Array 1 550237-549660 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_PNHB01000001.1 Gardnerella vaginalis strain UMB0170 .16933_8_28.1, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
    550236	    28	 100.0	    33	............................	ATTTATAGCATCAAACGACATCTTAAGACTCTT	
    550175	    28	 100.0	    33	............................	TTTTTGCTTTGCCTTTGCTTGCTCCGGAAATCA	
    550114	    28	 100.0	    33	............................	TCATGCAGAGGAGAAACGAAGGCAGGCAGCTTC	
    550053	    28	 100.0	    33	............................	CCACCCAGCAATGGAGTAGCATTATATCAAATA	
    549992	    28	 100.0	    33	............................	CAAATTATGTGCTCAGACTATAAAGACATTTGC	
    549931	    28	 100.0	    33	............................	CAAATTATGTGCTCAGACTATAAAGACATTTGC	
    549870	    28	 100.0	    33	............................	AACAGTGGAGTAGTATTGTATCAAATAATTTGA	
    549809	    28	 100.0	    33	............................	CAGTGGCGATGCGCAAAGGGAATTTTATAGCAT	
    549748	    28	 100.0	    33	............................	CTCGTCGGTGTGTTTAAGCTCCGTAAGCATTTT	
    549687	    28	  78.6	     0	...............T.T..T.CA...A	|                                	
==========	======	======	======	============================	=================================	==================
        10	    28	  97.9	    33	GTCTTTCCCGCATACGCGGGGGTGATCC	                                 	       

# Left flank :   CCTTGGTATGAAACTAGAAAGTGGCAGAGAAAGAGACAAACACGATAGCGCTGAAATTATTCGCAGGCTCAAACTCACATCAGTAAAACAAGCACAAGATACTCTCCACAGTTACGGATTCCATACAGACTTATCACTCTTGCTCGAATCCTTTGAAGAAGCCTACGGCATGAACTGGCTCGCTGACTACATGGCACAGCACATGAATGAACTCGACGAACTGTAAAAACAAAAATCTTATTTTGTCTCGACTTAGTAAACAAGTCGAGGCAATTTTCTTTTATCCCTATAAAATTTTTGCTCGTGTTTTGCTTGGCTCTGTGGTTTCTTGTGCGCGTGATTTTCCGTGGCACTGTTTTCATAAAAAGGTTCTAGGGTTCTTCAAAAATTTTTCTTCTCTTTTATGAAAAATTCTTCTAAGAATTTTTCATAAAATCACTCCACACTTTAACCCATTTTTTCTTAAAACTATCCACAGATTTTTCTTCAGAAACATAAAA
# Right flank :  CAAAAGTGCGTTTATCTAAAAAGAAAAAGGTTAGCTTGTTGTTATTGTTTAGCTAGATTTATCATACGTAATACGCGCAAGTATCAAAACTGTTTCCTTAACGCAACAATTTTGATACACTTGCGCACTATATATATAAATTAGATTTAATACACAAACAAAGTTGTGCAATAAAGCAATATTTGATATCATGAGTTGTAGGAGTCTTCCTGCGTTGAAAGTCGGCTTCATGCCGTCGGTGACTTTCTCATCTTAGGCGTCGTGTGGGCTCCTTTATTTTTGGTTTTCAGCCAGCAATCAATATTTAGAGGCTTGCGCTTTGTATGGTAATTTTCCGAATTTTTATAATGCTCTGTATCATACAGGTCAAGCACAAGAGGAATTTTATTATTATCTAGAAGTAAATTATAGAAATATAAATCACCCTTTTCAAAGACTCTCTGAACTGCCCACAATGCGTAGTCGGTTATTGCTAATAACGGCTCATTTGAGTACGGTTG

# Questionable array : NO	 Score: 6.16
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTTTCCCGCATACGCGGGGGTGATCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [7,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-9.80,-9.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [6-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,4.91   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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