Array 1 1037152-1033123 **** Predicted by CRISPRDetect 2.4 *** >NC_013790.1 Methanobrevibacter ruminantium M1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1037151 30 100.0 33 .............................. CCTGAAGCTGTTAGGGTATTTCGCATCAACATA 1037088 30 100.0 36 .............................. ATAGAAAATATTACTAGTTGCAGTGTTTTCTTGTTT 1037022 30 100.0 39 .............................. TATCTTCAAAGGTTTCCTCATCTTCAAAGTAAGGTTCGG 1036953 30 100.0 35 .............................. ATAAACCTAGAGGACTTAATTGTAGAGACTGAACA 1036888 30 100.0 36 .............................. TAAAAAAAGGCATAAAAATAAGATATCAATAAATTT 1036822 30 100.0 37 .............................. CTTGAAAAGGTGTTATACTTGGCTTGAACTTGTTTCA 1036755 30 100.0 37 .............................. TCAATACAATCATTAACAATTTCTTCAATCCTAAATA 1036688 30 100.0 35 .............................. GTAAGCGATGGAAATTACATCGTTGGATTTGAATT 1036623 30 100.0 35 .............................. TTAAAATTAGGATTCAATTATTATGCTCCAGAGGA 1036558 30 100.0 37 .............................. CAAAATCCTATTCTTATATTTGGGTGAGAGAATATGG 1036491 30 100.0 35 .............................. ATAGGGGAGGAAATAATCTATTGGAGGACTTGCAC 1036426 30 100.0 34 .............................. ATATCAACAATTGCAACTTCAACTATACACACAG 1036362 30 100.0 34 .............................. TTTACTAAAAGTTTGCCCCCCCCATTTACTAAAG T,G,C [1036332,1036339,1036348] 1036295 30 100.0 36 .............................. CTTTCTTCAGTAGTCTTATTCCCTATAAATTTACAA 1036229 30 100.0 36 .............................. TTGTCCAAGTTGAAGATTTGGAACTGGGCTTCTGCA 1036163 30 100.0 36 .............................. ATGAATTCGTATTAGATAATTTCGGTGTTATTGCGA 1036097 30 100.0 36 .............................. ATGGTTGATGATGAAAGCGGTACAGGACAACGTAAA 1036031 30 100.0 36 .............................. CAAAGAGTCAGTATCATTGAAGTAGCCAACCTTGGA 1035965 30 100.0 35 .............................. TCAGTAGTTTCTGCTAATCTGAAGCGATGGTAAGG 1035900 30 100.0 36 .............................. ATCCAATAATGATTTTAATTTCTTAATTTCATTGTC 1035834 30 100.0 36 .............................. TAGTATTGCTTGAATGTGAATTTAGGCACTCCTCGC 1035768 30 100.0 36 .............................. TTAATAACTGTTTTGTACATTTTTTATCAACTCTGG 1035702 30 100.0 35 .............................. ACGTTCTAAACTAAAAGAATGTATAAAATCATCAA 1035637 30 100.0 36 .............................. TCTTCCAATTCATAATTGTTGACATGATGTCTTTTC 1035571 30 100.0 35 .............................. AAGATGTTTCCGACACCATCGGCAGTTCCAAGTGC 1035506 30 100.0 37 .............................. TTACCAACTGTGCTTCAGAAGAATGTTACTCTCGTAA 1035439 30 100.0 34 .............................. TTTTTAACGAACCAATCGTAGATGGAAATGATGA 1035375 30 100.0 36 .............................. TTATTATAAATCTGAAAATGCTGATAAGTTTGGAGC 1035309 30 100.0 34 .............................. CTACTCATTGTCCTTTGTGCATCGAATTCTACTG 1035245 30 100.0 36 .............................. TAGGACTTAAGACACCACTTAAGGACAAGGTGACAT 1035179 30 100.0 34 .............................. TCGATTTCACACAATTATTCCACGAAATCGAAGA 1035115 30 100.0 36 .............................. TACATTGTTTCGGATATGAGGGTCTTTGATATGTAT 1035049 30 100.0 35 .............................. TAATTGTATTCTAGGAGCAAGTCCAGTTCTGCAAG 1034984 30 100.0 36 .............................. TACAATAGCAGACTATGTCTTCCTTGAAAGGTTCTA 1034918 30 100.0 34 .............................. ATATGAAGGAGCAGGATTAGCATTAACTAGCACA 1034854 30 100.0 35 .............................. TTTTTAACTGTTTTAGTATTATCCATAAGGTCATT 1034789 30 100.0 37 .............................. CTATTACTGATATCAGCGATTATTTCTTTGTAAGCTG 1034722 30 100.0 37 .............................. TTGTATACATTGCTTGTATCATAAATTATATGTCCGT 1034655 30 100.0 36 .............................. TTCAACACAATGATACTAATCATCGGAACATACATA 1034589 30 100.0 36 .............................. AGCATCTTCAAAGAACTCTCCAAACATCGCTTTCTG 1034523 30 100.0 35 .............................. TTAAAATCAATTTCCACATCATATAACTCAGCACC 1034458 30 100.0 34 .............................. TAACACTAGTCATAGGTGCCAATACTGGACTAAG 1034394 30 100.0 36 .............................. TAAACTTATCAGGTTCTTTATTAAACAATAATTTAT 1034328 30 100.0 35 .............................. ATGCTCAATATCATCCACGATAGTGATAGTCAAAC 1034263 30 100.0 34 .............................. GTTACCCAGTTACCAAGATTTAATTCTACTTTGT 1034199 30 100.0 36 .............................. AGATGACTGTCCGATGTGGTTTGACTCTACCAAATA 1034133 30 100.0 35 .............................. AACGGAATCATACAATATGGGGCAGACATAGATGA 1034068 30 100.0 35 .............................. AACGGAATCATACAATATGGGGCAGACATAGATGA 1034003 30 100.0 32 .............................. ACTACCGAGTCTTTTTTTTATGTTTTTTTTGG 1033941 30 100.0 35 .............................. TTGCAATATCAAGTTACCGATAAAGGTTAGGATTA 1033876 30 100.0 37 .............................. TTAGCAGATAAAGTGCAACTTAATCCATCAGCAGAAT 1033809 30 100.0 36 .............................. ATAACCAGTTATGATAGAATAATTCTCGTAGATTCT 1033743 30 100.0 37 .............................. CTCACTATTTAATCCATATTGAGTTGTACTGTCTCTA 1033676 30 100.0 35 .............................. TTTTAAACTTGTAGAATTAGTAAGGGGGAATGAAT 1033611 30 100.0 33 .............................. CAAGAAAGAGTCCATTATGGTGTCAAAAGTGTG 1033548 30 100.0 36 .............................. CAATATGCACAGAAGATATTATTGGAGAATGGTTTT 1033482 30 100.0 37 .............................. CTACTCCAACAGTAGTGGTAATTTCATATTATTACCT 1033415 30 100.0 37 .............................. TTACCAACTGTGCTTCAGAAGAATGTTACTCTCGTAA 1033348 30 100.0 34 .............................. TTTTTAACGAACCAATCGTAGATGGAAATGATGA 1033284 30 100.0 36 .............................. TTATTATAAATCTGAAAATGCTGATAAGTTTGGAGC 1033218 30 100.0 36 .............................. TTCAAGAATAATATCAATATTGATTCAGATATTGAT 1033152 30 96.7 0 .........................A.... | ========== ====== ====== ====== ============================== ======================================= ================== 62 30 99.9 36 GTTAAAATCAGACCATTTTGGGATTGAAAT # Left flank : TTAATTTTCAACAGTCAGAAGATCGTTAAAGTCGTGATATGATTTTATATTGAGGCATTCTTGTTTGATTAGGATGGATTCTCATCCGATGCAGAATATGCTTTCAGAGGTGTTTTCCTTTCCACAGCTAGAACAAAAGACCATATTGTTAACCCTTTTATGTTTTGTTGTTAATAGTTTGTGGTTTGGTTTTTATATAATTTTATGTTAAGAATTCTGTCGATCCAAGTGTTTTTATAATTAAACTTAGTTAAGTAATTTTTAAAAATTGTTTTAAATAACTTTTAGAAACTTGTTAATTATCTAAATGAAAAATATCATTATAAAAATAATTTGAATAAAATTTAAATAAGAATATGTTATTATTTAATAATTTTAAGAGATTTAAGTTAAATGTTGATTGTTTTAAATAAATTCTTTTTTACCATTCGAAAATTTTAAATTAAAAAATGGACAAATATTAATGTGTAAAAGGGGTATTTAGGCGAAAATTCTCGCCT # Right flank : TACAAAATAACATCATCCACTGATGCCTTTTCAACCCCTAAAACATTTCTTGTTAAAGATTCTTCCATCATTAATTGATAAATAATAACAGAATCTTCATCTTCTTCAATAATATTCAATAAACCATCAGTTACTGCTTTATATTCACTATTTGTCAATTCTCCTTCAAATACTGAATTTTGTATCCAAAAAAGATGTTGTCTAAGGAAACTTTTTACCTTATTTACTCTTTCTACTTTAATGTCATAAACTATTATAACATACATACTTACCACCAAATAACAAATGGATCATACTCTTTCATACCAAAAACATGTTTTTTAAGTTTATAAGCTTCTAGTCTGATTAACCTTTGATAAGAAACTTTTCTGCCTAAATCTTTATGTTTGATGGTAGTCTCAAGTCTTTTATTATATTCCTTAACAAAAGTGGCTCTTCCCTTATCATTTAAAAGACAGCAGTTAAGATCTTGATTAAAGTCCTTTTCAGTTATCATTTTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCATTTTGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 2 1553795-1552963 **** Predicted by CRISPRDetect 2.4 *** >NC_013790.1 Methanobrevibacter ruminantium M1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1553794 37 100.0 35 ..................................... ATTTGGTCATTCTGCTAATAGTTGCTTCGTAGTCG 1553722 37 100.0 35 ..................................... ATCATATTCCACCATTCCTATGTGTCTAGCAATGT 1553650 37 100.0 36 ..................................... AGATTTTTCATTAGTCATAAGAAATTCCTCCGTTCT 1553577 37 100.0 36 ..................................... TTCTCCCATTTATCTGAGAACTCTTTATATTTCATA 1553504 37 100.0 36 ..................................... GTTTATAGTTTTTTAGGGTTTTTAACATACCCTTAT 1553431 37 100.0 35 ..................................... CTTCTGCGCGTCATTTGTTATTTCATTCCTATTGA 1553359 37 100.0 35 ..................................... ATCTTTAAAGGCTTTGGCCTTTAACTCTTTATAGT 1553287 37 100.0 35 ..................................... AAATTTCTCCGATTTTAACACCTGTGTAGTAGTTT 1553215 37 97.3 35 ........................T............ CTACCCTCTCTATCCATAAGGATTTATCTATATGT 1553143 37 91.9 35 ........................T....G......T CTTTCTGGCCTCCTGCTTATAAGATTTGGAAAAAA 1553071 37 91.9 35 ........................T.......A.A.. ACCTTCTTTGGAATCTGTTTCCTTTGTTTAATTTT 1552999 37 70.3 0 ......TTGAT..T....AC.......T......T.T | ========== ====== ====== ====== ===================================== ==================================== ================== 12 37 95.9 35 ATTGCAAAAGCTAATCTACTAAAACAAGGATTGCGAC # Left flank : ATGAGAGGGCTAGACGACTTTTGATTGCAAAAATATTGGATAAATTAAATAGCAAGATAATGTTTCATAGTAAGAATATTAGTTATTCAGATATTATTTTATATCAAGGCAAGCTTATGGCTGATTATTTAACAAATGGCGTACCATATGAAGGGTTTTCTCTTAGATGGTGAATAATCCAGAAAGCCATTTTGTGCAAACCTATCAATTTTTAATGAATTTTTATTTTTTCACTATTTTTTCCATATTTTTTTATTTCTCTTTTTTTCCTTATTTTTTTAATTAATTATATCTTAACCTTTATTTTTTTGATATTTTGATTTTAAACATTAATATAATTTATTCAATGATTAATATTAGGTAATATTAATAGAAAACTTTTTATTTTAATTGTGCAAATATATATAAATAAGGGTTAAGTTTTTAGATTTGCACAAAAACCCTATAAAAAGAAGCAATATCCATATGTTTTTGATATGTTTAGAGGAAATTTTTGGACT # Right flank : GTTTATCCCTTCAGTTTTCTTATAAATAAAATTGCAATGATTCTTCAGCCTTTGTAGAAACCCTTTCTAAAAGATTTGTATGTGTCTGTAAATATTTTATAACACATCTTTTAGCTTGGTTTTTTCATTACGCAATCGATCACTTCATGAAAAGTTTACACCAGAAAATTTTCTCTTAACTACAGAATAACACTTTCCACATTCATTCTTCTGCCATAGACTTTAGGTCTGAAGACTGTTGCACTGTTCGAACGATAATGGCCATGCTCTTGTTTTAAGTGGTATTTGGTCTAAAGCTAAACTATTTTGTTTATGCGTTTCCTTAGTTCTTCAAAGTCATAAGCACTATAAATAGTAATGCGGTTTATATTTTTTCATTTGCCTTACGGCTGCAAAAGCAAATTGCAATCATGTTTTGGACATCTAGAGACTCCATAATGAAGGATCATTCATTGTACACATCGATAGCAATATGATTTACTGTATCCTTTTTCTTTTTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAAAAGCTAATCTACTAAAACAAGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 1574678-1571892 **** Predicted by CRISPRDetect 2.4 *** >NC_013790.1 Methanobrevibacter ruminantium M1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1574677 36 97.3 37 ............................-........ TCGCTTACGATGCCGTTTAAATCACAACTCATGTCAT 1574604 37 100.0 36 ..................................... GTGCTTTTAAGTCATAACTAACTATAAGTCCATTAA 1574531 37 100.0 35 ..................................... AAATCTATCTATAGTTATTTGAGTTTTAATATAAT 1574459 37 100.0 36 ..................................... TTCATTATAGCGAACAATTACATCTAAAGTGTCTTT 1574386 37 100.0 34 ..................................... TTGTCTATATGCCTGATTGCTTAATCTGTATTTC 1574315 37 100.0 35 ..................................... GCTCGATGTTTTACTTGTTTTAAGAGTTCTAAGGT 1574243 37 100.0 34 ..................................... TTAGAAATCCTCCCTAAAGTGACAACCATACTCT 1574172 37 100.0 37 ..................................... GCTTTTTATAACTCTCAAGTTTTTATAACTTGTATAT 1574098 37 100.0 37 ..................................... ATTTTATCACCAATAAAAAATATAAAAGTTTTTTGAT 1574024 37 100.0 34 ..................................... CGAAGTATGCTTGTCTTGTTACCCCTTGAACTTT 1573953 37 100.0 34 ..................................... CTCTTCTTTGATTCCCTCGCGACTTCCATATGGG 1573882 37 100.0 36 ..................................... AAGACTTTAAGCATATCTTTGTAAAATGTATTTTTG 1573809 37 100.0 36 ..................................... TTTGTCAAGGAAATTTCTTTTTTGTGTCACAATAAT 1573736 37 100.0 35 ..................................... TAAATGATAATGGTATGGCATCATTACATTTTGAT 1573664 37 100.0 35 ..................................... TCTTCTTAAGAGTTGGCTTCTTAAGTCAAATTCAT 1573592 37 100.0 34 ..................................... ACATAAATAATCACCTATATAATTTTCATTAATT 1573521 37 100.0 35 ..................................... AAGTGTCGTATTGGCTTAAATCGTTCAATTTTGCC 1573449 37 100.0 34 ..................................... AATTTCTTTTTGTCATATTTGTCTATAATGATAT 1573378 37 100.0 35 ..................................... AATTTCTTTTTGTCTATATTTGTCTATAATGATAT 1573306 37 100.0 35 ..................................... ATAACATATTTAACACCTCAATTTATCTATTATCT 1573234 37 100.0 35 ..................................... AGTCGTTACACTCTTTATCGTATACTGAATGATTG 1573162 37 100.0 35 ..................................... ACACCTTGAACCTTTCTTAAGGTATAAAGTTTGTC 1573090 37 100.0 36 ..................................... TCTTTTAAATTGAAAAGATTTACAATAGGTATTAGG 1573017 37 100.0 37 ..................................... GCACCCGCGACGGACACACGAGAGACGGAAGAACCGA 1572943 37 100.0 35 ..................................... AGAAAAAAATCTAATAATATCAAAACTAATCTTAT 1572871 37 100.0 39 ..................................... AGCTTAAGCATATATTCTTTAGTTTGTTTATTAGCTCTT 1572795 37 100.0 35 ..................................... AAACTCTTGCTATAGCTAAACTCTCTTTTAACTCT 1572723 37 100.0 36 ..................................... ATTCGTCCACTTTGTCTTTGGTATCATTCAATAAGG 1572650 37 100.0 36 ..................................... TTAGCCCTAACTTTTGTAACTTTCTCAACTACCATA 1572577 37 100.0 35 ..................................... TGCATGAATTTCAACAAGTGTTTCAATGATTTCAT 1572505 37 100.0 36 ..................................... TTACTGTTTCTTCAGTACTGTTGTCTCTGTTATTGT 1572432 37 100.0 35 ..................................... ATAAATTTTATTTATTCTATAAGAAATATACCTAC 1572360 37 100.0 35 ..................................... TTTCTTCAAGAACAACATCAGTCCAAAAATGAAAT 1572288 37 97.3 35 ...........................T......... AGTGTCTTAATCTCCATTTCTGTTTCCTTGTTAAT 1572216 37 100.0 36 ..................................... TTTTTCCCTTATTGTGAGTTTGTTAAGGGAATCAGA 1572143 37 94.6 36 .................TT.................. TCCTTTTTTTGTTCCATAATTTTTAAGTGTCTTTTT 1572070 37 97.3 34 ....................................T TGCCTTCTTGTTTTTCGAGAAAAATTGTTACTGA 1571999 37 89.2 34 ..A..............TT.................T GCAAAAGTTACAATTTTACTGTCATGGTATACAA 1571928 37 89.2 0 ..................T............A.CA.. | ========== ====== ====== ====== ===================================== ======================================= ================== 39 37 99.1 35 ATTGCAAAAAGTAATCTACTAAAACAAGGATTGTGAC # Left flank : AGTATATAAAGGTTTGTTTTTTTAGAAGAAAAATTTATGAAATAAAATAAATAATTATAAAAGGTTTATTATAAAAGAAATAGTTTTAATATATCATTTTTTATAAAATAAGTCTTAAAAAATAATAATTTAGTAAATTATATTAATACATCTGTTTTAGCCGGTATAAAGAAAATTCAAAAAAATCCATTTTGTGCAAACCTATAGGATTTTAACAAATTTCCAATTTTCCGCTAATTTTTTAATATTTTTTTATTTCTCATTTTTTCCTTATTTTTTTAATTAATTACATATTGTTTAGTATTTTTTAAAATATTTAATTTTAAACATTGATATAATTGATTCAATGATTATTATTTGTTAATATTGATAGAAAACTTTTTATTTAAATTGTGCAAATATATATAAATAAGGGTTAAGTTTTTAGATTTGCACAAAAACACTATAAAAAGAAGCAATTTCCATTATTTTTTCATACATTTTGAGAAAATTTTTGGACT # Right flank : AAAAAACCAAACCTTTAAATATTATTATAAACTTATACTATGTAATTGAACACCAAAAGATACATCACAAAAGACTTGTACCATACATTAAATATTTTGTTCAATTCTATTTTTTGTATAATCGCAGTTGAACTAGATTAAATTATAAGATACCATGAATGAAACCACTTCAAATGAACTAATACATGCACGCAGACTTTATATGAAAAAGAATATGAAAGAAGCAGAAACTAATTTTTTAAAAGTTTTCAATACAAATAGAGAGCTCTTTAATGATTTGGATGAAATTTATTTTATCCGTGCAATACAAGAATCCCATATTGATAACTGCCAATCTATAGGTGATTTAAGGCACTATGCTGATTTTGTAGTAGAAAACTTTAATCAAGAGGATTGCTCCAATAGAAATTTTGAAGATCCATATGCTGATTTTATTTTAAATCTTAGCACTGTTCTAATCAAGGAAGAATACTATTTGGATGCAATTAAATACCTGATAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAAAAAGTAATCTACTAAAACAAGGATTGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //