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 26263 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 26198 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 26134 29 93.1 0 .......................C....C | A [26109] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 7826-5277 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYDQ01000004.1 Listeria monocytogenes strain CFSAN044761 CFSAN044761_contig_0000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7825 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 7759 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 7693 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7627 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7561 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7495 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7429 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7363 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 7297 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7231 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 7165 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 7099 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 7033 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 6966 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 6900 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 6834 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 6768 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 6702 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 6636 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 6570 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 6504 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 6438 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 6372 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 6306 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 6240 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 6174 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 6108 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 6042 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 5976 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 5910 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 5844 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5778 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5712 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 5646 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5580 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5513 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 5447 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5381 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5315 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5280,5283,5288] ========== ====== ====== ====== ==================================== =============================== ================== 39 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //