Array 1 24075-23829 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEQD01000011.1 Haemophilus parahaemolyticus strain C2010039593 C2010039593_S33_ctg_1513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 24074 37 100.0 31 ..................................... CTAATGTTTTATGTACTTGTCGGCAACCTAC 24006 37 100.0 34 ..................................... TCAATCTGTTGGGTAAACTGACGGTTCTTTTCAT 23935 37 100.0 33 ..................................... CTGTCCCACGAAAAAGTAACTTGGCATCTTTAC 23865 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 4 37 100.0 33 GTCGAAAGACACTGCCCTGTTCCAAAGGGATTTAAAT # Left flank : GCGGATATTCCTTTGCATATTTTAAAATTAGCAGGGTTTCAACCTTGTAAGGGATGTTGCAAGCATTTATTAGCCGAGTGGTAAATAAATGCTGAAACCCCTATTATTTTTGACCTCACTTTATTTGAAAGTGTTAGGGTAACATCTAAATCTTCAACTGAAATTTACAAGCCTTACAAAATCCCTATCAATTGATTTCTATATATCACATATCATTTTCAATTTCTTGCCTTAAGGCATTTTCTTTATCTGGTTTATATTTTAATAAATTATTTCAATAAGTTATTTTCAATTTTGCCAATAAGGTTAGACATTCTAGAGCTAGAAAAAATAAAAAATAACGGTAAAATAGACCGCACTTTCGATTGGTTTAGAAAGGAACAAAATATGCAACCTTCTTATTATTTGCTCAAATTAAGAGCCAACTCCTTAACCTCCCCAAAAAATTGGGAAGTGGGTCTGAAAGGTCGCATGACTCCTGCCTCCAGCATACCGCTGCA # Right flank : AACAAAGAGGCTGATATTTACTATAAATATCAGCCTCTTTATCTATTTGAGAAAACGTCTGTGATTACAAGCGGTATTATTTTTCCTCTTCTTTGCGAATTTCCTCTTTTTCTTCTTCCAAGATCTCAGCAGCCTCTTCATTCAAAGCTTTAGCATCACAATGCGGTTTGATAAAGGGTTTTGGTGTCCAATATTTTTTCACAATTTCGCTAGAAAAGCCGTGTAGAACCTCCTCATTTAAGCGTTCTTGATCGAGCGATCTCACTTCGGCAATCACTTCATCCGCTTCTACTTGATTAATACCGAGTTTCATTAAGGTGGCTCGGCTTAAAGTTAAGGCAGATTCAAACGTTTCACGCACAATAAAGTTTACATCCTGTTTGATCAAACTTACCGTCGTTTGGCGGTCGTATGTTCGGGTTAAAATTGGCAATTCTGGGTAAGCCTCTTTTAATTGACTTACAATTGCTTCAATGCGGTCAGTATCATTAATCCCAATC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACACTGCCCTGTTCCAAAGGGATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 27601-26417 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEQD01000011.1 Haemophilus parahaemolyticus strain C2010039593 C2010039593_S33_ctg_1513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 27600 37 100.0 36 ..................................... ATAACATTTATGCACATTTACTCGGTAAATCATTTT 27527 37 100.0 36 ..................................... CGTTAATACGATACTTCACCTGTTGTTTTTCTTCAT 27454 37 100.0 35 ..................................... TTTCTGCTAGCTGATCCATTAGTGCGAGTGATTTC 27382 37 100.0 35 ..................................... AATTGTCCCTTTCTCTGCTTATCGGATAGCTCAAG 27310 37 100.0 35 ..................................... TTTCTTCTCTATTACTCATTTGTTTGTCCTTAGCC 27238 37 100.0 36 ..................................... TTAGTTTTTCTTGTGTTTTTTGTGCAGATTCTTTCC 27165 37 100.0 33 ..................................... TTAACCATTTTGTTTTCTCCTGTTTTTATTAAA 27095 37 100.0 34 ..................................... CATTTTCATAGTTCTACTCCTGTTGATTGTTAAG 27024 37 100.0 35 ..................................... AAAAAGGCGGCTGGGTAAATGCACACGCTCACGCT 26952 37 100.0 33 ..................................... TATGTCCATCAGCTTACTAGCTGATGATGTCAA 26882 37 100.0 35 ..................................... GCCCTTTTCTCTGTTTTTCAGAGAGTTCTAGTGCA 26810 37 100.0 35 ..................................... CGAATAACGTATTGTCAATCTGGAAGACTTCTTGT 26738 37 100.0 34 ..................................... TATTTCTTATCGGATGCAAACCAATCAGAGATTT 26667 37 100.0 34 ..................................... TGCATCTTCCATCCCCTTCAGTAAATCTTTCATC 26596 37 100.0 35 ..................................... TATTAGCCTTCTCAGCTAATTGACGTAGTTCTTCC 26524 37 94.6 33 ................................A.A.. ATTGCTCTAAAGCAATTTTGGTTTTCTGTGTTG 26454 37 70.3 0 ....A......TC......CCTA.........ACAT. | G [26423] ========== ====== ====== ====== ===================================== ==================================== ================== 17 37 97.9 35 GTCGTAAGACACTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : ACAAGCGGTGACTTTTCAATTTTAGGAGGAAATATGCAATATCTCATCGGTTATGACATTACTGATGATAAACGGCTACAACGCATTCATCGACGAATGATCAATTTTGCGACACCAATTCAATATAGCGTATTTTTATTTGACGGTTCTGAAAAATTACTCAAAAAATGCTTGGAAGAAGTGATGGCAATTTTTAACAAAAAAGAGGACGATTTACGCATCTATCCCTTGCCCTCCAACTGTACTCAATGGCAGTTAGGCAAATCTTGTTTACCAGATGGCATTATTTGGACGGCAATGCCGACAATGATGAGATAACCATTGATCATCACTAAAATTCTGGTAAAATTCCTCACGTTTTCGACCGCTTGATATGTAAATGAAATGTTAAAACTTGTTCAAAATTTAGCCAAATCAAGACCCAACTCTCTGAGTCTCGGAAAAAGTTGGGAAGTGGCTTCGGTAAGCCTTGTCGCACAAGGCTTGATGACCCCACTGCA # Right flank : GCTAAAGTGCGGTTAGTTTTCAATATAAATTGAAAATTGACCGCACTTTTTATTTCCTTTCATTTTTACAAATTTGTATTTTCGCCTTTTTATTTATAACTTTTCTATAATTCACTCCGTCAGTAATTGATTTTTAGCTCAGAGGATTGAGCGCTAATTTAGTTTGTTAAAAATCTATAAAGAGAAAATAGAGAATTAAGTAATTATTGGCATATAAAACAATTGTTCTAATTTAAAAATGTGAGGGAATTAAAATGATTGCAACTAAAAATTGCAAAACGACAAGGTTTATTAAAAGGGCAAGAAGCTGGTTTTATGTGGCATTATTGGTGGAAAGATCGCGTCTTTTTTATTTCGACAAAATCTATTTTCGCCTCAACAGTGCATAAAACACAGGGTGCCACGCTAGATTCTTCATTTGTTTATACTTCAGATTTTGCAGCGGCGAAAAATATTGATTTAGAGCTGTATTATCAACTGTTATGCGTTGCGATTACTCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTAAGACACTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 127633-129321 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEQD01000002.1 Haemophilus parahaemolyticus strain C2010039593 C2010039593_S33_ctg_1495, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 127633 37 100.0 34 ..................................... AAATCAATCCATTGCATTCCATCATTATTAATTA 127704 37 100.0 33 ..................................... ACGATTTGACATTTGTTTATCCTTAGCCCAGTT 127774 37 100.0 36 ..................................... TCCATCAGCTGACTAGCAGTTGATGTAATACGATCA 127847 37 100.0 34 ..................................... AAAACTTTTTTTATTTGTATGCGTGGTTTGAAAT 127918 37 100.0 38 ..................................... TTTTAGGATCTACGGCATAAATTTTTTCAAGTTGATTC 127993 37 100.0 35 ..................................... GTCAAGGCTTTCACCTTCACCTAATTTGCTCGCAA 128065 37 100.0 36 ..................................... AATTTACCAGCTAAAGTGCTCACTACATCTGCTGAG 128138 37 100.0 34 ..................................... ACAAATTGTGAAGTTATTACCATATCCATATTCA 128209 37 100.0 31 ..................................... AGCTTCAAGGATTTCTTCCCTACGACTAGAA 128277 37 100.0 35 ..................................... TATCTTCATAACAGGTAACTGTTGGTAATTTTAAT 128349 37 100.0 34 ..................................... AGGTTAATTCTAAAGGCTTTCCACGTTTCCATAC 128420 37 100.0 36 ..................................... TTTCTCTTCACGATTAGACATTTGTTTGTCTTTAGT 128493 37 100.0 35 ..................................... TCTAAGTTGCTTGCGATTTTCGCAAGCTCATCCAT 128565 37 100.0 35 ..................................... TATCAACACCGCTTGGAAGTTTCTCCGCTAATGTT 128637 37 100.0 35 ..................................... ACCGTATTCGGCTATTAATTCTTTAGCGAATTCAG 128709 37 100.0 34 ..................................... AGGAAATCTTGAACATTTGTTGCTTGAGTAATGT 128780 37 100.0 36 ..................................... TTGGTTTGCCCATTCACTATTGTGGTCACGAATGTT 128853 37 100.0 35 ..................................... TCGTTATTTTCAAAAAGCATAGCCAAATAGTCTAT 128925 37 100.0 36 ..................................... GCTAACACTCTCAATTCCTCTGCACGAACCATCCTT 128998 37 100.0 35 ..................................... GCTAAAATTGAAGTAATGAATAATGCAATGATTAA 129070 37 100.0 35 ..................................... GATACTACATCGGCTGAACTCTCTACTGCCATACC 129142 37 100.0 32 ..................................... TTATCAAGAGCTGTACAACTGACCTCTGTTGT 129211 37 100.0 37 ..................................... AAGCCCAGATCACCTGATGTTACTAAACAATATAAAC 129285 37 83.8 0 ......................T........CATT.A | ========== ====== ====== ====== ===================================== ====================================== ================== 24 37 99.3 35 GTCGGAAGACACTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : GTGATAGTCAAATGATGGTCATTGCTTGCCCAATGGCGTGGATTGATAGCGGTCGTAAAGAAGACTTACAACCGTTCCACAACGCTTTAACCCCAGCCGACGAGCTAATCCCTGAAGGCATTACCGTTGCAATTGGTACAGATAACATCTGTGACTATATGGTACCGCTCTGCGAGGGCGATATGTGGCAAGAACTCAGTCTCCTTTCTGCAGGCTGTCGCTTTACTAATCTTGAAGAGATGTCGAACATCGCCTCAATTAACGGACGTAAGGTGTTGGGCTTACTTTAAGATTTATTGGGGATTTTTAAGGAATTAAGACTAGTAAAATCTAAAAACTCTGGTAAAATCCCCTCTGTTTTCGACCGCTTGATAAGTGAATAGAATGTTAAAAATTGTACAATATTTAATCAAATCAAGACCCAACTCTCTAAGTCTCGGAAAAAGTTGGGAAGTGGCTCTCGTAAGCCTTGTGCCACAAGGCTTCAAAATACCACTGCA # Right flank : ATCTAAGCCTCCATTCGGAGGTTTTCTTTTTTGTTGTTGCAAAATCTTAAAGAAATTTCACCGCTTGGTAGCCTTTATCTACCCATCTTTCGCCTATTCCGCTATAATTCCCACAATTTTCCCGCTATATTCCCTTTATCGGGAGATAATTTTCAAAAGGACATAATTATGATGCGTACAAACTATTGTGGCGAATTAAACCGTAGCCACGTTGGACAAAATGTAACTTTAAGTGGCTGGGTACACCGTGTGCGTAACCTTGGTCGTTTTATCTTTATGCAAATCCGCGACCGTGAAGGCGTGGTGCAAGTATTCTTCGATGAGAAAGATGAAGCGTTATTTAAAGTAGCATCTAGCCTGCGTGCAGAAGCCTGCGTGCAAATTCAAGGTGAAGTGATTGCTCGTGATGAGTCGCAAATCAACAAGGATATGGCAACGGGCGAAATCGAAGTGTTAGTGAAAAATGTGTTAGTTTATAACAATGCTGATGTGCTACCACT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACACTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //