Array 1 136773-135894 		**** Predicted by CRISPRDetect 2.4 *** 
>NC_015943.1 Haloarcula hispanica ATCC 33960 chromosome II, complete sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence               	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	==============================	=====================================	==================
    136772	    30	 100.0	    37	..............................	TTGCTTTCTGCCATCAGTCATCGCCTCCGATAACGTT	
    136705	    30	 100.0	    36	..............................	GTCGAGAATCGCGTCTATATCCATCTGATCTGCCTG 	
    136639	    30	 100.0	    36	..............................	GAACGTCATTGCCGGCGGCCGGCGCGGACCTGCAGG 	
    136573	    30	 100.0	    36	..............................	ACCTCGTTGTCGTGATCGGCGGTGGTTCCGCCGAGA 	
    136507	    30	 100.0	    36	..............................	CCTATCTCGTCACAGAACCACGAGAGCCAGATCGGA 	
    136441	    30	 100.0	    35	..............................	GCGAGTAACTCAATACCAATGGCAACAACGCTACT  	
    136376	    30	 100.0	    35	..............................	CTCGGCGGGAGCATGAACAAGACCGCCGCGCTCGT  	
    136311	    30	 100.0	    35	..............................	TACACTGGCGGTCTGGCAACGGAGGAGTAATGCCG  	
    136246	    30	 100.0	    35	..............................	GCCATCGGTGGCTTCGTCGCCGGGTTGCTCTACCC  	
    136181	    30	 100.0	    33	..............................	TGTGACGGCTGTGGTGAGGTGGCGATGGCGCAA    	
    136118	    30	 100.0	    34	..............................	CTCGCCGCACTGGCTGGTCGCCAGACCCATCACA   	
    136054	    30	 100.0	    34	..............................	AAGTACACGAATCTGAACGTTACGGACTGGTCGA   	
    135990	    30	 100.0	    37	..............................	TCGGCACACACAGTCTTACTTCGCGCTGGTCGATAGA	
    135923	    30	  70.0	     0	.......C.....TT.T.AAA..C....A.	|                                    	
==========	======	======	======	==============================	=====================================	==================
        14	    30	  97.9	    35	GTTTCAGACGAACCCTCGTGGGGTTGAAGC	                                     	       

# Left flank :   TGAACGTACTGTTGAACACCCGACGCTCAACCGAAAAGTTAGCTATCAGTACCTGATGCGTCTCGAAGCATACAAACTGAAAAAGCATCTCCTCACCGGAGAAGCATACGACTCGTTCCAACGGTGGTGGTAAAATGTACGTGGTGATGGTATACGATTTGGAAGCGGATCGAACGCAGAAAGCGCTCAAAATTGGTCGGCGATATCTGACTCACGTACAGAACTCAGTTCTTGAAGGCGAAATCTCCGAGGGTGACCTTTCTAACCTCAAGAATGAGATTGATGATTTGCTGAAACCAGGTGAATCGACAATTATCTACGAGCTGTCTTCTGATACACTGCTCAACCGGACAGTCTACGGCGACGATCCAACTGAGGATCAGCGGTTTCTATAGTCGGTTTCCGTCGACCCCCCGGGGGGAAGCACCTTATTGATGGTCGACGGAAGGTCTTTACTGTGACCCGCCGTTAGCAGCCTTATGGCCCGTATATCGGGCATG
# Right flank :  TACGTCAGTGCTCCTGCCGTCCAAAGGTAGTGCTTTCTACGGTCCCGTATAAACCGCACCTCCTCATATACTCAACCGTCGCCGCAGAAAGTATATACAAAACTGGAATCTAAACTTGCATCGTGGTAGCATCCCAAGACCCGCAACGATTCAATTGGCGTTGGAGTTTGTCCTAAACACACGATTGGCTAGAGATCCACGCCTGGACAGATATCATCAACGGAACCGTGACCGACCGGGCGATAAAGAATGTCGCCCTCGTAGAGATACGCCTACAAGTCCTGTGGCATCACTGCTTTCAAGGATAATAATCTGTGAGTTCTTCGATGAGTGAATGTCTCTGGGTTCTGTGTAAGCCAGAGCAAAGAGCCATTCTGGCATTTATTAGTATATATTTATTATCCGTGATCTCCTCGTATCTCTTTGATTGGGTGTGGATCGATGAAGACACTGAAACATCATCACCGTGGGCAGATTGGTGGGCTATCGTATTATGGGCA

# Questionable array : NO	 Score: 6.16
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTCAGACGAACCCTCGTGGGGTTGAAGC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [7,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-5.00,-6.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [9-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.28   Confidence: HIGH] 

# Array family : I-B [Matched known repeat from this family],   
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