Array 1 3953-4219 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTEU02000008.1 Hafnia alvei strain DSM 30099 contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3953 28 100.0 32 ............................ ATCACTGAGACGGTGAGGAATCGAATGCTCTA 4013 28 100.0 32 ............................ GTGATGCTTGGAGTGCGATGAAGCCAAGGATT 4073 28 100.0 32 ............................ ATCAGGACCTTGTGTTTTGCAGCAAGGCTTTT 4133 28 100.0 32 ............................ ATCAGGTACCACCGGTTCCATGCTATTACCCC 4193 27 89.3 0 ....................-.C.T... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCGGTGCCGTAGTGGGAACGCTACTGGCGCTTGCTTCTGCACGAAGCGAATGGCCGATGGTAAGCTCCATGTTCCTGTGTATCTTTGCTGCCATGATGCTGTTCCTGTATGCCTCAAGACCTGCTAAGGCCAGCAACCGTATCGATCCTGCCTAAGCGCTTTGGCTCCCCGCTGATAAAAATAGGCGGGGAGGCCATTAGTAATCGCCGCTCTTTATTTGGCATATGCAACAGACATATGTTTGCCTGTTCGCAGAGCGCTAGCAATGCAGGGCTCAGATGAGCTGAAAGCGTTAATCTGCCCCAACTTTCCTGTGGGATTCGAACGCCACTCTCTAGCGATTCCCCTAAATACGATAAGCTTCCACGAACCCTTTTTTTGCGCCTACTTATAACCCTTTGATTTTATGTGGGAGTTTATCACGAAGATAAAAAAGGGTAATGCAGTGAAAAATGAGTTACAGATCTGATTATTCGAAGCTTTATACGAATATTCTACT # Right flank : AAACAAAACGGCATTTCTGCATACTTTTCTATTAATACCCATCATCGTAAACGTCTGTCATACAAATAAAAGCAAACGCTTTCCTAAATTATAAATTCCTATGAAAACATAATCATGCTAACTATATTTTTCGTGCGATTTTGTGATGGGTTTTTCATTTCGTTAACAGCATTTTTTACCAAAACAGATAGAAACCCTTAAAAACAAAGAAAACATTAAAACTATTAATTATTAACCTATCAATTAATATTGTTTTAAAACAAATGATTAGCTAATTTCTTTGATCGAGATTCAGGGAGTTATTGTATTTCTTATGTAAATTGAAAAATACGACAAAGTAATTAAAATGAAACAAAAATGGTTGTGGTAATAAAGAGAAAAGTATACATATAACCGCAGCAGCAGAAGTTCCTCCCATCGTGGTATTTCTGAAGAAAAAATGGGGTAGTGCCAGATTGATCGTTGTTTCGGTCGTTTTTACTTCGGTGTTACCGAAATGT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 118280-119327 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTEU02000013.1 Hafnia alvei strain DSM 30099 contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 118280 28 100.0 32 ............................ AGCCTCGAAGCTCTTTGTTACATCGGCTCTCA 118340 28 100.0 32 ............................ GTGCTGGCAATGTTAACCAAGCATGCGAGCAA 118400 28 100.0 32 ............................ AATTCCATCGGCAGACTTGATGGTCGAACCGT 118460 28 100.0 32 ............................ TACGACGATATGTTGTCAGCGGCGACGCAAGG 118520 28 100.0 32 ............................ ATGATCACAAAAGGCGATATTGTAGAAATTGC 118580 28 100.0 32 ............................ ATATTTACCTTGATATTCGCTCTCAAAATAAT 118640 28 100.0 32 ............................ ACTATGGGCGCTTGTCGTTACTTGGTCTTTCT 118700 28 100.0 32 ............................ TACCGTTGATTACCTGTCAACAAAAGACACGT 118760 28 100.0 32 ............................ CATCGCAGACATACCCGATTAACACACTGGAG 118820 28 100.0 32 ............................ CTTCAATCGCCGGGTAACAGTTCGCCGCCACA 118880 28 100.0 32 ............................ TGAGAAATCAACATTCCGTCATCATCATTACA 118940 28 100.0 32 ............................ GCGCTCAAGCTGGAAATCTTCCCCGTTAAAGT 119000 28 100.0 32 ............................ CGTTAATCATTGTTTCGGATTGTCTGATTCGT 119060 28 100.0 32 ............................ CGTATGCGTTATAAGCGAGATGGGCTGCGTAA 119120 28 100.0 32 ............................ GTTGCGGGATTAATCATCGGTGTTGATACGTA 119180 28 100.0 32 ............................ ATCATTATTTGCGCTTCATTGCTATTGTCATC 119240 28 100.0 32 ............................ GCCGGGCAATTTAACGTTAATGCTTACAGAGC 119300 28 92.9 0 .....................C..C... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTGACTTTCACTGGCAAAGTGCGCAACCACAATCTTGGTGATAACGTTAGCGCGTTAACCTTAGAGCACTATCCTGGGATGACGGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGCTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCACTGGCGCCATGTATCCCGGAGATGAAATTGTATTCGTTGGAGTGACCAGCGCACATCGCAGCATGGCCTTTGATGCCGCCGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCGTTCTGGAAGCGAGAAGCCACCGAGCAGGGCGACCGCTGGGTCGACGCCCGCGACAGTGACCAACAAGCGGCAAAACGCTGGTAAGTTCTTTCAACCCTTTTTTCTGCCCTCACGATAACTCATTGATTTTTCACTCCTCCAATGAACCGTAAGAAAAAAGGGTTAAATTCCCAAAAATGAGCTACCGATCTGATTAATCGACGCTTTCTGCGAATATCCTACA # Right flank : ACTCACCATGGTTTGTGTTTAATTTTATTCGCTATGTATCAACGTTAAGCCGTTAAGCTGGTTATATTCCAAAATTAAGAATTACTGCATCGTTAAGTGTGATTTAAGTTAAATTTCCCTAATGTGTTGGGTGGTATTTTTGCATTGTCTCCAACGATGGAATAACGATGTGAACAGCAATGATTTCTCTCCCTCTGATCTGAAAACTATTCTGCATTCAAAACGCTCAAATATTTATTACCTCCAATATTGCCGAGTATTAGTTAACGGAGGTCGAGTGGAATATGTGACGGATGAAGGGCGCGAATCACTGTATTGGAATATTCCCATCGCGAATACCACCGTGGTTATGTTGGGCACCGGAACCTCGGTCACTCAGGCCGCAATGCGAGAGTTTGCCCGTGCAGGCGTATTGGTTGGTTTTTGCGGCGGAGGGGGAACCCCATTATTTGCGGCGAATGAGGTTGAGGTAGATGTCTCGTGGTTAGCTCCGCAAAGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //