Array 1 266450-267637 **** Predicted by CRISPRDetect 2.4 *** >NZ_UDFX01000004.1 Escherichia coli strain VREC0514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 266450 29 100.0 32 ............................. CCTCCCCGCTCACGCCAACGTTAAACGTTATC 266511 29 100.0 32 ............................. ATCCCCCGGTTATTGACCCCAAAACTGGTGAG 266572 29 100.0 32 ............................. GAACGGCGGCTATACGGATTCGACAGGTCAGC 266633 29 100.0 32 ............................. TAACCCGGATAACTGGCAGAGTGCGAATAAAC 266694 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 266755 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 266816 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 266877 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 266938 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 266999 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 267060 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 267121 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 267182 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 267243 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 267304 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 267365 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 267426 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 267487 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 267548 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 267609 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 283139-284448 **** Predicted by CRISPRDetect 2.4 *** >NZ_UDFX01000004.1 Escherichia coli strain VREC0514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 283139 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 283200 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 283261 29 100.0 32 ............................. GGGGATTCGCGTACCTGCGCGCCAGTTCCCCG 283322 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 283383 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 283444 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 283505 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 283566 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 283627 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 283688 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 283749 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 283810 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 283871 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 283932 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 283993 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 284054 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 284115 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 284176 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 284237 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 284298 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 284359 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 284420 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //