Array 1 7239-12430 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAXG02000001.1 Pseudoflavonifractor capillosus ATCC 29799 B_capillosus-2.0.1_Cont12.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 7239 33 100.0 34 ................................. AACCCCGCGCCCACGCAGGAGCAGAGAAACCGGG 7306 33 100.0 37 ................................. TTTCGTTCTGGACCCACACAATGGAGGAGGAAGCCTG 7376 33 100.0 34 ................................. GTGTTCGTGTTATGTGACAGTTAGCCTTGCTAAC 7443 33 100.0 34 ................................. TCCCAGGCCGACCTGCTCCAGGCGCAGAAGAACC 7510 33 100.0 36 ................................. CCGAACAAGAAATACGCCGTTATCTACGCCGACCCG 7579 33 100.0 33 ................................. TCCGCATGGTCCACAACCAGACCGCAGCAGAAC 7645 33 100.0 36 ................................. TTTCCTGACGGCCTGCACTGCACAATCGGGCAACCG 7714 33 100.0 36 ................................. TGGTTGCTCTCTCTGGTACGCTTGCGCTCCCGGGCC 7783 33 100.0 35 ................................. CGTCAAGGTAAACATCGGAAACATCCAGTCCACAG 7851 33 100.0 35 ................................. CTGGACTCAGGAAAAAGCTATCGCTGTTCCGTTGT 7919 33 100.0 35 ................................. CGGGGAACCGGAGGGTGGCGGCTCTACTCCCTGGT 7987 33 100.0 35 ................................. AGGGCGTAAATACGCCCATCGACGAAACCGACGCG 8055 33 100.0 35 ................................. CATCCGGCACCATGGAACTGTACAAGTTCCTCAAC 8123 33 100.0 33 ................................. TCCCTGGTGCGGTAGTAGGCGGTTACAAAGGCC 8189 33 100.0 35 ................................. CGAAAACCCGCTGGTGGACCTGACCCTCAACTCCC 8257 33 100.0 35 ................................. CATCCTCGCCCGCCGGTCCCGGCGGGCCCTGGAGC 8325 33 100.0 36 ................................. CAGGCCGCGCAGGGCTCAGCCTCAACCATCTTTGTA 8394 33 100.0 35 ................................. TGGGTGGCGCAGGCGGTGGTTGCGATGTCGTACCG 8462 33 100.0 34 ................................. TCGTCCGTGTAGGTGGACATGCGCACGTCCTCCA 8529 33 100.0 36 ................................. ATCATCGGTCAGCTGCCTCGCCCGCTCAATCCACTC 8598 33 100.0 34 ................................. CCGGAAAAGACATACGCCGTTATCTATGCCGACC 8665 33 100.0 39 ................................. TTCCTGATTGCCAGGTGTGACGGACAGCCCATTGTGTGG 8737 33 100.0 37 ................................. CCAGCAGCTCCTCCATCTGCTCCATCATCTGCTCTTT 8807 33 100.0 35 ................................. CAGGAACATCTTGATGGGCTCCTGGCACTTGCCAA 8875 33 100.0 33 ................................. AAAGCTGCCGGGGGACATGGGGTTGAGGGCAAA 8941 33 100.0 34 ................................. GTTGCCCAGGTACTGGACAACCGCACCGGCGAAC 9008 33 100.0 35 ................................. AGGTAAAAGCCCTATTCCATAACTTTTTATTGGAG 9076 33 100.0 33 ................................. GTCAAATACCATACGATAATATGAATTATCGGC 9142 33 100.0 36 ................................. GTATAATCTATGAATATAGGCGATTTTCATAACCCA 9211 33 100.0 36 ................................. AGAGGCCAGGAGTATAATTATACCTGTACCCCTAAA 9280 33 100.0 34 ................................. CGCTATTAAATACGAATAAAGAGAGGTATTGCAA 9347 33 100.0 37 ................................. GTAGGCGTTCTATTTACAGTTTACCGTCTAACAGGCG 9417 33 100.0 35 ................................. CGGCAATATGCGGGGAAAATTGCAGAAATCCAAAC 9485 33 100.0 34 ................................. ACAAAAGCGCCCTGTTCCAGTTCGAACCGCATAA 9552 33 100.0 35 ................................. ACGGAGGGAGTGTCACCGGATGTTACGGAACCAAT 9620 33 100.0 33 ................................. ATCACCGCTGGGCCGCCTGAAAGCACCATATGG 9686 33 100.0 36 ................................. CGGGGAGACATTACGTGAAGGAAATGCTCTCCCCAT 9755 33 100.0 35 ................................. CGAAGATTTTTATCGTCCACGCCGCCGGACACATG 9823 33 100.0 34 ................................. ATGTCGGTGGTCAACGTGGTTTTGACTTCTGGCC 9890 33 100.0 36 ................................. CTGCATGATGTCGGCGGCAATGTCCGCCGCTTCATC 9959 33 100.0 33 ................................. AATGCCGCGAAGGACTGAGCAAAAGTTCGCCCG 10025 33 100.0 33 ................................. TTTTTGATGTCGGCCAGAATGCGCCGGGCACGT 10091 33 100.0 35 ................................. TGTAACCAAATTGTAACATTATGCGTCGCCACGAC 10159 33 100.0 39 ................................. TGGGTGCTGTCCGCCATGATGGATGCCGGCGCCCGGTAC 10231 33 100.0 34 ................................. CGGAAGGAACTGTCCAACATCAACCAGCAGATTA 10298 33 100.0 33 ................................. AGCGCCGCAAAACTCTCTGCAAACGTGCGGCCT 10364 33 100.0 35 ................................. AGGACAGCCACCAGGACCAGGATAAAGAGAAGGCC 10432 33 100.0 36 ................................. TTTGTAGCGGTAGACATAACTTTTGACCTCCTAATT 10501 33 100.0 33 ................................. CCTGTACTCCCCGCCTCGTGATTGGAGGCCTCG 10567 33 100.0 34 ................................. CTCTCCCTCTCCGCCGCCATCTCTGCGGCCCTGG 10634 33 100.0 33 ................................. TGTCTGGTCTGCCGAAACCTCTAACAAGCTGGT 10700 33 100.0 36 ................................. CGAGAGGCGCGCGGGATATCTCAGGAGGGGCTTGCA 10769 33 100.0 34 ................................. CATCCGGGGGCTGGACGTGCTGCCGGCGGATGAC 10836 33 100.0 35 ................................. ACGTTGCGGCTTTTGGAGGTGAAACGATGCAGACA 10904 33 100.0 34 ................................. AACTAATGAAAGTATATCATAAGCGCGGCGGAAA 10971 33 100.0 35 ................................. GGCATGATGCACAAAAATGGGGGTGGGTTTTGTAA 11039 33 100.0 35 ................................. GATCACGTTGCCCTGTGCAAGGTCATACAGGGTTT 11107 33 100.0 35 ................................. TATGGGGGTTCGTGCCCTCTCGATCCTGTCTATGC 11175 33 100.0 35 ................................. AAAAACTTGCGGGTATAATCGTAGCTCTCGCCAAA 11243 33 100.0 36 ................................. CCGTCTCCAATGGACTTCTCGCTTATCCCTAAAAAC 11312 33 100.0 35 ................................. AGCAGCAGATCAACGCTCTCAACCTCCAGACTGCC 11380 33 100.0 33 ................................. CCAGGCTGCGATTTCACCCGGTGTGGCGTCTCG 11446 33 100.0 34 ................................. CCGTTTGTCATCCCCCTATCGGCGTCTACATCCT 11513 33 100.0 35 ................................. AGAAGTTTTACGAGCGTGACGCTCGTGGTGGTACT 11581 33 100.0 33 ................................. TCCTATCGGGTTTGCTGTTATCGGTAATGTAAC 11647 33 100.0 34 ................................. CTAACGATAAGTATTTTTCTGTTCCTGCTTCTGG 11714 33 100.0 35 ................................. CGGTGGAACATACGGAGGTGGCGGCGGTGGCGGCG 11782 33 100.0 35 ................................. TCCCGTATGTATTACAGCTCAAACAAGCCGCCTGT 11850 33 100.0 36 ................................. CGCTCCATCATCGGCACCTACTACGACTACGCCATG 11919 33 100.0 35 ................................. AATGCCGGGAAGCCCATCGACCCGGTGACCGTGCG 11987 33 100.0 36 ................................. CTGGCTCTGTGCAGCGGTGGAATCGGCCAGGGTGAG 12056 33 100.0 37 ................................. CGTTAGCCAGACGCACAGGTAGCTGTCCACCGGGCGG 12126 33 100.0 36 ................................. ACCCTGTTTCCCCTCGGGGATACCAAGGTTTAGCAC 12195 33 100.0 32 ................................. TCTACGGCGGCCTGGGTGCCAGGGTCTCCGGT 12260 33 100.0 36 ................................. GAGTCCTATGGCTACGCTGTGACACTCCAGCCCGTG 12329 33 100.0 36 ................................. AGTCTGACGCTCTGGAGCTTCTGAAAATCAGGTGGG 12398 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ======================================= ================== 77 33 100.0 35 GTCGCTCCCCACACGGGGAGCGTGGATTGAAAT # Left flank : CGCTTATCCTCCATTTTTGTGGAAGTGAGTATGTTATGTTAGTACTGATTACATACGATGTTAATACCGGGGATGCTGCCGGACGCAGACGTCTGCGGCAAATTGCCAGACAGTGCGTTAACTATGGTCAGCGTGTACAGTGCTCTGTGTTCGAATGTCTGCTGGACTCAGCCCAGTGCAAAATGCTTCAGGCAAAGCTGTTGGAGATCATGGACCAGGAGAAGGACAGCCTGCGGTTTTACTATCTCGGAAGCCGCTACGAAAACAAGATCGATCACTTCGGCCGCAAAACTTCCTATCTGCCGGAAGACCCTCTGATTCTATAAGTGTGCGAGGCTCCAGCCCCCATAAATTCTCAGGGAGGTTCGCACTTATATCCAGCCGCTTCCCACGAATCATGATACGCTATTTTCTCTTATAGTTTTTCAGCATTTAATATATGCACTTAAAAATTGTGTAAAATGCGCAAATTTGCAGGTATTTATTTGTGTATATCTGCT # Right flank : TAAGAATCACCCCCACCAGACGAAAAAAAGACCAGGTCGCTCCATACAATACAAATGCGTAACGCAAAATTAAACTTAAAATACCGGACCAAAGACTGTCAGCAATAGCGTAAGTTTCTGTGGCATAGCCTTTTGTAGATACGCAGAAGATTTTTTCACCTCACGATCAGGTTTTGACAAGAATCATAATACTGAAAGTGAATTTATCGAATTGAAGGCCAAAGTCATCAACAATATCTGCAAAGAGGTCATCACCTTTATCAACACAGCAGCAAATATATCGTTTTATTTGTAGATGCACCATGCTGCTCCGATCATTCCAAGGAAAAATACTGCTCCCGGCGGTCCTTGCCACCGAAGAGGTTGTTGTACTGTACCTGCCGGTACTGCTCAATCAGGCTGGTATATTCGTTGTTCTCCAGGTGGCTGTACGCATGACCGCTGGTGTCCGTGTACCCCACAAAGGTCATGGCAGGCAGCTGCTCCTGCACGTCCCAGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCACACGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 269950-269713 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAXG02000010.1 Pseudoflavonifractor capillosus ATCC 29799 B_capillosus-2.0.1_Cont138, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 269949 33 100.0 34 ................................. CTTCGCGGCACTGAATCAGGGCGTCCCGGTTGGA 269882 33 100.0 33 ................................. GCCTCCAAAGCGGCAATCTGCTTCTTGTCGATA 269816 33 100.0 36 ................................. ACGGCACCGAACAGCATGACAAGCCCGGTATTTCCG 269747 33 84.8 0 ...G......G..............T...C..T | CC [269717] ========== ====== ====== ====== ================================= ==================================== ================== 4 33 96.2 35 GATACAACCCACTCCCCTCACGGGGACTGAAAC # Left flank : TACAGCTCCGGGGCAGCGGCGGCGAAAAAGTCACTGCTGGTGACGTAGGCGATCTCAGCGGAGCGCAGGGCGTTGCTCTTCAGCTTTTTGCTGGAGAAGATATACTCCTGCTTCCGGGAGACCTCTAAAATTGCCAGATGCTTGGACAATCGCTCCACCTCCCAAATGATGTAAAAATATTCTAAACACTCTGCACAAAAATTTCAACCGCTATTTTCCTTTTTTGACAGGATAACAAAACGCTCACCCTCCATCTCTATCTCCGCACCCAAAGGCCGGAATTCAGAGATGAATCAATTATTTTGTGCGAACCTCTGAAAATGGGGAAGAAATCAGAGGCTGCACGCAGGGGCCCGCACAGGAGCGGACACAAAAATCAGCTCCGGATTTTGTGGAGCATGCACACTTTCTCTTGTAATATGGTAAAAACTGTGTTACGATAAAACACACGGGTTGTACAGCATCGCCAAAAAATTACAACCGGGTTGTACGCTTTTGCC # Right flank : GCTTAAACCCCTCTGATATTCTGGTCAGGCCGGGTATCAGCCTGTCTGTCGAGAGAGGGCTCTCCACTTTCAGCCCTGCCGGCAAACACACGCGCACACTATAATCATGAAGGCCTCGGGGCAATTCCCCGAGGCCTCTCTTGTTTTATCGGCTGTATTCTCTTATCAAAGAATTCTGCACCTGTGCCGGTCCTGCTCTGACACCCACCGCACCAATTACTGCCGGAACCCAGACGCGCCGTTATGCGTCAGTCCAGCTCATGGAATAACAGAGAGCTCTCACACCAGGCAGCCTGAAATCATGGCTGTGCCGGTAGAGAGCTCTTTTCTCTTATAAAAATACTTGCGCTTCTTTCCCAAAAGCCCCCTGCTGCCCGCTCACAGCCTTGCGGAAGTCTGCGCATGCGTCCTGAAACGCATATCCGCCCATTCCCGCACATAAAATGGCCCTATGATACCTGCGCAGGGAAGGGGTGCGCTTCATGAAAATCATCCATCAG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAACCCACTCCCCTCACGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 283677-282818 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAXG02000010.1 Pseudoflavonifractor capillosus ATCC 29799 B_capillosus-2.0.1_Cont138, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================== ================== 283676 33 97.0 34 ................................T TGATGGCGCCCATTGCCATGTCAAGGATGCTGGA 283609 33 100.0 35 ................................. TAATTTACCTCCAATATAAATATAAAAAAGTTATG 283541 33 100.0 34 ................................. TAGCTTTATTAATGCACAGACCCAGCTTGCTGTG 283474 33 100.0 34 ................................. TACTCCGACCTGCTGGGCATGACCGACTCCAGCG 283407 33 100.0 35 ................................. GAATGCGGATTTTTGTAGAGTTGCACAAAAAATTT 283339 33 100.0 33 ................................. AGGTACCCAGCCTCCTCCAGCTCCTTGAGCATC 283273 33 100.0 32 ................................. AGTAAGTCTCCAGGGGCATTCGCACGGTGATG 283208 33 100.0 34 ................................. ATCGGCCTTCTTAGACAGCTTGTCACTCTTTTCG 283141 33 78.8 36 ...GT.GT..A..............T...C... ATATCGTCCTGCGTTTGTTTCATTTGTAGAAAATAG 283072 33 87.9 44 ...G.C......G............A....... CCGGTGTTCGTACTATTACGCACTACGATATCCGGCGATGCAAC 282995 33 84.8 46 ...GA.....ATG.................... ATGAAATAGCCAAGAATAATCTGATCATCTTGCTTCGCTAAGAATT 282916 33 72.7 35 A..G.GG.T.TT.............T...C... TCGGGGTACTCGCAAACTGGGTCCATAACATTTAA 282848 31 84.8 0 ...G........G............T.--.... | ========== ====== ====== ====== ================================= ============================================== ================== 13 33 92.8 36 GATACAACCCGCTCCCCTCACGGGGGCTGAAAC # Left flank : TGCTGAATGGCGCGTACATCCTCCTCGCTCAGGCTTTCCCGGGTGCCGGAGATGCCGCAGCTGAGCAGGAGGGCATCCATCGCCTCAGGGGTCAGGTTCATGGCGGTGCTCAGGTCAAGTTTGGTAAAGTACTTCATAAAATCCTCGCTTTCTTGGCCGGTGGCCGACTGTTTTCTTCCTTCCATATTTACTCCTGCCCGGAGACGGAGCGTTCAGGGATGCGCTGAAATTTTTTCAGGGCTGTCTCCCCGTGTTGCATTCTCTGCCCGGAAGCCAGCCCATTCAGCGCTCACAGCGTATTTTGTGCGAACCTCTGAAAATGGGGAAGGAATCGGTGCCTGCACGCAGGGGGTTCGCACAGGAGCAGGCACAAAAATCAGCTCAGTATTTTGTGGAGTATGCTCTCTTCCCCTTGTAATATGGTAAAAATTGTGTTATGATAAAGCATACGGGTTGTATAGCATCGCCAAAAAATTGAATCCGGGTTGTACGCTTTTGCC # Right flank : GGAAAAATCCCCGGTACCACGGAATATTCCGCAGTACCGGGGATTCTTTTGTTTTGCTCAGAGGGCGTCCTCCGGCCAGGGCTGGACTGCCAGCGCCTGGAGTTCCGCCAGATCCGGCTCCGGCTCGGCTCCGGGAATCGAGTCCGACACAACGGAGACACTCCGGCTCAGCCAGGCGAAGAACTCTCGGAACTGCAGGCCCTGGAGTCTCACCGCCTTCCGGCCGCTGATACGCCTCAGCTGTTCCATGTCAGCGCCCTCGCCTATGCCCACGGCTACCACCGTCAGCCGCCGTGCCTCCACCATCTGGCAGATGCGCTGGGCAGCTTCCCGCAGCACCCTGGGGTCGCCGTTGGGACAGCCGTCGCTCATTACCACCAGGATGGGCTGGTAGTAGTCCACACCGGCGGCCTTATACCGCTCCTTGCGCTGCTCCAGCAGGTCCAGCGCCATGGTCAGCCCCTCTCCCATGTAGGTGAGACCGTTGGCCTCCAGCGGCT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAACCCGCTCCCCTCACGGGGGCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //