Array 1 173106-174171 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAADZL010000065.1 Salmonella bongori serovar 66:z39:- strain 92-0014 NODE_4_length_413848_cov_85.1771, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 173106 29 100.0 32 ............................. TAAATCTATTGCTATTAATAGTGACTAATTCC 173167 29 100.0 32 ............................. CATCAGAAGATAAATCACTAAAAGGTTGATTT 173228 29 100.0 32 ............................. CCTTTTCGCTGGCTGCCATTTCCTGGAGATCG 173289 29 100.0 32 ............................. TGCAACAATCATGCTTTTCACCAGTTTTTCAG 173350 29 100.0 32 ............................. GGCATCACCAGCACACGCTAACGTTTCGGAAA 173411 29 100.0 32 ............................. CGAGGACGAAATACGCCATGAGTCTTGGATCG 173472 29 100.0 32 ............................. GGTTAAATATCTTGAAAAAGAGGTTGATTTCC 173533 29 100.0 32 ............................. TTGAGTTGCTTCTGAAATTGATTTGTCAGAAG 173594 29 100.0 32 ............................. ATCCAGGTTGGCGAACACTGTAAAACCTTGCT 173655 29 100.0 32 ............................. TACTGGTATGATTGGTTTATCAGGGTCGTCAA 173716 29 100.0 32 ............................. ATTAGCGGGCGCCCGGTGGATATCAGCTTTGA 173777 29 100.0 32 ............................. GCATACGTTGATAATGCAGTAGCAAATATAAA 173838 29 96.6 32 ............................T AAATGAAAGTAGATGAAATTAATTTAAACAGG 173899 29 100.0 32 ............................. CTTAAAACAGGTGTGGTGCCGTAGGCATTTGC 173960 29 100.0 32 ............................. TCGGTATTGGCAGCTTCCCAATTCCTGCGCGA 174021 29 100.0 32 ............................. GCGTGTGGTTAATTGAGTAGTACCATTTTTAA 174082 29 100.0 32 ............................. TAATCGCTTCCAGCAACTCACCCGCCTGCCAG 174143 29 93.1 0 ....................A.....T.. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGAATGAAATCAAGCATCCGGTTGGACGAGTACGTGATATTGAGGCGCTGGATGAGTTGTTAGCCACGTTGAGCGACGATAAACCGAGAGTGATTGCTTTGCAGCCCATCAGCCAAAAAGAAGACGCGACGCGTCTGTGTATTGATACGTGCATTGCGCGTAACTGGCGACTGTCTATGCAAACGCATAAGTATTTAAATATCGCCTGATATGCTGTCCGTTCTACGGATGGCCTGTCGTCGTGTGTAATTTACCTATCATCTTGCGTTCGCTATTTCTCCAAAAAATTCGAGGAATGTATAAATTAGCTGAATAATTTTCCATAGCGAGGCATGGATCACACTATTTTGGTGAGTTTAAAGAAAAAATCGCTCACTGAATTTTTTTGTATCAAAATCAGCTGATTAGATGTTCTTTAAGAATTTAAATTTGTTGCAATTATGTTGGTAGAATGTGGCGTTGATAAAAAACACTGAATAAACAATTAGGTATATTTAGT # Right flank : GTTCCATAACCATAATCTGCGTACCAGTAATCGTTCGGACCAAACAGTAAAGTAAAAAGAACCGTGTTTTGTGGGGGATAAAGGAGAGGGTGATGGCGTTAACGATTAAGGTATTGCTCGAAAATCATAAAGCCGCTGGTGTGGATAACGCTTTGAAGGCCAGGCCAGGATTAAGCTTATTAGTTCAGGATGAATCTACCTCGATATTATTCGATACCGGACCTGACGACAGTTTTATACAAAATGCGTCGACAATGAGGATCGACCTGTCTGATATATCTGCGGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAATAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGGTGTACGCGCGTGACCCTATGCCAATTAGCGACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 190168-191052 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAADZL010000065.1 Salmonella bongori serovar 66:z39:- strain 92-0014 NODE_4_length_413848_cov_85.1771, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 190168 29 100.0 32 ............................. CAGATTCATCATTGGTTATATTACCTGCAAAT 190229 29 100.0 32 ............................. GTGATTAGAGTTCTTAAAGAGAGCAAATTACT 190290 29 100.0 32 ............................. AGCGGCGATATTGATTCCCCTGACGCCGACTA 190351 29 100.0 32 ............................. ACGAATTTCCCTGAATTATCAGAGATTTGGGT 190412 29 100.0 32 ............................. CTCCGGCACCAAATCGGCGCGCTGACGTAAGT 190473 29 100.0 32 ............................. AAAAGAGACAGCAGATTTTGTCGGCACTTGAA 190534 29 100.0 32 ............................. TGTAAAAAAGTTGGAATAACTGGCCTGCGTTA 190595 29 100.0 32 ............................. TAGACCAGATTAATAAATTAATGCAGGCCGGA 190656 29 100.0 32 ............................. CTAATTCATTTGGTACAGAACAGATTAGCCAT 190717 29 100.0 32 ............................. ATCGAAAAAGTAATGGTAAGAGATGTTATTGT 190778 29 100.0 33 ............................. TTTACTTCCGCGAAAAAGAAGAATTGCCTAATT 190840 29 100.0 32 ............................. GTGGCGTTACCGTAAACGTCCCCTCATTTATT 190901 29 100.0 32 ............................. ACCTACAGCCACTATCTAACGAAGAGCGTGAG 190962 29 96.6 32 ...................A......... TGGTTGGCCTTCAGTATGCCATCAAGATAAAA 191023 29 86.2 0 .....................C.TT..T. | T [191048] ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCCGCCGGAGAAATTGAACCGCCTCAACCCGCGCCGGATATGCTGCCGCCCGCGATACCGGAGCCGGAATCTCTGGGTGACAGTGGGCATCGGGGGCATAGTTAATGAGCATGATGGTGGTGGCAACTGAAAACGTACCGCCGCGTCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGCGTTTATGTTGGCGATACCTCAAAACGCATTCGGGAGATGATCTGGCAACAGATAACACAATTGGGTGGAGAGGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCTGGTTTTGAATTTCAGACTTGGGGGGAAAACCGCCGTATTCCGGTAGATGTAGATGGGCTCAGGCTGGTTTCCTTTCTTCCTATTCAAAATCAATAAGTTGAAGGCTCTTTAATAATAAGGAATTGTTGCTTTAGCGTTGGTAGGTTGTTATTAAGCCAAAAAACGTTTTTAGAACAATTACATAGATTTAGA # Right flank : GGATGTTCTGACACGTGGAGTGGTGAAATTGACTATCTGTCAATAAGACAACACGATGGACCATAATCATGGCTGCCGTCCGTATTGCTGAAATATCTCTTTATATGCTGCGGGGCGCAGATACGTCCCGCGCCAGTATGACTATTTGGGCTGGATGGGCGCCGCCTTTGCCAACTCTTTTACCAGTGGCAGCATTATCCGCACCACGTCGCGGCTACGGCGCTCAATTCGCCCAGGTAAGGCTTTATCGATATGCTGTTGATTATCCAGCCGTACATTGTGCCAGCTATTGCCATCCGGAAAAGAGGCATTTTTCGCTCTTTGCTGGTATCCATCTTTTTTACCCAGACTCCAGTTCGTCGCTTCAACGGAAAGCACAGAAATCCCGGCGTCATCGAAAACTTCCGCATCATTACAGCAGCCAGTTCCTTTAGGATACGCCGGATTGAGTCCCGGATTCGTGCTGGCGGCGATACCATGTTGACGCGCGATGGCTAATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //